Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000526.1

Orthogroup ID

OG0015468

Physical Location & Seq

Genomic Coordinates Reverse (-)

23839 .. 24264

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000526.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ctgcaaccgccacgtgtcagtcacctgacggagaagagcaagagcaagagaaagccaccactcttcagttcaatcaaagccgtcgacgaaagccaagcggattccgacaccgagccaaaaggagagtcgtcggtgtcggcgagtgaacccggcgagttgagcgagttgggggcggagatcaagaaggcgatgtcggagaggaaggagaaggagaaagaaggaggaggcggcgatttgttgagtggagtggcggaggagattagggagatcgagtggcctgtgttcggcaaggtcttggggactactggagttgtgcttggggttattgccggctccagcgtcgttttgctcactgtcaatgccgttttggccgagctgtccgaccgggttttcgccggcaggggcgttcaggattttttcggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

141

Amino Acids

14.88

Weight (kDa)

5.03

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14870
fragaria_vesca	FvH4_5g07900
malus_domestica	MD13G1193800.v1.1 MD16G1194500.v1.1
prunus_persica	Prupe.1G014400_v2.0.a1
pyrus_communis	pycom13g16610
rosa_chinensis	RchiOBHm_Chr7g0190521
rosa_laevigata	RLG00000004521
rosa_multiflora	Rmu_co8215220.1_g000001 Rmu_sc0000526.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264540
rosa_rugosa	Rorug06G0505000
rosa_samantha	Rh7AG111100 Rh7BG114000 Rh7DG114900
rosa_wichuraiana	Rw7G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	5 cut(s)	8, 98, 173, 228, 251
AcoI	YGGCCR	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	72
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
AoxI	GGCC	2 cut(s)	275, 369
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 374, 406
AsuC2I	CCSGG	2 cut(s)	150, 386
AsuHPI	GGTGA	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	14
BceAI	ACGGC	2 cut(s)	65, 347
BcnI	CCSGG	2 cut(s)	150, 386
BglI	GCCNNNNNGGC	1 cut(s)	368
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	2 cut(s)	150, 386
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	2 cut(s)	150, 386
BpmI	CTGGAG	2 cut(s)	319, 327
BpuMI	CCSGG	2 cut(s)	150, 386
BsaAI	YACGTR	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	2 cut(s)	329, 395
Bse1I	ACTGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	237, 269
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	2 cut(s)	277, 371
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	4 cut(s)	150, 330, 385, 396
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	277, 371
Bsp143I	GATC	2 cut(s)	177, 267
BspACI	CCGC	5 cut(s)	8, 98, 173, 228, 251
BspANI	GGCC	2 cut(s)	277, 371
BspLI	GGNNCC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	329, 395
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	2 cut(s)	329, 395
BssMI	GATC	2 cut(s)	177, 267
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	29, 68
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	331, 397
BstKTI	GATC	2 cut(s)	180, 270
BstMBI	GATC	2 cut(s)	177, 267
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 368
BstSCI	CCNGG	2 cut(s)	148, 384
BsuRI	GGCC	2 cut(s)	277, 371
BtgZI	GCGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	331, 397
Cfr10I	RCCGGY	2 cut(s)	329, 395
CseI	GACGC	1 cut(s)	328
CviJI	RGCY	9 cut(s)	55, 80, 93, 115, 277, 333, 371, 376, 423
CviKI_1	RGCY	9 cut(s)	55, 80, 93, 115, 277, 333, 371, 376, 423
DpnI	GATC	2 cut(s)	179, 269
DpnII	GATC	2 cut(s)	177, 267
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	29, 68
EarI	CTCTTC	2 cut(s)	29, 68
EciI	GGCGGA	2 cut(s)	188, 266
Eco57I	CTGAAG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	14
FaqI	GGGAC	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
GsuI	CTGGAG	2 cut(s)	319, 327
HaeIII	GGCC	2 cut(s)	277, 371
HapII	CCGG	4 cut(s)	150, 330, 385, 396
HgaI	GACGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	101, 125
HpaII	CCGG	4 cut(s)	150, 330, 385, 396
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	2 cut(s)	85, 146
Hpy188I	TCNGA	3 cut(s)	106, 196, 382
Hpy188III	TCNNGA	2 cut(s)	181, 410
Hpy8I	GTNNAC	2 cut(s)	85, 146
Hpy99I	CGWCG	4 cut(s)	86, 89, 133, 344
HpyAV	CCTTC	4 cut(s)	178, 196, 202, 212
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 368
HpySE526I	ACGT	1 cut(s)	13
KroI	GCCGGC	2 cut(s)	329, 395
KroNI	GCCGGC	2 cut(s)	331, 397
Kzo9I	GATC	2 cut(s)	177, 267
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	338
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	179, 269
MboI	GATC	2 cut(s)	177, 267
MboII	GAAGA	2 cut(s)	46, 55
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	3 cut(s)	129, 174, 405
MnlI	CCTC	4 cut(s)	192, 215, 218, 247
MroNI	GCCGGC	2 cut(s)	329, 395
MspI	CCGG	4 cut(s)	150, 330, 385, 396
MspR9I	CCNGG	2 cut(s)	150, 386
MwoI	GCNNNNNNNGC	2 cut(s)	159, 368
NaeI	GCCGGC	2 cut(s)	331, 397
NciI	CCSGG	2 cut(s)	150, 386
NdeII	GATC	2 cut(s)	177, 267
NgoMIV	GCCGGC	2 cut(s)	329, 395
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PdiI	GCCGGC	2 cut(s)	331, 397
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	133
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	14
PspCI	CACGTG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	334
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	29
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	2 cut(s)	177, 267
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	150, 386
SetI	ASST	4 cut(s)	16, 27, 294, 378
SgrDI	CGTCGACG	1 cut(s)	83
SsiI	CCGC	5 cut(s)	8, 98, 173, 228, 251
StyD4I	CCNGG	2 cut(s)	148, 384
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	84, 270
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.