Rh6BG471800

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006320
Physical Location & Seq
Forward (+)
67914257 .. 67917555
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG471800.1

Sequence Viewer

Length: 726 bp
ATGTTTTTGTGCTCTGTATTGGAAACAAAGGTGTGGGATTTGTGTGCGTTGGCTTGTTGTTGTAGGTGTTGGAAGGAGCTTTGTGGGTCTGATTGCCTATGGGAGTCTCTAGCAAAAAAGAGATGGGCTTCTCTGGAATTCTCAGACGAGTCTGAGTCTGAGTCTTCATCTTCCACTGCAATCAGAAGGCCGAAGGACAAGGGGTGGAGGCCCTTTTACGAGGAGGTTCACGATCATAAGGCTGCTAGTGCTGCTTTGGTGATCGATTATGTGGATAAATGCTCAATATATGGATCTCTTGAGGTTGCACAATATCAAAGGGCGATTGAAGACCTGCACGCGATGAGATTTGGATATGAGGATGTAGTATTGCTCCTTTTGAAGCCAAGTCTTAGTGTGCAGATCAACCTACTCGGTTTGCATTACTGCATGAATTGGCTTAAAGTGCCGGTCAAATGTGTTGTGAAAGAACTAAGAATTAGGAAGTTAGCGGAGCGGCGAGTTTGTGTTAAATGGTGGACGCTTGGCAAATGGTCCAACGGTTACGGTATTCGCATGAATGACGAACTACATTCTCATCAATTCACATTGTTAGATGTTGCACTTGCAAGAGCAGAGGAGGTTCTTGCAGTGCTGTATCGAGGTGCTATTCATGAGGTACTACGTGTTCAGATTATGGTGGCAAAGCCCTCAAGTACACCTTCATCTTCCCTACGTATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

241

Amino Acids

27.65

Weight (kDa)

8.22

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 496
AccII CGCG 1 cut(s) 341
AciI CCGC 2 cut(s) 491, 496
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 2 cut(s) 660, 697
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 2 cut(s) 329, 382
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 301
AoxI GGCC 2 cut(s) 188, 209
ApeKI GCWGC 2 cut(s) 242, 251
ApoI RAATTY 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 210, 534
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 534
BbsI GAAGAC 2 cut(s) 156, 336
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 229, 238
BccI CCATC 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 110, 246
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 3 cut(s) 243, 252, 497
BlsI GCNGC 3 cut(s) 244, 253, 498
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 210, 534
BpiI GAAGAC 2 cut(s) 156, 336
BpuEI CTTGAG 2 cut(s) 320, 676
Bsa29I ATCGAT 1 cut(s) 264
BsaAI YACGTR 2 cut(s) 665, 716
Bse118I RCCGGY 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 264
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 144, 150, 156
BseRI GAGGAG 2 cut(s) 236, 632
BseXI GCAGC 2 cut(s) 229, 238
BsgI GTGCAG 2 cut(s) 320, 419
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 2 cut(s) 190, 211
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 2 cut(s) 190, 211
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 4 cut(s) 232, 261, 293, 402
BspACI CCGC 2 cut(s) 491, 496
BspANI GGCC 2 cut(s) 190, 211
BspCNI CTCAG 3 cut(s) 145, 151, 155
BspDI ATCGAT 1 cut(s) 264
BspFNI CGCG 1 cut(s) 341
BspHI TCATGA 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 342
BspPI GGATC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 496
BsrFI RCCGGY 1 cut(s) 448
BssAI RCCGGY 1 cut(s) 448
BssMI GATC 4 cut(s) 232, 261, 293, 402
Bst4CI ACNGT 2 cut(s) 542, 548
BstBAI YACGTR 2 cut(s) 665, 716
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 5 cut(s) 142, 153, 159, 392, 473
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 4 cut(s) 235, 264, 296, 405
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 4 cut(s) 232, 261, 293, 402
BstMWI GCNNNNNNNGC 3 cut(s) 248, 251, 445
BstSNI TACGTA 1 cut(s) 716
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 229, 238
BstV2I GAAGAC 2 cut(s) 156, 336
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 2 cut(s) 190, 211
BsuTUI ATCGAT 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 2 cut(s) 174, 636
BtsIMutI CAGTG 2 cut(s) 174, 636
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 1 cut(s) 652
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 210, 534
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 1 cut(s) 529
Csp6I GTAC 2 cut(s) 659, 696
CviAII CATG 3 cut(s) 430, 556, 653
CviJI RGCY 9 cut(s) 53, 79, 128, 190, 211, 242, 385, 439, 688
CviKI_1 RGCY 9 cut(s) 53, 79, 128, 190, 211, 242, 385, 439, 688
CviQI GTAC 2 cut(s) 659, 696
DdeI CTNAG 5 cut(s) 142, 153, 159, 392, 473
DpnI GATC 4 cut(s) 234, 263, 295, 404
DpnII GATC 4 cut(s) 232, 261, 293, 402
Eco105I TACGTA 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 137
FaeI CATG 3 cut(s) 433, 559, 656
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FatI CATG 3 cut(s) 429, 555, 652
Fnu4HI GCNGC 3 cut(s) 243, 252, 497
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 3 cut(s) 243, 252, 497
FspBI CTAG 2 cut(s) 110, 246
GluI GCNGC 3 cut(s) 243, 252, 497
HaeIII GGCC 2 cut(s) 190, 211
HapII CCGG 1 cut(s) 449
HgaI GACGC 1 cut(s) 529
Hin1II CATG 3 cut(s) 433, 559, 656
HinfI GANTC 4 cut(s) 104, 149, 155, 161
HpaII CCGG 1 cut(s) 449
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 3 cut(s) 229, 519, 698
Hpy188I TCNGA 7 cut(s) 91, 145, 154, 160, 185, 672, 725
Hpy188III TCNNGA 4 cut(s) 134, 230, 299, 653
Hpy8I GTNNAC 3 cut(s) 229, 519, 698
HpyAV CCTTC 4 cut(s) 67, 180, 187, 711
HpyCH4III ACNGT 2 cut(s) 542, 548
HpyCH4IV ACGT 2 cut(s) 664, 715
HpyCH4V TGCA 9 cut(s) 179, 308, 337, 400, 421, 429, 602, 608, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 251, 445
HpyF3I CTNAG 5 cut(s) 142, 153, 159, 392, 473
HpySE526I ACGT 2 cut(s) 664, 715
Hsp92II CATG 3 cut(s) 433, 559, 656
Kzo9I GATC 4 cut(s) 232, 261, 293, 402
LmnI GCTCC 3 cut(s) 76, 378, 493
LpnPI CCDG 3 cut(s) 119, 347, 462
Lsp1109I GCAGC 2 cut(s) 229, 238
MaeI CTAG 2 cut(s) 110, 246
MaeII ACGT 2 cut(s) 664, 715
MaeIII GTNAC 1 cut(s) 542
MalI GATC 4 cut(s) 234, 263, 295, 404
MbiI CCGCTC 1 cut(s) 496
MboI GATC 4 cut(s) 232, 261, 293, 402
MboII GAAGA 4 cut(s) 156, 162, 341, 699
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 4 cut(s) 137, 433, 477, 581
MlyI GAGTC 4 cut(s) 113, 158, 164, 170
MmeI TCCRAC 2 cut(s) 50, 561
MseI TTAA 2 cut(s) 441, 510
MspI CCGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 248, 251, 445
NdeII GATC 4 cut(s) 232, 261, 293, 402
NlaIII CATG 3 cut(s) 433, 559, 656
PagI TCATGA 1 cut(s) 652
PkrI GCNGC 3 cut(s) 244, 253, 498
PleI GAGTC 4 cut(s) 112, 157, 163, 169
PpsI GAGTC 4 cut(s) 112, 157, 163, 169
Ppu21I YACGTR 2 cut(s) 665, 716
PspPI GGNCC 2 cut(s) 210, 534
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 2 cut(s) 660, 697
RsaNI GTAC 2 cut(s) 659, 696
SaqAI TTAA 2 cut(s) 441, 510
SatI GCNGC 3 cut(s) 243, 252, 497
Sau3AI GATC 4 cut(s) 232, 261, 293, 402
Sau96I GGNCC 2 cut(s) 210, 534
SchI GAGTC 4 cut(s) 113, 158, 164, 170
SduI GDGCHC 1 cut(s) 14
SinI GGWCC 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 299, 691
SmoI CTYRAG 2 cut(s) 299, 691
SnaBI TACGTA 1 cut(s) 716
Sse9I AATT 4 cut(s) 137, 433, 477, 581
SsiI CCGC 2 cut(s) 491, 496
SspMI CTAG 2 cut(s) 110, 246
TaaI ACNGT 2 cut(s) 542, 548
TaiI ACGT 2 cut(s) 667, 718
TaqI TCGA 2 cut(s) 264, 640
TasI AATT 4 cut(s) 137, 433, 477, 581
TatI WGTACW 1 cut(s) 695
TauI GCSGC 1 cut(s) 499
Tru1I TTAA 2 cut(s) 441, 510
Tru9I TTAA 2 cut(s) 441, 510
TscAI CASTG 2 cut(s) 181, 636
TseI GCWGC 2 cut(s) 242, 251
TspDTI ATGAA 5 cut(s) 156, 446, 572, 641, 693
TspRI CASTG 2 cut(s) 181, 636
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 1 cut(s) 137
XspI CTAG 2 cut(s) 110, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.