AT4G15563

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006320
Physical Location & Seq
Forward (+)
8890211 .. 8892577
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15563.7

Sequence Viewer

Length: 504 bp
ATGCAACACAAGGAAATGGCATCAAGAGCTTCCGAGGTGATTAAATATGTGACTAAGTCTCCTGCTACGTTGTCTTTAGAGGCAGGTATATATCTGCACGCGGTTGAAACCATGAGCTCGATGCGGTTTGGATTTCAAGATGTGGAGTTATTTTTCTTCAAACCAAACTTAAGTGTGCTGCTCAACCTCATTGGACTCATTTACTGCATACAACACTTGAAACCGCGGCGAGAGCAAGTCGTGGATGTGCTAAGGCAATGTGGAATCTCAGAGCAGCTAGTTTGGGTGAAATGGTTAACGTTAGGTCGATGGTCAGGTGGGAGTCGAATGAGAGACGACATCGTGTCGCGTCAGGTCTCTCTAGTCGATGTTGTAACAGGGAAAGAAGAAACGGTTCTACGAGTGCTTCAACGAGGAGTTGTTCACGAAGTTCTACGTGTTTGTATCTCAACCGTTGATCTTGCCTGTGCACCTTGCAGCAGTAGCACCATCAGAAACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

167

Amino Acids

18.91

Weight (kDa)

8.9

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 74
AccII CGCG 3 cut(s) 101, 226, 349
AciI CCGC 4 cut(s) 101, 124, 224, 226
AclI AACGTT 1 cut(s) 299
AflII CTTAAG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 5 cut(s) 107, 137, 160, 220, 410
AhdI GACNNNNNGTC 1 cut(s) 343
AluBI AGCT 3 cut(s) 29, 117, 277
AluI AGCT 3 cut(s) 29, 117, 277
Alw21I GWGCWC 2 cut(s) 119, 472
Alw26I GTCTC 3 cut(s) 63, 327, 361
Alw44I GTGCAC 1 cut(s) 468
ApaLI GTGCAC 1 cut(s) 468
ApeKI GCWGC 3 cut(s) 178, 274, 477
Asp700I GAANNNNTTC 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 49, 298
BaeGI GKGCMC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 119, 472
BbvI GCAGC 3 cut(s) 165, 286, 489
BccI CCATC 2 cut(s) 303, 497
BcoDI GTCTC 3 cut(s) 63, 327, 361
BfaI CTAG 2 cut(s) 278, 362
BfrI CTTAAG 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 4 cut(s) 179, 227, 275, 478
BlsI GCNGC 4 cut(s) 180, 228, 276, 479
BmeRI GACNNNNNGTC 1 cut(s) 343
BmsI GCATC 2 cut(s) 29, 111
Bpu10I CCTNAGC 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 33, 224
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse3DI GCAATG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 33, 224
BseGI GGATG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 3 cut(s) 165, 286, 489
BsgI GTGCAG 1 cut(s) 80
Bsh1236I CGCG 3 cut(s) 101, 226, 349
BsiHKAI GWGCWC 2 cut(s) 119, 472
BsmAI GTCTC 3 cut(s) 63, 327, 361
BsmBI CGTCTC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 119, 472
Bsp143I GATC 1 cut(s) 457
BspACI CCGC 4 cut(s) 101, 124, 224, 226
BspCNI CTCAG 1 cut(s) 281
BspFNI CGCG 3 cut(s) 101, 226, 349
BspMI ACCTGC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 33, 224
BssMI GATC 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 394, 454
BstAFI CTTAAG 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 54, 251, 268
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 3 cut(s) 101, 226, 349
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 3 cut(s) 63, 327, 361
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 3 cut(s) 26, 232, 483
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 3 cut(s) 101, 226, 349
BstV1I GCAGC 3 cut(s) 165, 286, 489
BtgI CCRYGG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 99
Cfr42I CCGCGG 1 cut(s) 227
CseI GACGC 1 cut(s) 338
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 29, 117, 277
CviKI_1 RGCY 3 cut(s) 29, 117, 277
DdeI CTNAG 3 cut(s) 54, 251, 268
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
DriI GACNNNNNGTC 1 cut(s) 343
Eam1105I GACNNNNNGTC 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 1 cut(s) 115
FaiI YATR 5 cut(s) 48, 89, 91, 113, 209
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 179, 227, 275, 478
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 4 cut(s) 179, 227, 275, 478
FspBI CTAG 2 cut(s) 278, 362
GluI GCNGC 4 cut(s) 179, 227, 275, 478
HgaI GACGC 1 cut(s) 338
Hin1II CATG 1 cut(s) 115
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 195, 264, 322
HpaI GTTAAC 1 cut(s) 297
HphI GGTGA 2 cut(s) 49, 298
Hpy166II GTNNAC 3 cut(s) 297, 424, 470
Hpy188I TCNGA 3 cut(s) 34, 271, 494
Hpy188III TCNNGA 3 cut(s) 24, 137, 425
Hpy8I GTNNAC 3 cut(s) 297, 424, 470
HpyCH4III ACNGT 2 cut(s) 394, 454
HpyCH4IV ACGT 3 cut(s) 68, 299, 436
HpyCH4V TGCA 5 cut(s) 4, 97, 207, 470, 477
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 232, 483
HpyF3I CTNAG 3 cut(s) 54, 251, 268
HpySE526I ACGT 3 cut(s) 68, 299, 436
Hsp92II CATG 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 297
KspI CCGCGG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 457
LpnPI CCDG 6 cut(s) 69, 75, 300, 338, 363, 478
Lsp1109I GCAGC 3 cut(s) 165, 286, 489
LweI GCATC 2 cut(s) 29, 111
MaeI CTAG 2 cut(s) 278, 362
MaeII ACGT 3 cut(s) 68, 299, 436
MaeIII GTNAC 2 cut(s) 49, 373
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MboII GAAGA 2 cut(s) 148, 398
MhlI GDGCHC 2 cut(s) 119, 472
MlyI GAGTC 2 cut(s) 189, 331
MnlI CCTC 4 cut(s) 28, 73, 197, 407
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 3 cut(s) 42, 170, 296
MspA1I CMGCKG 1 cut(s) 226
MspCI CTTAAG 1 cut(s) 169
MvnI CGCG 3 cut(s) 101, 226, 349
MwoI GCNNNNNNNGC 3 cut(s) 26, 232, 483
NdeII GATC 1 cut(s) 457
NlaIII CATG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 4 cut(s) 180, 228, 276, 479
PleI GAGTC 2 cut(s) 189, 330
PpsI GAGTC 2 cut(s) 189, 330
Ppu21I YACGTR 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 299
PsyI GACNNNGTC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 119
SacII CCGCGG 1 cut(s) 227
SaqAI TTAA 3 cut(s) 42, 170, 296
SatI GCNGC 4 cut(s) 179, 227, 275, 478
Sau3AI GATC 1 cut(s) 457
SchI GAGTC 2 cut(s) 189, 331
SduI GDGCHC 2 cut(s) 119, 472
SfaNI GCATC 2 cut(s) 29, 111
Sfr303I CCGCGG 1 cut(s) 227
SgrBI CCGCGG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SsiI CCGC 4 cut(s) 101, 124, 224, 226
SspMI CTAG 2 cut(s) 278, 362
SstI GAGCTC 1 cut(s) 119
TaaI ACNGT 2 cut(s) 394, 454
TaiI ACGT 3 cut(s) 71, 302, 439
TaqI TCGA 4 cut(s) 119, 307, 325, 366
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 42, 170, 296
Tru9I TTAA 3 cut(s) 42, 170, 296
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 3 cut(s) 178, 274, 477
Tsp45I GTSAC 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 169
VneI GTGCAC 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 278, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.