Rorug03G0354000

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009256
Physical Location & Seq
Forward (+)
43622608 .. 43623096
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0354000.1

Sequence Viewer

Length: 489 bp
ATGGAACCACAAACCCAGCAACCAACCAAGGATGGAGGAAGCAACAAAGCAGCCAAGAGTAGTGCTAACAGGCTTTGCAGGCAGAGTAGTACCAGGTGGACTCCCAGTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTACAAAAAGGAAGTTAGGTCCCCAACTGTAGAGCAGATTCAGAGGATTTGTCTCCAGCTGAAACGGTACGGAAAGATCGAGGGCAAGAACGTGTTTTATTGGTTCGGGAACCATAGGGCTTGGGAGAAGCAGAAGAAGAGGTTCACTTCGGATGTTCATGTGCCCATGCAAAGAGCAGGGCTTGATGGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACATGAACAACAAGTACTCTAACAATTGTCAAGGGGTTTCTTCTGCAGAAGCTCGTGTGGAACAAAAGGGTAAAAGCTTGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

162

Amino Acids

18.85

Weight (kDa)

9.49

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 2.9e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AclWI GGATC 1 cut(s) 369
AfaI GTAC 6 cut(s) 91, 109, 209, 343, 389, 473
AflIII ACRYGT 1 cut(s) 231
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 4 cut(s) 136, 199, 425, 450
AluI AGCT 4 cut(s) 136, 199, 425, 450
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 159
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 341
BauI CACGAG 1 cut(s) 426
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 320
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 168, 417
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 4 cut(s) 6, 161, 251, 343
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 105, 469
Bse21I CCTNAGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 298
BseJI GATNNNNATC 1 cut(s) 122
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 105, 469
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 341
BslFI GGGAC 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 112, 216, 361
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 4 cut(s) 6, 161, 251, 343
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 105, 469
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 3 cut(s) 112, 216, 361
BssSI CACGAG 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 3 cut(s) 169, 207, 486
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 37, 298
BstKTI GATC 3 cut(s) 115, 219, 364
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 112, 216, 361
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 2 cut(s) 168, 417
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 62
Bsu36I CCTNAGG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 37, 298
Cac8I GCNNGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 6 cut(s) 90, 108, 208, 342, 388, 472
CviAII CATG 3 cut(s) 299, 307, 376
CviJI RGCY 8 cut(s) 53, 73, 136, 199, 260, 322, 425, 450
CviKI_1 RGCY 8 cut(s) 53, 73, 136, 199, 260, 322, 425, 450
CviQI GTAC 6 cut(s) 90, 108, 208, 342, 388, 472
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 114, 218, 363
DpnII GATC 3 cut(s) 112, 216, 361
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 3 cut(s) 302, 310, 379
FaiI YATR 5 cut(s) 255, 300, 308, 369, 377
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 298, 306, 375
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 44, 305
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 179
Hin1II CATG 3 cut(s) 302, 310, 379
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 4 cut(s) 100, 123, 178, 458
Hpy166II GTNNAC 2 cut(s) 99, 285
Hpy188I TCNGA 4 cut(s) 117, 183, 292, 463
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 99, 285
HpyCH4III ACNGT 3 cut(s) 169, 207, 486
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 78, 310, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 3 cut(s) 302, 310, 379
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 112, 216, 361
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 62
MabI ACCWGGT 1 cut(s) 92
MaeII ACGT 1 cut(s) 231
MalI GATC 3 cut(s) 114, 218, 363
MboI GATC 3 cut(s) 112, 216, 361
MboII GAAGA 3 cut(s) 286, 289, 405
MfeI CAATTG 2 cut(s) 346, 397
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 2 cut(s) 346, 397
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 6 cut(s) 29, 137, 177, 214, 273, 352
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 2 cut(s) 346, 397
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 3 cut(s) 112, 216, 361
NlaIII CATG 3 cut(s) 302, 310, 379
NlaIV GGNNCC 4 cut(s) 6, 161, 251, 343
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 123, 178, 458
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 4 cut(s) 6, 161, 251, 343
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsrI GAACNNNNNNTAC 2 cut(s) 371, 403
PstI CTGCAG 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 6 cut(s) 91, 109, 209, 343, 389, 473
RsaNI GTAC 6 cut(s) 90, 108, 208, 342, 388, 472
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 112, 216, 361
Sau96I GGNCC 1 cut(s) 159
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 306
SetI ASST 9 cut(s) 98, 138, 161, 201, 234, 284, 358, 427, 452
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 2 cut(s) 168, 417
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 346, 397
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 169, 207, 486
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 346, 397
TatI WGTACW 2 cut(s) 107, 387
TfiI GAWTC 3 cut(s) 123, 178, 458
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 287, 392
TspGWI ACGGA 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.