Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015468

Physical Location & Seq

Genomic Coordinates Reverse (-)

1058525 .. 1059136

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G014400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTCTACGTATGTCCGTACAGTTCCCGATAACCCCAACCTTCCTGTTACCCACAAAAGGCGGTCACGTTAACTCATCCGTACGGTTGAAACCGCCATGTGCCTGTAACCATTCAGTTTCCCAGTTCCAGCCCAGACGGCCCCTAACAGACCCGAGGAGCAAGCAATCGCTTCTCAAAGCCGTTGACGAAAGCCAAGCAAATTCCGAGTCCGGGCCCGAATCGGTGAGCACCCAGCAGAAAGAATCGGCGGGAGATGGAGAATCGGCGGCGAGTCAACCCGTCGAGTTGAGCGAGTTGGGGAAGGAGATCAAGGAGGCTATGCAGAAGAGGAAGGAGGAGAAAGACGGAGACTTTCTGAGCGGAGTGGCGGATGAGGTTAGGGAGATCGAGTGGCCTGCGTTCGCGAAGGTGTTGGGGACCACTGGTGTGGTGCTTGGGGTCATTGCTGGCTCCAGCGTCGTTTTGCTCACTGTCAATGCCGTTTTGGCTGAGTTTTCCGACCAGGTTTTTGCCGGCAAAGGGGTTCAGGATTTTTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

182

Amino Acids

19.36

Weight (kDa)

5.29

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14870
fragaria_vesca	FvH4_5g07900
malus_domestica	MD13G1193800.v1.1 MD16G1194500.v1.1
prunus_persica	Prupe.1G014400_v2.0.a1
pyrus_communis	pycom13g16610
rosa_chinensis	RchiOBHm_Chr7g0190521
rosa_laevigata	RLG00000004521
rosa_multiflora	Rmu_co8215220.1_g000001 Rmu_sc0000526.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264540
rosa_rugosa	Rorug06G0505000
rosa_samantha	Rh7AG111100 Rh7BG114000 Rh7DG114900
rosa_wichuraiana	Rw7G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	363
AccII	CGCG	1 cut(s)	407
AciI	CCGC	6 cut(s)	63, 95, 251, 269, 363, 371
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	2 cut(s)	21, 84
AfiI	CCNNNNNNNGG	3 cut(s)	59, 213, 522
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	504
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	1 cut(s)	543
AluI	AGCT	1 cut(s)	543
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	3 cut(s)	140, 215, 395
ApaI	GGGCCC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 494, 526
AspS9I	GGNCC	4 cut(s)	141, 215, 216, 420
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	233
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	3 cut(s)	155, 167, 467
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	506
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	345
BglI	GCCNNNNNGGC	2 cut(s)	139, 488
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	214, 506
Bme18I	GGWCC	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	4 cut(s)	141, 215, 216, 420
BmiI	GGNNCC	4 cut(s)	143, 217, 421, 454
BmrFI	CCNGG	2 cut(s)	214, 506
BmrI	ACTGGG	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 213, 522
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	124, 430
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	77, 379
BseLI	CCNNNNNNNGG	3 cut(s)	59, 213, 522
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	350, 483
BseNI	ACTGG	2 cut(s)	124, 430
BseRI	GAGGAG	2 cut(s)	172, 353
BseSI	GKGCMC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	3 cut(s)	142, 217, 397
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	213, 516
BsiWI	CGTACG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	59, 213, 522
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	142, 217, 397
BsoBI	CYCGRG	1 cut(s)	154
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	219, 233
Bsp143I	GATC	2 cut(s)	309, 387
Bsp68I	TCGCGA	1 cut(s)	407
BspACI	CCGC	6 cut(s)	63, 95, 251, 269, 363, 371
BspANI	GGCC	3 cut(s)	142, 217, 397
BspCNI	CTCAG	2 cut(s)	351, 484
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	4 cut(s)	143, 217, 421, 454
BsrBI	CCGCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	124, 430
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	309, 387
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	3 cut(s)	24, 87, 475
Bst6I	CTCTTC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	164, 399, 451, 517
BstDEI	CTNAG	2 cut(s)	359, 492
BstF5I	GGATG	2 cut(s)	77, 379
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	312, 390
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	2 cut(s)	309, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 488
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	212, 504
BstSLI	GKGCMC	1 cut(s)	219
BstSNI	TACGTA	1 cut(s)	11
BstUI	CGCG	1 cut(s)	407
BstXI	CCANNNNNNTGG	1 cut(s)	430
BsuRI	GGCC	3 cut(s)	142, 217, 397
BtsCI	GGATG	2 cut(s)	77, 379
BtsIMutI	CAGTG	2 cut(s)	423, 471
BtuMI	TCGCGA	1 cut(s)	407
Cac8I	GCNNGC	4 cut(s)	164, 399, 451, 517
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	4 cut(s)	141, 215, 216, 420
CseI	GACGC	1 cut(s)	448
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	20, 83
CviAII	CATG	1 cut(s)	99
CviQI	GTAC	2 cut(s)	20, 83
DdeI	CTNAG	2 cut(s)	359, 492
DpnI	GATC	2 cut(s)	311, 389
DpnII	GATC	2 cut(s)	309, 387
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
EciI	GGCGGA	1 cut(s)	386
Eco105I	TACGTA	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	102
FaiI	YATR	3 cut(s)	14, 100, 323
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	1 cut(s)	98
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	64, 386
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	142, 217, 397
HapII	CCGG	2 cut(s)	213, 516
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	102
HincII	GTYRAC	3 cut(s)	73, 187, 278
HindII	GTYRAC	3 cut(s)	73, 187, 278
HinfI	GANTC	5 cut(s)	209, 221, 245, 263, 274
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	213, 516
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	73, 187, 278
Hpy188I	TCNGA	3 cut(s)	208, 360, 502
Hpy188III	TCNNGA	3 cut(s)	28, 406, 530
Hpy8I	GTNNAC	3 cut(s)	73, 187, 278
Hpy99I	CGWCG	2 cut(s)	287, 464
HpyAV	CCTTC	4 cut(s)	52, 298, 328, 403
HpyCH4III	ACNGT	3 cut(s)	24, 87, 475
HpyCH4IV	ACGT	2 cut(s)	10, 69
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 488
HpyF3I	CTNAG	2 cut(s)	359, 492
HpySE526I	ACGT	2 cut(s)	10, 69
Hsp92II	CATG	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	515
KroNI	GCCGGC	1 cut(s)	517
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	309, 387
LmnI	GCTCC	2 cut(s)	159, 458
MabI	ACCWGGT	1 cut(s)	504
MaeII	ACGT	2 cut(s)	10, 69
MaeIII	GTNAC	3 cut(s)	48, 65, 107
MalI	GATC	2 cut(s)	311, 389
MbiI	CCGCTC	1 cut(s)	363
MboI	GATC	2 cut(s)	309, 387
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	219, 233
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	2 cut(s)	218, 283
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	5 cut(s)	150, 310, 324, 331, 370
MroNI	GCCGGC	1 cut(s)	515
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	543
MspI	CCGG	2 cut(s)	213, 516
MspR9I	CCNGG	2 cut(s)	214, 506
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	139, 488
NaeI	GCCGGC	1 cut(s)	517
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	2 cut(s)	309, 387
NgoMIV	GCCGGC	1 cut(s)	515
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	4 cut(s)	143, 217, 421, 454
NmuCI	GTSAC	1 cut(s)	65
NruI	TCGCGA	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	517
PfeI	GAWTC	3 cut(s)	221, 245, 263
Pfl23II	CGTACG	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	217, 282
PpsI	GAGTC	2 cut(s)	217, 282
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	504
PspLI	CGTACG	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	143, 217, 421, 454
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	4 cut(s)	141, 215, 216, 420
PvuII	CAGCTG	1 cut(s)	543
RruI	TCGCGA	1 cut(s)	407
RsaI	GTAC	2 cut(s)	21, 84
RsaNI	GTAC	2 cut(s)	20, 83
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	309, 387
Sau96I	GGNCC	4 cut(s)	141, 215, 216, 420
SchI	GAGTC	2 cut(s)	218, 283
ScrFI	CCNGG	2 cut(s)	214, 506
SduI	GDGCHC	2 cut(s)	219, 233
SetI	ASST	7 cut(s)	13, 44, 72, 381, 414, 510, 545
SexAI	ACCWGGT	1 cut(s)	504
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	428
SnaBI	TACGTA	1 cut(s)	11
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	6 cut(s)	63, 95, 251, 269, 363, 371
StyD4I	CCNGG	2 cut(s)	212, 504
TaaI	ACNGT	3 cut(s)	24, 87, 475
TaiI	ACGT	2 cut(s)	13, 72
TaqI	TCGA	2 cut(s)	285, 390
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	221, 245, 263
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	430, 478
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspGWI	ACGGA	3 cut(s)	7, 70, 363
TspRI	CASTG	2 cut(s)	430, 478
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.