Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009256

Physical Location & Seq

Genomic Coordinates Forward (+)

77103508 .. 77106394

Gene Structure 2887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG449100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCAAGCGCCGGCAAAAAAAGTATTGGTGGTGGCAGATCCGACCCGAGATTCATCGGGTGCGCTCCAATACGCTCTTTCTCATTCAGTGCTCGAACACGACGAGTTGATCCTCCTTCATGTCGAGAACCCAAGTAATTGGATACACGGATTCAATATCAATACATTGCTCAAAATCCCGCCTAATCTAGCTACCGTCGCCGCCCAAGCCATGTCGTTTGATCACGGGAAAGGAAATGGAATTGCAAACTCAGGGATTGAGCCGGTAAAGGATTTTCTTGAAGAAATGAAGAATGAATGCAATCGGGCAAAACCAAAACTAAATGTGCGCATAGAGAGGGTGACATTGGAAGCTGGCAGAGACAGAGCAAACACTATTTTACATCATAGCGAAGTTCTTGGGGTTGACATCATTGTTATAGGGCAACGGCGAAGTCTTTTTCCCAAGGGACATTTAGGAGCATATACATGGCCTGCAGGGCGATCGACAGGGTCGTCGAAAGGGATAAACACAGCAGAGTATTTGATTGAGAACTGCAAGTGCACTTGTGTTGGAGTACAGAAGAAGAGCCAAGCTGGAGGCTATGTTCTCAACTCAAAAACCCACAAAAATTTCTGGCTTCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

209

Amino Acids

22.86

Weight (kDa)

9.05

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13450 AT4G13450
fragaria_vesca	FvH4_3g38130 FvH4_4g05010
malus_domestica	MD03G1076500.v1.1 MD11G1081000.v1.1 MD13G1223300.v1.1 MD16G1227600.v1.1
prunus_persica	Prupe.1G050300_v2.0.a1 Prupe.6G061400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395821 RchiOBHm_Chr5g0068561
rosa_multiflora	Rmu_sc0000313.1_g000010 Rmu_sc0003221.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340660
rosa_rugosa	Rorug03G0354000 Rorug05G0390800
rosa_samantha	Rh4DG057200 Rh5AG449100 Rh5BG467200
rosa_wichuraiana	Rw4G005150 Rw5G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	493
Acc16I	TGCGCA	1 cut(s)	329
AciI	CCGC	2 cut(s)	179, 201
AclWI	GGATC	2 cut(s)	32, 103
AcsI	RAATTY	1 cut(s)	610
AfaI	GTAC	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	154, 281
AloI	GAACNNNNNNTCC	2 cut(s)	570, 602
AluBI	AGCT	3 cut(s)	191, 353, 575
AluI	AGCT	3 cut(s)	191, 353, 575
Alw21I	GWGCWC	2 cut(s)	93, 545
Alw26I	GTCTC	1 cut(s)	354
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	32, 103
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	1 cut(s)	470
ApaLI	GTGCAC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	610
AspLEI	GCGC	3 cut(s)	10, 64, 330
AsuHPI	GGTGA	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	545
Bbv12I	GWGCWC	2 cut(s)	93, 545
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	478
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bse118I	RCCGGY	2 cut(s)	10, 262
Bse3DI	GCAATG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	1 cut(s)	472
BsiEI	CGRYCG	1 cut(s)	485
BsiHKAI	GWGCWC	2 cut(s)	93, 545
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	11, 263
BslFI	GGGAC	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	93, 545
Bsp143I	GATC	4 cut(s)	37, 108, 220, 482
BspACI	CCGC	2 cut(s)	179, 201
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	263
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	2 cut(s)	32, 103
BspQI	GCTCTTC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	10, 262
BssAI	RCCGGY	2 cut(s)	10, 262
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	4 cut(s)	37, 108, 220, 482
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	6, 12, 355, 474
BstDEI	CTNAG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 64, 330
BstKTI	GATC	4 cut(s)	40, 111, 223, 485
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	4 cut(s)	37, 108, 220, 482
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 478
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	6, 12, 355, 474
CfoI	GCGC	3 cut(s)	10, 64, 330
Cfr10I	RCCGGY	2 cut(s)	10, 262
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	3 cut(s)	119, 211, 468
CviJI	RGCY	9 cut(s)	191, 209, 262, 353, 472, 570, 575, 582, 619
CviKI_1	RGCY	9 cut(s)	191, 209, 262, 353, 472, 570, 575, 582, 619
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	4 cut(s)	39, 110, 222, 484
DpnII	GATC	4 cut(s)	37, 108, 220, 482
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	122, 214, 471
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	3 cut(s)	118, 210, 467
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspAI	RTGCGCAY	1 cut(s)	329
FspBI	CTAG	1 cut(s)	188
FspI	TGCGCA	1 cut(s)	329
GlaI	GCGC	3 cut(s)	9, 63, 329
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	2 cut(s)	11, 263
HhaI	GCGC	3 cut(s)	10, 64, 330
Hin1II	CATG	3 cut(s)	122, 214, 471
Hin6I	GCGC	3 cut(s)	8, 62, 328
HinP1I	GCGC	3 cut(s)	8, 62, 328
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	50, 150
HpaII	CCGG	2 cut(s)	11, 263
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	406, 543
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	124, 278
Hpy8I	GTNNAC	2 cut(s)	406, 543
Hpy99I	CGWCG	3 cut(s)	104, 200, 499
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	7 cut(s)	4, 245, 300, 476, 537, 543, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 478
HpyF3I	CTNAG	1 cut(s)	250
Hsp92II	CATG	3 cut(s)	122, 214, 471
HspAI	GCGC	3 cut(s)	8, 62, 328
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	37, 108, 220, 482
LguI	GCTCTTC	1 cut(s)	560
LmnI	GCTCC	2 cut(s)	69, 458
LpnPI	CCDG	9 cut(s)	24, 237, 276, 339, 462, 474, 486, 561, 601
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	4 cut(s)	39, 110, 222, 484
MboI	GATC	4 cut(s)	37, 108, 220, 482
MboII	GAAGA	4 cut(s)	293, 301, 574, 577
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	93, 545
MluCI	AATT	3 cut(s)	136, 240, 610
MmeI	TCCRAC	2 cut(s)	65, 532
MnlI	CCTC	3 cut(s)	122, 330, 572
MroNI	GCCGGC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	466
MspI	CCGG	2 cut(s)	11, 263
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 478
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	4 cut(s)	37, 108, 220, 482
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	122, 214, 471
NmuCI	GTSAC	1 cut(s)	340
NsbI	TGCGCA	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 491
PctI	GAATGC	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	50, 150
PflFI	GACNNNGTC	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	202
Ple19I	CGATCG	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	466
SapI	GCTCTTC	1 cut(s)	560
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	37, 108, 220, 482
SbfI	CCTGCAGG	1 cut(s)	478
SdaI	CCTGCAGG	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	93, 545
SetI	ASST	3 cut(s)	193, 355, 577
SfcI	CTRYAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	466
Sse8387I	CCTGCAGG	1 cut(s)	478
Sse9I	AATT	3 cut(s)	136, 240, 610
SsiI	CCGC	2 cut(s)	179, 201
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	4 cut(s)	93, 123, 485, 497
TasI	AATT	3 cut(s)	136, 240, 610
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	50, 150
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	4 cut(s)	42, 107, 302, 309
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	490
VneI	GTGCAC	1 cut(s)	541
XapI	RAATTY	1 cut(s)	610
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.