pycom13g16610

Preprotein translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015468
Physical Location & Seq
Reverse (-)
12391121 .. 12391805
685 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16610.2

Sequence Viewer

Length: 624 bp
ATGGCTGTACGCATGTTCGTACAGTTCCCGGTATCCTCACCCTTCCCGCCACCCACAAAATCCGGTAGCCTAAACTCACCCGTACGGTTGAAACTGCCATGTGCCGGTAGCCACTCAATCCCCCTATCCCAACCCAGACGGCCCCTAACACAGAAGAACAGAAGACAATCATTTCTCAGAGCCGTCGACGAAAGCCAGACGAATTCCGAGTCGGGTGCGGAATCGGTGAGCACCGAAGACAAAGAATCGGCCGCGAGTCAACCGGTCGAGTTGAGCGAGTTGGGGATGGAGATCAAGGCAGCGATGCAGAAGAGGAAGGAGGAGAAAGAGGGGGACTTTTTGAGCGGAGTGGCGGAGGAAGTTAGGGAGATCGAGTGGCCGGCGTTCGCTAAGGTGTTGGGAACCACCGGGGTGGTTTTTCCGATCAGCTTTTTGCCGGGAGAGGGGTTCAGGATTTTTTCAGCTGAGACTGAGAGTGAGAGAGAAGTGATAATGTTGGGCTTCTGGGCCCACTATCATACCCGCCCCGGCCCATATGTGTCGTGTTGTCTTCCTGGAAGAGAGACGGACTGTACATCATGTAATGGAGAGTGGAGACTCATTTCTTTGTGTTTCACAAAATGA

Protein Analysis

208

Amino Acids

22.93

Weight (kDa)

6.01

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015468)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14870
fragaria_vesca FvH4_5g07900
malus_domestica MD13G1193800.v1.1 MD16G1194500.v1.1
prunus_persica Prupe.1G014400_v2.0.a1
pyrus_communis pycom13g16610
rosa_chinensis RchiOBHm_Chr7g0190521
rosa_laevigata RLG00000004521
rosa_multiflora Rmu_co8215220.1_g000001 Rmu_sc0000526.1_g000006
rosa_roxburghii Rroxscaffold_3G00264540
rosa_rugosa Rorug06G0505000
rosa_samantha Rh7AG111100 Rh7BG114000 Rh7DG114900
rosa_wichuraiana Rw7G009700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 345
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 254
AciI CCGC 6 cut(s) 47, 218, 252, 345, 353, 523
AcoI YGGCCR 2 cut(s) 249, 377
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 4 cut(s) 9, 21, 84, 574
AfiI CCNNNNNNNGG 2 cut(s) 104, 443
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 553
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 2 cut(s) 429, 464
AluI AGCT 2 cut(s) 429, 464
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 3 cut(s) 461, 557, 589
AoxI GGCC 5 cut(s) 140, 249, 377, 507, 529
ApaI GGGCCC 1 cut(s) 511
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsiGI ACCGGT 1 cut(s) 262
AspS9I GGNCC 4 cut(s) 141, 507, 508, 530
AsuC2I CCSGG 4 cut(s) 29, 409, 438, 528
AsuHPI GGTGA 3 cut(s) 30, 69, 238
BaeGI GKGCMC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 511
BbsI GAAGAC 3 cut(s) 169, 243, 542
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 155, 167
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 555
BciVI GTATCC 1 cut(s) 43
BcnI CCSGG 4 cut(s) 29, 409, 438, 528
BcoDI GTCTC 3 cut(s) 461, 557, 589
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 2 cut(s) 252, 300
BlsI GCNGC 2 cut(s) 253, 301
Bme1390I CCNGG 5 cut(s) 29, 409, 438, 528, 555
BmgT120I GGNCC 4 cut(s) 141, 507, 508, 530
BmiI GGNNCC 3 cut(s) 143, 403, 509
BmrFI CCNGG 5 cut(s) 29, 409, 438, 528, 555
BmsI GCATC 1 cut(s) 294
BpiI GAAGAC 3 cut(s) 169, 243, 542
Bpu10I CCTNAGC 1 cut(s) 390
BpuMI CCSGG 4 cut(s) 29, 409, 438, 528
BsaBI GATNNNNATC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 408, 526
BsaWI WCCGGW 2 cut(s) 62, 262
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 443
Bse118I RCCGGY 3 cut(s) 104, 262, 379
Bse8I GATNNNNATC 1 cut(s) 290
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 408, 526
BseGI GGATG 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 2 cut(s) 104, 443
BseMII CTCAG 3 cut(s) 190, 456, 462
BseRI GAGGAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 511
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 2 cut(s) 252, 267
BshFI GGCC 5 cut(s) 142, 251, 379, 509, 531
BshTI ACCGGT 1 cut(s) 262
BsiEI CGRYCG 2 cut(s) 252, 267
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 8 cut(s) 29, 63, 105, 263, 380, 408, 437, 528
BsiWI CGTACG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 104, 443
BsmAI GTCTC 3 cut(s) 461, 557, 589
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 5 cut(s) 142, 251, 379, 509, 531
Bsp120I GGGCCC 1 cut(s) 507
Bsp1286I GDGCHC 2 cut(s) 233, 511
Bsp1407I TGTACA 1 cut(s) 572
Bsp143I GATC 3 cut(s) 291, 369, 423
BspACI CCGC 6 cut(s) 47, 218, 252, 345, 353, 523
BspANI GGCC 5 cut(s) 142, 251, 379, 509, 531
BspCNI CTCAG 3 cut(s) 189, 457, 463
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 3 cut(s) 143, 403, 509
BsrBI CCGCTC 1 cut(s) 345
BsrFI RCCGGY 3 cut(s) 104, 262, 379
BsrGI TGTACA 1 cut(s) 572
BssAI RCCGGY 3 cut(s) 104, 262, 379
BssECI CCNNGG 2 cut(s) 408, 526
BssMI GATC 3 cut(s) 291, 369, 423
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 3 cut(s) 24, 87, 572
Bst6I CTCTTC 2 cut(s) 305, 553
BstAUI TGTACA 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 4 cut(s) 176, 390, 465, 471
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 3 cut(s) 294, 372, 426
BstMAI GTCTC 3 cut(s) 461, 557, 589
BstMBI GATC 3 cut(s) 291, 369, 423
BstMCI CGRYCG 2 cut(s) 252, 267
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 5 cut(s) 27, 407, 436, 526, 553
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 3 cut(s) 169, 243, 542
BstXI CCANNNNNNTGG 1 cut(s) 412
BstZI CGGCCG 1 cut(s) 249
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 5 cut(s) 142, 251, 379, 509, 531
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 381
Cfr10I RCCGGY 3 cut(s) 104, 262, 379
Cfr13I GGNCC 4 cut(s) 141, 507, 508, 530
Csp6I GTAC 4 cut(s) 8, 20, 83, 573
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 3 cut(s) 13, 99, 579
CviQI GTAC 4 cut(s) 8, 20, 83, 573
DdeI CTNAG 4 cut(s) 176, 390, 465, 471
DpnI GATC 3 cut(s) 293, 371, 425
DpnII GATC 3 cut(s) 291, 369, 423
EaeI YGGCCR 2 cut(s) 249, 377
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 305, 553
EarI CTCTTC 2 cut(s) 305, 553
EciI GGCGGA 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 511
Eco52I CGGCCG 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 511
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 3 cut(s) 16, 102, 582
FaiI YATR 6 cut(s) 14, 100, 519, 535, 537, 580
FaqI GGGAC 1 cut(s) 347
FatI CATG 3 cut(s) 12, 98, 578
FauI CCCGC 2 cut(s) 54, 530
FauNDI CATATG 1 cut(s) 535
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 252, 300
FokI GGATG 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 2 cut(s) 252, 300
GluI GCNGC 2 cut(s) 252, 300
HaeIII GGCC 5 cut(s) 142, 251, 379, 509, 531
HapII CCGG 8 cut(s) 29, 63, 105, 263, 380, 408, 437, 528
Hin1II CATG 3 cut(s) 16, 102, 582
HincII GTYRAC 2 cut(s) 187, 260
HindII GTYRAC 2 cut(s) 187, 260
HinfI GANTC 5 cut(s) 209, 221, 245, 256, 597
HpaII CCGG 8 cut(s) 29, 63, 105, 263, 380, 408, 437, 528
HphI GGTGA 3 cut(s) 30, 69, 238
Hpy166II GTNNAC 2 cut(s) 187, 260
Hpy188I TCNGA 3 cut(s) 179, 208, 423
Hpy188III TCNNGA 1 cut(s) 451
Hpy8I GTNNAC 2 cut(s) 187, 260
Hpy99I CGWCG 2 cut(s) 188, 191
HpyAV CCTTC 2 cut(s) 52, 310
HpyCH4III ACNGT 3 cut(s) 24, 87, 572
HpyCH4V TGCA 1 cut(s) 307
HpyF3I CTNAG 4 cut(s) 176, 390, 465, 471
Hsp92II CATG 3 cut(s) 16, 102, 582
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
Kzo9I GATC 3 cut(s) 291, 369, 423
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 1 cut(s) 294
MalI GATC 3 cut(s) 293, 371, 425
MbiI CCGCTC 1 cut(s) 345
MboI GATC 3 cut(s) 291, 369, 423
MboII GAAGA 6 cut(s) 166, 174, 248, 322, 542, 570
MhlI GDGCHC 2 cut(s) 233, 511
MluCI AATT 1 cut(s) 202
MlyI GAGTC 3 cut(s) 218, 265, 591
MnlI CCTC 6 cut(s) 46, 306, 313, 322, 349, 436
MroNI GCCGGC 1 cut(s) 379
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 8 cut(s) 29, 63, 105, 263, 380, 408, 437, 528
MspR9I CCNGG 5 cut(s) 29, 409, 438, 528, 555
MvaI CCWGG 1 cut(s) 555
MvnI CGCG 1 cut(s) 254
NaeI GCCGGC 1 cut(s) 381
NciI CCSGG 4 cut(s) 29, 409, 438, 528
NdeI CATATG 1 cut(s) 535
NdeII GATC 3 cut(s) 291, 369, 423
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 3 cut(s) 16, 102, 582
NlaIV GGNNCC 3 cut(s) 143, 403, 509
NspI RCATGY 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdiI GCCGGC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 221, 245
Pfl23II CGTACG 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 553
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 2 cut(s) 253, 301
PleI GAGTC 3 cut(s) 217, 264, 591
PpsI GAGTC 3 cut(s) 217, 264, 591
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspLI CGTACG 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 143, 403, 509
PspOMI GGGCCC 1 cut(s) 507
PspPI GGNCC 4 cut(s) 141, 507, 508, 530
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 9, 21, 84, 574
RsaNI GTAC 4 cut(s) 8, 20, 83, 573
RseI CAYNNNNRTG 1 cut(s) 410
SalI GTCGAC 1 cut(s) 185
SatI GCNGC 2 cut(s) 252, 300
Sau3AI GATC 3 cut(s) 291, 369, 423
Sau96I GGNCC 4 cut(s) 141, 507, 508, 530
SchI GAGTC 3 cut(s) 218, 265, 591
ScrFI CCNGG 5 cut(s) 29, 409, 438, 528, 555
SduI GDGCHC 2 cut(s) 233, 511
SetI ASST 3 cut(s) 396, 431, 466
SfaNI GCATC 1 cut(s) 294
SgrDI CGTCGACG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 1 cut(s) 202
SsiI CCGC 6 cut(s) 47, 218, 252, 345, 353, 523
StyD4I CCNGG 5 cut(s) 27, 407, 436, 526, 553
TaaI ACNGT 3 cut(s) 24, 87, 572
TaqI TCGA 3 cut(s) 186, 267, 372
TasI AATT 1 cut(s) 202
TatI WGTACW 1 cut(s) 572
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 221, 245
TseI GCWGC 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 581
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.