Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015468

Physical Location & Seq

Genomic Coordinates Forward (+)

8517100 .. 8517954

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCACTAACCGCACAATTCTCGCCGCCGGTCACCGGAATAACCAGGAGTCTCCGGGATACAAAACCGTCACTGTCTAATCTCCGTGTATTTCCGGTTTACACTGAGATAAGAACTATGACGACGAGTAATCTGAGGAAATCGGCGTGTTTTGTGGCTAAGGCTATAGAACAGAGACGAGATACAGCTGGATCTGAATCGGAATCAGAAGCGACTCCGTCACCGGCGGAAGAGAGTGGAAGCGGAGAAGATAAGGAAGTGGAGATTAGCGCGATAGGAGCAGAGATAAAAGCAGCGATGGAGCAGAGGAAAACGGCGGAGGAAGAGAAAGGGAAGAACGAGTTTCTTAGTGGAGTTGCGGAGGAAGTGAAGGAGATTGAGTGGCCGGCGTTTCAGAAAGTTCTCGGAACTACCGGCGTCGTGCTCGGTGTTATCGCTGGCTCTAGCGTCGTCTTGCTCACTGTCAATTTCCTTTTGGCTGAACTCTCTGATCGAGTGTTCATCGGAAGAGGTGTTCAAGACTTCTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

177

Amino Acids

19.12

Weight (kDa)

4.91

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecE	PF00584	114 - 162	4.2e-06	SecE/Sec61-gamma subunits of protein translocation complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14870
fragaria_vesca	FvH4_5g07900
malus_domestica	MD13G1193800.v1.1 MD16G1194500.v1.1
prunus_persica	Prupe.1G014400_v2.0.a1
pyrus_communis	pycom13g16610
rosa_chinensis	RchiOBHm_Chr7g0190521
rosa_laevigata	RLG00000004521
rosa_multiflora	Rmu_co8215220.1_g000001 Rmu_sc0000526.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264540
rosa_rugosa	Rorug06G0505000
rosa_samantha	Rh7AG111100 Rh7BG114000 Rh7DG114900
rosa_wichuraiana	Rw7G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AciI	CCGC	6 cut(s)	12, 26, 227, 243, 317, 359
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	511
AcyI	GRCGYC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	44
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
AluBI	AGCT	2 cut(s)	188, 531
AluI	AGCT	2 cut(s)	188, 531
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	56, 169
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	25, 213
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	330
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	56, 169
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	26, 294
BlsI	GCNGC	2 cut(s)	27, 295
Bme1390I	CCNGG	2 cut(s)	46, 56
BmrFI	CCNGG	2 cut(s)	46, 56
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	417
BsaWI	WCCGGW	2 cut(s)	35, 94
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	4 cut(s)	28, 223, 385, 413
Bse8I	GATNNNNATC	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	96, 125
BseXI	GCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	7 cut(s)	29, 36, 55, 95, 224, 386, 414
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	56, 169
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	191, 490
BspACI	CCGC	6 cut(s)	12, 26, 227, 243, 317, 359
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	2 cut(s)	97, 126
BspFNI	CGCG	1 cut(s)	272
BspPI	GGATC	1 cut(s)	199
BsrFI	RCCGGY	4 cut(s)	28, 223, 385, 413
BssAI	RCCGGY	4 cut(s)	28, 223, 385, 413
BssMI	GATC	2 cut(s)	191, 490
BssNI	GRCGYC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	69, 75, 463
Bst6I	CTCTTC	3 cut(s)	225, 318, 502
BstACI	GRCGYC	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	387, 439
BstDEI	CTNAG	4 cut(s)	105, 134, 159, 347
BstEII	GGTNACC	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	194, 493
BstMAI	GTCTC	2 cut(s)	56, 169
BstMBI	GATC	2 cut(s)	191, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	46
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	44, 54
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	385
BtgZI	GCGATG	1 cut(s)	311
BtsIMutI	CAGTG	3 cut(s)	71, 102, 459
Cac8I	GCNNGC	2 cut(s)	387, 439
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	4 cut(s)	28, 223, 385, 413
CseI	GACGC	2 cut(s)	406, 436
CviJI	RGCY	7 cut(s)	158, 164, 188, 385, 441, 479, 531
CviKI_1	RGCY	7 cut(s)	158, 164, 188, 385, 441, 479, 531
DdeI	CTNAG	4 cut(s)	105, 134, 159, 347
DpnI	GATC	2 cut(s)	193, 492
DpnII	GATC	2 cut(s)	191, 490
EaeI	YGGCCR	1 cut(s)	383
Eam1104I	CTCTTC	3 cut(s)	225, 318, 502
EarI	CTCTTC	3 cut(s)	225, 318, 502
EciI	GGCGGA	2 cut(s)	242, 332
Eco57I	CTGAAG	1 cut(s)	511
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	44
Esp3I	CGTCTC	1 cut(s)	169
FaiI	YATR	2 cut(s)	119, 167
Fnu4HI	GCNGC	2 cut(s)	26, 294
Fsp4HI	GCNGC	2 cut(s)	26, 294
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	2 cut(s)	26, 294
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	7 cut(s)	29, 36, 55, 95, 224, 386, 414
HgaI	GACGC	2 cut(s)	406, 436
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	417
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	4 cut(s)	49, 197, 203, 214
HpaII	CCGG	7 cut(s)	29, 36, 55, 95, 224, 386, 414
HphI	GGTGA	2 cut(s)	25, 213
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	8 cut(s)	135, 196, 202, 208, 396, 407, 490, 506
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	3 cut(s)	127, 422, 452
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	3 cut(s)	69, 75, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	4 cut(s)	105, 134, 159, 347
Hsp92I	GRCGYC	1 cut(s)	417
HspAI	GCGC	1 cut(s)	270
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	191, 490
LmnI	GCTCC	2 cut(s)	278, 301
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	3, 31, 69, 219
MalI	GATC	2 cut(s)	193, 492
MboI	GATC	2 cut(s)	191, 490
MboII	GAAGA	6 cut(s)	242, 260, 335, 346, 517, 519
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	2 cut(s)	17, 466
MlyI	GAGTC	2 cut(s)	58, 208
MnlI	CCTC	5 cut(s)	129, 300, 313, 355, 503
MroNI	GCCGGC	1 cut(s)	385
MspA1I	CMGCKG	2 cut(s)	188, 531
MspI	CCGG	7 cut(s)	29, 36, 55, 95, 224, 386, 414
MspR9I	CCNGG	2 cut(s)	46, 56
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	278
NaeI	GCCGGC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	191, 490
NgoMIV	GCCGGC	1 cut(s)	385
NmuCI	GTSAC	4 cut(s)	3, 31, 69, 219
PdiI	GCCGGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	197, 203
PflFI	GACNNNGTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	27, 295
PleI	GAGTC	2 cut(s)	57, 208
PpsI	GAGTC	2 cut(s)	57, 208
Psp6I	CCWGG	1 cut(s)	44
PspEI	GGTNACC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	217
PvuII	CAGCTG	2 cut(s)	188, 531
SatI	GCNGC	2 cut(s)	26, 294
Sau3AI	GATC	2 cut(s)	191, 490
SchI	GAGTC	2 cut(s)	58, 208
ScrFI	CCNGG	2 cut(s)	46, 56
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	3 cut(s)	190, 514, 533
SfcI	CTRYAG	1 cut(s)	165
SgrAI	CRCCGGYG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	17, 466
SsiI	CCGC	6 cut(s)	12, 26, 227, 243, 317, 359
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	44, 54
TaaI	ACNGT	3 cut(s)	69, 75, 463
TaqI	TCGA	1 cut(s)	493
TasI	AATT	2 cut(s)	17, 466
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	197, 203
TscAI	CASTG	3 cut(s)	78, 109, 466
TseFI	GTSAC	4 cut(s)	3, 31, 69, 219
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	4 cut(s)	3, 31, 69, 219
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	2 cut(s)	74, 207
TspRI	CASTG	3 cut(s)	78, 109, 466
Tth111I	GACNNNGTC	1 cut(s)	217
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.