Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015468

Physical Location & Seq

Genomic Coordinates Reverse (-)

16774913 .. 16782601

Gene Structure 7689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1193800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTCTACGCATGTTCGTACAGTTCCCGGTTAGCTCACCCTTCCCGCCACCCACAATATCCGGTAGCCTAAACTCACCTGTACGGTTGAAACCGCCATGTGCCGGTGGCCACTCAATCCCCCTATCCCAACCCAGACGGCCCCTAACACAGAAGAACAGAAGACAATCATTTCTCAGAGCTGTCGACGAAAGCCAGACGAATTCAGAGTCGGGCGCGGAATCGGTGAGAACCCAAGACAAAGAATCGGCCGCGAGTCAACCCGTCAAGTTGAGCGAGTTGGGGAAGGAGATCAAGGCAGCGATGCAGAAGAGGAAGGAGGAGAAAGAGGGGGATTTTTTTAGCGGAGTGGCGGAGGAAGTTAGGGAGATCGAGTGGCCGGCGTTCGCTAAGGTGTTGGGAACCACCGGGGTGGTGCTCGGCGTCATTTCCGGCTCCAGCGTCGTTTTGCTCACTGTCAATGCTGTTTTGGCCGAGTTTTCCGATCAGGTTTTTGCCGGGAGAGGGGTTCAGGATTTTTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

176

Amino Acids

18.93

Weight (kDa)

8.82

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14870
fragaria_vesca	FvH4_5g07900
malus_domestica	MD13G1193800.v1.1 MD16G1194500.v1.1
prunus_persica	Prupe.1G014400_v2.0.a1
pyrus_communis	pycom13g16610
rosa_chinensis	RchiOBHm_Chr7g0190521
rosa_laevigata	RLG00000004521
rosa_multiflora	Rmu_co8215220.1_g000001 Rmu_sc0000526.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264540
rosa_rugosa	Rorug06G0505000
rosa_samantha	Rh7AG111100 Rh7BG114000 Rh7DG114900
rosa_wichuraiana	Rw7G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	2 cut(s)	218, 254
AciI	CCGC	6 cut(s)	47, 95, 218, 252, 345, 353
AcoI	YGGCCR	4 cut(s)	109, 249, 377, 471
AcsI	RAATTY	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	21, 84
AfiI	CCNNNNNNNGG	2 cut(s)	104, 504
AgsI	TTSAA	1 cut(s)	91
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	3 cut(s)	36, 182, 525
AluI	AGCT	3 cut(s)	36, 182, 525
Alw21I	GWGCWC	1 cut(s)	420
AoxI	GGCC	5 cut(s)	109, 140, 249, 377, 471
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	3 cut(s)	29, 409, 499
AsuHPI	GGTGA	3 cut(s)	30, 69, 238
BalI	TGGCCA	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	155
BcnI	CCSGG	3 cut(s)	29, 409, 499
BisI	GCNGC	2 cut(s)	252, 300
BlsI	GCNGC	2 cut(s)	253, 301
Bme1390I	CCNGG	3 cut(s)	29, 409, 499
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	3 cut(s)	143, 403, 436
BmrFI	CCNGG	3 cut(s)	29, 409, 499
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	390
BpuMI	CCSGG	3 cut(s)	29, 409, 499
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 504
Bse118I	RCCGGY	2 cut(s)	104, 379
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	104, 504
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	218, 254
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	5 cut(s)	111, 142, 251, 379, 473
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	7 cut(s)	29, 63, 105, 380, 408, 432, 498
BslI	CCNNNNNNNGG	2 cut(s)	104, 504
BsnI	GGCC	5 cut(s)	111, 142, 251, 379, 473
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	291, 369, 484
BspACI	CCGC	6 cut(s)	47, 95, 218, 252, 345, 353
BspANI	GGCC	5 cut(s)	111, 142, 251, 379, 473
BspCNI	CTCAG	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	218, 254
BspLI	GGNNCC	3 cut(s)	143, 403, 436
BsrFI	RCCGGY	2 cut(s)	104, 379
BssAI	RCCGGY	2 cut(s)	104, 379
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	3 cut(s)	291, 369, 484
BssNI	GRCGYC	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	24, 87, 457
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	176, 390
BstFNI	CGCG	2 cut(s)	218, 254
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	3 cut(s)	294, 372, 487
BstMBI	GATC	3 cut(s)	291, 369, 484
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	27, 407, 497
BstUI	CGCG	2 cut(s)	218, 254
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	5 cut(s)	111, 142, 251, 379, 473
BtgZI	GCGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	2 cut(s)	104, 379
Cfr13I	GGNCC	1 cut(s)	141
CseI	GACGC	2 cut(s)	412, 430
Csp6I	GTAC	2 cut(s)	20, 83
CviAII	CATG	2 cut(s)	13, 99
CviQI	GTAC	2 cut(s)	20, 83
DdeI	CTNAG	2 cut(s)	176, 390
DpnI	GATC	3 cut(s)	293, 371, 486
DpnII	GATC	3 cut(s)	291, 369, 484
EaeI	YGGCCR	4 cut(s)	109, 249, 377, 471
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	368
EclXI	CGGCCG	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	202
FaeI	CATG	2 cut(s)	16, 102
FaiI	YATR	2 cut(s)	14, 100
FatI	CATG	2 cut(s)	12, 98
FauI	CCCGC	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	252, 300
Fsp4HI	GCNGC	2 cut(s)	252, 300
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	2 cut(s)	252, 300
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	5 cut(s)	111, 142, 251, 379, 473
HapII	CCGG	7 cut(s)	29, 63, 105, 380, 408, 432, 498
HgaI	GACGC	2 cut(s)	412, 430
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	16, 102
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	2 cut(s)	187, 260
HindII	GTYRAC	2 cut(s)	187, 260
HinfI	GANTC	4 cut(s)	209, 221, 245, 256
HpaII	CCGG	7 cut(s)	29, 63, 105, 380, 408, 432, 498
HphI	GGTGA	3 cut(s)	30, 69, 238
Hpy166II	GTNNAC	2 cut(s)	187, 260
Hpy188I	TCNGA	3 cut(s)	179, 208, 484
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	187, 260
Hpy99I	CGWCG	2 cut(s)	191, 446
HpyAV	CCTTC	3 cut(s)	52, 280, 310
HpyCH4III	ACNGT	3 cut(s)	24, 87, 457
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	2 cut(s)	176, 390
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	16, 102
HspAI	GCGC	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	291, 369, 484
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	294
MalI	GATC	3 cut(s)	293, 371, 486
MboI	GATC	3 cut(s)	291, 369, 484
MboII	GAAGA	3 cut(s)	166, 174, 322
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	202
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	218, 265
MnlI	CCTC	5 cut(s)	306, 313, 322, 349, 497
Mox20I	TGGCCA	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	410
Msp20I	TGGCCA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	7 cut(s)	29, 63, 105, 380, 408, 432, 498
MspR9I	CCNGG	3 cut(s)	29, 409, 499
MvnI	CGCG	2 cut(s)	218, 254
MwoI	GCNNNNNNNGC	1 cut(s)	470
NaeI	GCCGGC	1 cut(s)	381
NciI	CCSGG	3 cut(s)	29, 409, 499
NdeII	GATC	3 cut(s)	291, 369, 484
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	16, 102
NlaIV	GGNNCC	3 cut(s)	143, 403, 436
NmeAIII	GCCGAG	2 cut(s)	399, 499
NspI	RCATGY	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	410
PdiI	GCCGGC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	221, 245
PkrI	GCNGC	2 cut(s)	253, 301
PleI	GAGTC	2 cut(s)	217, 264
PpsI	GAGTC	2 cut(s)	217, 264
PspN4I	GGNNCC	3 cut(s)	143, 403, 436
PspPI	GGNCC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	525
RsaI	GTAC	2 cut(s)	21, 84
RsaNI	GTAC	2 cut(s)	20, 83
RseI	CAYNNNNRTG	1 cut(s)	410
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	2 cut(s)	252, 300
Sau3AI	GATC	3 cut(s)	291, 369, 484
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	2 cut(s)	218, 265
ScrFI	CCNGG	3 cut(s)	29, 409, 499
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	6 cut(s)	38, 82, 184, 396, 492, 527
SfaNI	GCATC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	6 cut(s)	47, 95, 218, 252, 345, 353
StyD4I	CCNGG	3 cut(s)	27, 407, 497
TaaI	ACNGT	3 cut(s)	24, 87, 457
TaqI	TCGA	2 cut(s)	186, 372
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	221, 245
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	1 cut(s)	299
TspRI	CASTG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.