Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8215220.1

Orthogroup ID

OG0015468

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 714

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8215220.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 422 bp

atgtcggagaggaaggagaaggagaaagaaggaggaggcggcgatttgttgagtggagtggcggaggagattagggagatcgagtggcctgtgttcggcaaggtcttggggactactggagttgtgcttggggttattgccggctccagcgtcgttttgctcactgtcaatgccgttttggccgagctgtccgaccggctttacaaaggtagactaaagaatgggatccaagttgttattaggtgcctgcttgtatcaaagaaatacacaattcgaaatcttaaactctccggttggattttgcttgccaagcttcgtcacccgtatttaggacactgcctcgacggtggtggagatgattacagtgtgaacaaggtgtatcttgtatctgagtatgtggcaaatgggacctttcgtgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

15.25

Weight (kDa)

9.1

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14870
fragaria_vesca	FvH4_5g07900
malus_domestica	MD13G1193800.v1.1 MD16G1194500.v1.1
prunus_persica	Prupe.1G014400_v2.0.a1
pyrus_communis	pycom13g16610
rosa_chinensis	RchiOBHm_Chr7g0190521
rosa_laevigata	RLG00000004521
rosa_multiflora	Rmu_co8215220.1_g000001 Rmu_sc0000526.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264540
rosa_rugosa	Rorug06G0505000
rosa_samantha	Rh7AG111100 Rh7BG114000 Rh7DG114900
rosa_wichuraiana	Rw7G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	211
AciI	CCGC	2 cut(s)	39, 62
AclWI	GGATC	2 cut(s)	220, 233
AcoI	YGGCCR	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	95, 329
AluBI	AGCT	2 cut(s)	187, 313
AluI	AGCT	2 cut(s)	187, 313
AlwI	GGATC	2 cut(s)	220, 233
AoxI	GGCC	2 cut(s)	86, 180
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	311
AsuII	TTCGAA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	4 cut(s)	145, 227, 245, 409
BpmI	CTGGAG	2 cut(s)	130, 138
Bpu14I	TTCGAA	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 329
Bse118I	RCCGGY	2 cut(s)	140, 195
Bse1I	ACTGG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	95, 329
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	48, 80
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	88, 182
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	141, 196, 291
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	95, 329
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	88, 182
Bsp119I	TTCGAA	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	78, 225
BspACI	CCGC	2 cut(s)	39, 62
BspANI	GGCC	2 cut(s)	88, 182
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	4 cut(s)	145, 227, 245, 409
BspPI	GGATC	2 cut(s)	220, 233
BspT104I	TTCGAA	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	140, 195
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	2 cut(s)	140, 195
BssMI	GATC	2 cut(s)	78, 225
Bst4CI	ACNGT	3 cut(s)	166, 347, 365
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	142, 248, 306
BstDEI	CTNAG	1 cut(s)	390
BstKTI	GATC	2 cut(s)	81, 228
BstMBI	GATC	2 cut(s)	78, 225
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 310
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	88, 182
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	3 cut(s)	162, 334, 370
Cac8I	GCNNGC	3 cut(s)	142, 248, 306
Cfr10I	RCCGGY	2 cut(s)	140, 195
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	1 cut(s)	139
CviJI	RGCY	6 cut(s)	88, 144, 182, 187, 199, 313
CviKI_1	RGCY	6 cut(s)	88, 144, 182, 187, 199, 313
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	80, 227
DpnII	GATC	2 cut(s)	78, 225
EaeI	YGGCCR	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	408
FaiI	YATR	1 cut(s)	396
FaqI	GGGAC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	130, 138
HaeIII	GGCC	2 cut(s)	88, 182
HapII	CCGG	3 cut(s)	141, 196, 291
HgaI	GACGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	311
HpaII	CCGG	3 cut(s)	141, 196, 291
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	212, 370
Hpy188I	TCNGA	3 cut(s)	7, 193, 391
Hpy8I	GTNNAC	2 cut(s)	212, 370
Hpy99I	CGWCG	2 cut(s)	155, 347
HpyAV	CCTTC	3 cut(s)	7, 13, 23
HpyCH4III	ACNGT	3 cut(s)	166, 347, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 310
HpyF3I	CTNAG	1 cut(s)	390
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	78, 225
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	7 cut(s)	102, 102, 154, 160, 209, 260, 304
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	80, 227
MboI	GATC	2 cut(s)	78, 225
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	1 cut(s)	270
MmeI	TCCRAC	2 cut(s)	216, 275
MnlI	CCTC	5 cut(s)	3, 26, 29, 58, 350
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	1 cut(s)	282
MspI	CCGG	3 cut(s)	141, 196, 291
MwoI	GCNNNNNNNGC	2 cut(s)	179, 310
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	2 cut(s)	78, 225
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	4 cut(s)	145, 227, 245, 409
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	145, 227, 245, 409
PspPI	GGNCC	1 cut(s)	408
PspPPI	RGGWCCY	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	78, 225
Sau96I	GGNCC	1 cut(s)	408
SetI	ASST	7 cut(s)	105, 189, 211, 245, 315, 378, 413
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	1 cut(s)	408
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	2 cut(s)	39, 62
TaaI	ACNGT	3 cut(s)	166, 347, 365
TaqI	TCGA	3 cut(s)	81, 274, 342
TasI	AATT	1 cut(s)	270
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	3 cut(s)	169, 341, 370
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspRI	CASTG	3 cut(s)	169, 341, 370
VpaK11BI	GGWCC	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.