Rh7BG114000

Preprotein translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015468
Physical Location & Seq
Forward (+)
8564389 .. 8564913
525 bp
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UTR
Exon/CDS
Intron
Rh7BG114000.1

Sequence Viewer

Length: 525 bp
ATGGCGCTTCGGTTTCTCGCCCAAGTCCCGGTAATCTCACCCTTCCCGTCCACTTCAAAATCCGGCAACCTTACCTCCTCCTCTTCCGTCAGACTGCAACCGCCACGTGTCAGTCACCTGACGGAGAAGAGCAAGAGCAAGAGCAAGAGAAAGCCACCGCTCTTCAGTTCAATCAAAGCCGTCGACGAAAGCCAAGCGGATTCCGACACCGAGCCAAAAGGAGAGTCGTCGGCGTCGGCGAGTGAACCCGGCGAGTTGAGCGAGTTGGGGGCGGAGATCAAGAAGGCGATGTCGGAGAGGAAGGAGAAGGAGAAAGAAGGAGGAGGCGGCGATTTGTTGGGTGGAGTGGCGGAGGAGATTAGGGAGATCGAGTGGCCTGTGTTCGGCAAGGTCTTGGGGACTACTGGAGTTGTGCTTGGGGTTATTGCCGGCTCCAGCGTCGTTTTGCTCACTGTCAATGCCGTTTTGGCCGAGCTGTCCGACCAGGTTTTCGCCGGCAGAGGCGTTCAGGATTTTTTCGGCTGA

Protein Analysis

174

Amino Acids

18.26

Weight (kDa)

5.59

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015468)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14870
fragaria_vesca FvH4_5g07900
malus_domestica MD13G1193800.v1.1 MD16G1194500.v1.1
prunus_persica Prupe.1G014400_v2.0.a1
pyrus_communis pycom13g16610
rosa_chinensis RchiOBHm_Chr7g0190521
rosa_laevigata RLG00000004521
rosa_multiflora Rmu_co8215220.1_g000001 Rmu_sc0000526.1_g000006
rosa_roxburghii Rroxscaffold_3G00264540
rosa_rugosa Rorug06G0505000
rosa_samantha Rh7AG111100 Rh7BG114000 Rh7DG114900
rosa_wichuraiana Rw7G009700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 183
AciI CCGC 6 cut(s) 101, 158, 197, 272, 327, 350
AcoI YGGCCR 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 148
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 28, 383
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 57, 171
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
AoxI GGCC 2 cut(s) 374, 468
ArsI GACNNNNNNTTYG 4 cut(s) 209, 241, 473, 505
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 29, 249
AsuHPI GGTGA 2 cut(s) 30, 107
BbrPI CACGTG 1 cut(s) 107
BceAI ACGGC 2 cut(s) 164, 446
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 2 cut(s) 29, 249
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 3 cut(s) 29, 249, 485
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 3 cut(s) 29, 249, 485
BpmI CTGGAG 2 cut(s) 418, 426
BpuMI CCSGG 2 cut(s) 29, 249
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 233
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 356, 386
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 383
Bse118I RCCGGY 2 cut(s) 428, 494
Bse1I ACTGG 1 cut(s) 409
BseBI CCWGG 1 cut(s) 485
BseLI CCNNNNNNNGG 2 cut(s) 28, 383
BseNI ACTGG 1 cut(s) 409
BseRI GAGGAG 4 cut(s) 67, 70, 336, 368
BshFI GGCC 2 cut(s) 376, 470
BsiSI CCGG 5 cut(s) 29, 63, 249, 429, 495
BslFI GGGAC 2 cut(s) 11, 412
BslI CCNNNNNNNGG 2 cut(s) 28, 383
BsmFI GGGAC 2 cut(s) 11, 412
BsnI GGCC 2 cut(s) 376, 470
Bsp143I GATC 2 cut(s) 276, 366
BspACI CCGC 6 cut(s) 101, 158, 197, 272, 327, 350
BspANI GGCC 2 cut(s) 376, 470
BspLI GGNNCC 1 cut(s) 433
BspQI GCTCTTC 2 cut(s) 122, 167
BsrBI CCGCTC 1 cut(s) 160
BsrFI RCCGGY 2 cut(s) 428, 494
BsrI ACTGG 1 cut(s) 409
BssAI RCCGGY 2 cut(s) 428, 494
BssMI GATC 2 cut(s) 276, 366
BssNI GRCGYC 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 3 cut(s) 88, 122, 167
BstACI GRCGYC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 430, 496
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 279, 369
BstMBI GATC 2 cut(s) 276, 366
BstMWI GCNNNNNNNGC 2 cut(s) 258, 467
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 27, 247, 483
BsuRI GGCC 2 cut(s) 376, 470
BtgZI GCGATG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 430, 496
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 428, 494
CseI GACGC 2 cut(s) 222, 427
CsiI ACCWGGT 1 cut(s) 483
CviJI RGCY 9 cut(s) 154, 179, 192, 214, 376, 432, 470, 475, 522
CviKI_1 RGCY 9 cut(s) 154, 179, 192, 214, 376, 432, 470, 475, 522
DpnI GATC 2 cut(s) 278, 368
DpnII GATC 2 cut(s) 276, 366
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 3 cut(s) 88, 122, 167
EarI CTCTTC 3 cut(s) 88, 122, 167
EciI GGCGGA 2 cut(s) 287, 365
Eco57I CTGAAG 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 483
FaqI GGGAC 2 cut(s) 11, 412
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 328
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 328
GsuI CTGGAG 2 cut(s) 418, 426
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 376, 470
HapII CCGG 5 cut(s) 29, 63, 249, 429, 495
HgaI GACGC 2 cut(s) 222, 427
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 233
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 200, 224
HpaII CCGG 5 cut(s) 29, 63, 249, 429, 495
HphI GGTGA 2 cut(s) 30, 107
Hpy166II GTNNAC 3 cut(s) 51, 184, 245
Hpy188I TCNGA 4 cut(s) 92, 205, 295, 481
Hpy188III TCNNGA 2 cut(s) 280, 509
Hpy8I GTNNAC 3 cut(s) 51, 184, 245
Hpy99I CGWCG 5 cut(s) 185, 188, 232, 238, 443
HpyAV CCTTC 5 cut(s) 52, 277, 295, 301, 311
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 467
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 233
HspAI GCGC 1 cut(s) 5
KroI GCCGGC 2 cut(s) 428, 494
KroNI GCCGGC 2 cut(s) 430, 496
Kzo9I GATC 2 cut(s) 276, 366
LguI GCTCTTC 2 cut(s) 122, 167
LmnI GCTCC 1 cut(s) 437
MabI ACCWGGT 1 cut(s) 483
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 278, 368
MbiI CCGCTC 1 cut(s) 160
MboI GATC 2 cut(s) 276, 366
MboII GAAGA 3 cut(s) 75, 139, 154
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 3 cut(s) 228, 273, 504
MnlI CCTC 8 cut(s) 85, 88, 91, 291, 314, 317, 346, 494
MroNI GCCGGC 2 cut(s) 428, 494
MspI CCGG 5 cut(s) 29, 63, 249, 429, 495
MspR9I CCNGG 3 cut(s) 29, 249, 485
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 2 cut(s) 258, 467
NaeI GCCGGC 2 cut(s) 430, 496
NciI CCSGG 2 cut(s) 29, 249
NdeII GATC 2 cut(s) 276, 366
NgoMIV GCCGGC 2 cut(s) 428, 494
NlaIV GGNNCC 1 cut(s) 433
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 113
PciSI GCTCTTC 2 cut(s) 122, 167
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PdiI GCCGGC 2 cut(s) 430, 496
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 232
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
PpsI GAGTC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 483
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 433
SalI GTCGAC 1 cut(s) 182
SapI GCTCTTC 2 cut(s) 122, 167
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 2 cut(s) 276, 366
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 29, 249, 485
SetI ASST 7 cut(s) 72, 77, 109, 120, 393, 477, 489
SexAI ACCWGGT 1 cut(s) 483
SgrDI CGTCGACG 1 cut(s) 182
SsiI CCGC 6 cut(s) 101, 158, 197, 272, 327, 350
StyD4I CCNGG 3 cut(s) 27, 247, 483
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 183, 369
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 1 cut(s) 200
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspGWI ACGGA 2 cut(s) 76, 137
TspRI CASTG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.