Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Forward (+)

874933 .. 876694

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAAACTCCAATGAGGTGGAAAGCGGAAGGGGCAGAAGAAGATAGTCCCCAACAAATTATCAAGTCAAATACTTCCCCCTTCTCATTTCAGAGGTGCACGCAAAGCAAAATGAGCTCTCTTCTTCCTCTCCACGTTCCGGATGATATTGCCCTCCAAATTGCTTCCTTGTTACCGGTGTGGGATTTGTGCGCGTTGGGCAGCTGTTCTCGGTTTTGGAGGGAGCTCTGTAAGTCGGATTGCGTATGGGAGTGTCTGGCACGACGGCGATGGCCTCTTCTGGAATTTTCCGATCATGGGTCGTCTTCTTCTTCTTCCACTGCAATCGAAAAGCCCACGTCCATGGGGTGGAGGAGCTTTTACATCGAGCTGCACAACGAGAAGGCCGCGATTGCTGCCTCGGTGGTTCAATTCGTGGAGAAATGCTCGTCGTCTGAATCCCTTGAGGTTGGAGAGTATCAGAAGGCGATGCGAAATTTGAACCAACTGCAATTCGGATATCAGGATGTGGAAATGTTTCTTTTCAAACCAAAGCTTACTGTGCTTGTTAACCTACTTGGTTTGCACTACTGCCTGAATTGGCTGAGAGTACCGGCTGAATGTGTCCTGAAAGCGCTCCAGAGTAGTGAGATATCGGAGCGGCAAGCTTGTGTAAAATGGTGGACGCTTGGGAGATGGTCACATGGCTACCGCATGCGGGATGAGTTATGTTCCCGGTGCTTCACTCTGTTAGATTTTGGATTGGCCAAACAAGAGGAGGTTCTCGCTGTGCTATATCGAGGCGCGGTTCATGAGGTACTACGCGTTCAGATCTGTGTTGCCGATCCCTCAAGTACCTCTTGGTCATGCCAAGGAGCACGCAGAGAGGGGAAGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

294

Amino Acids

33.42

Weight (kDa)

7.47

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	45 - 88	6.2e-08	F-box-like
F-box	PF00646	45 - 84	2.8e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	640
AccII	CGCG	4 cut(s)	194, 389, 785, 804
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	6 cut(s)	26, 387, 640, 691, 697, 785
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	2 cut(s)	284, 475
AfaI	GTAC	3 cut(s)	591, 798, 835
AfeI	AGCGCT	1 cut(s)	615
AfiI	CCNNNNNNNGG	4 cut(s)	139, 297, 348, 697
AflIII	ACRYGT	1 cut(s)	802
AgeI	ACCGGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	410, 481, 526
AjiI	CACGTC	1 cut(s)	339
AluBI	AGCT	7 cut(s)	117, 204, 226, 357, 370, 535, 647
AluI	AGCT	7 cut(s)	117, 204, 226, 357, 370, 535, 647
Alw21I	GWGCWC	4 cut(s)	101, 119, 228, 859
Alw44I	GTGCAC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	818
Aor13HI	TCCGGA	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	615
AoxI	GGCC	3 cut(s)	272, 384, 744
ApaLI	GTGCAC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	201, 370, 395
ApoI	RAATTY	2 cut(s)	284, 475
AsiGI	ACCGGT	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	3 cut(s)	194, 616, 785
AsuC2I	CCSGG	1 cut(s)	715
BaeGI	GKGCMC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	746
BanII	GRGCYC	2 cut(s)	119, 228
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	4 cut(s)	101, 119, 228, 859
BbvI	GCAGC	3 cut(s)	213, 357, 382
BccI	CCATC	2 cut(s)	264, 669
BceAI	ACGGC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	715
BfoI	RGCGCY	1 cut(s)	617
BglII	AGATCT	1 cut(s)	810
BisI	GCNGC	5 cut(s)	202, 371, 387, 396, 641
BlsI	GCNGC	5 cut(s)	203, 372, 388, 397, 642
Bme1390I	CCNGG	1 cut(s)	715
BmgBI	CACGTC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	715
BmsI	GCATC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	464, 814
BpuMI	CCSGG	1 cut(s)	715
BsaJI	CCNNGG	3 cut(s)	342, 399, 850
BsaWI	WCCGGW	2 cut(s)	139, 175
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 297, 348, 697
Bse118I	RCCGGY	2 cut(s)	175, 592
BseAI	TCCGGA	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	342, 399, 850
BseGI	GGATG	3 cut(s)	148, 511, 706
BseLI	CCNNNNNNNGG	4 cut(s)	139, 297, 348, 697
BseMII	CTCAG	1 cut(s)	575
BseRI	GAGGAG	2 cut(s)	367, 770
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	3 cut(s)	213, 357, 382
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	4 cut(s)	194, 389, 785, 804
BshFI	GGCC	3 cut(s)	274, 386, 746
BshTI	ACCGGT	1 cut(s)	175
BsiHKAI	GWGCWC	4 cut(s)	101, 119, 228, 859
BsiSI	CCGG	4 cut(s)	140, 176, 593, 715
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	4 cut(s)	139, 297, 348, 697
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	274, 386, 746
Bsp1286I	GDGCHC	4 cut(s)	101, 119, 228, 859
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	292, 810, 823
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	6 cut(s)	26, 387, 640, 691, 697, 785
BspANI	GGCC	3 cut(s)	274, 386, 746
BspCNI	CTCAG	1 cut(s)	576
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	4 cut(s)	194, 389, 785, 804
BspHI	TCATGA	1 cut(s)	790
BspPI	GGATC	1 cut(s)	818
BsrBI	CCGCTC	1 cut(s)	640
BsrFI	RCCGGY	2 cut(s)	175, 592
BssAI	RCCGGY	2 cut(s)	175, 592
BssECI	CCNNGG	3 cut(s)	342, 399, 850
BssMI	GATC	3 cut(s)	292, 810, 823
BssT1I	CCWWGG	2 cut(s)	342, 850
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	2 cut(s)	126, 282
BstC8I	GCNNGC	4 cut(s)	101, 645, 695, 859
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	148, 511, 706
BstFNI	CGCG	4 cut(s)	194, 389, 785, 804
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	3 cut(s)	194, 616, 785
BstKTI	GATC	3 cut(s)	295, 813, 826
BstMBI	GATC	3 cut(s)	292, 810, 823
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 105, 114, 198, 392, 395, 541
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	101
BstUI	CGCG	4 cut(s)	194, 389, 785, 804
BstV1I	GCAGC	3 cut(s)	213, 357, 382
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	810
BstXI	CCANNNNNNTGG	2 cut(s)	18, 343
BstYI	RGATCY	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	274, 386, 746
BtgI	CCRYGG	1 cut(s)	342
BtgZI	GCGATG	2 cut(s)	283, 482
BtrI	CACGTC	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	148, 511, 706
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	101, 645, 695, 859
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	3 cut(s)	194, 616, 785
Cfr10I	RCCGGY	2 cut(s)	175, 592
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	3 cut(s)	590, 797, 834
CspAI	ACCGGT	1 cut(s)	175
CviAII	CATG	6 cut(s)	296, 343, 683, 694, 791, 846
CviQI	GTAC	3 cut(s)	590, 797, 834
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	3 cut(s)	294, 812, 825
DpnII	GATC	3 cut(s)	292, 810, 823
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	126, 282
EarI	CTCTTC	2 cut(s)	126, 282
Ecl136II	GAGCTC	2 cut(s)	117, 226
Eco130I	CCWWGG	2 cut(s)	342, 850
Eco24I	GRGCYC	2 cut(s)	119, 228
Eco32I	GATATC	2 cut(s)	500, 633
Eco47III	AGCGCT	1 cut(s)	615
Eco53kI	GAGCTC	2 cut(s)	117, 226
EcoICRI	GAGCTC	2 cut(s)	117, 226
EcoRV	GATATC	2 cut(s)	500, 633
EcoT14I	CCWWGG	2 cut(s)	342, 850
EcoT38I	GRGCYC	2 cut(s)	119, 228
ErhI	CCWWGG	2 cut(s)	342, 850
FaeI	CATG	6 cut(s)	299, 346, 686, 697, 794, 849
FaiI	YATR	9 cut(s)	247, 297, 344, 684, 695, 709, 775, 792, 847
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	6 cut(s)	295, 342, 682, 693, 790, 845
FauI	CCCGC	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	202, 371, 387, 396, 641
FokI	GGATG	3 cut(s)	155, 518, 713
FriOI	GRGCYC	2 cut(s)	119, 228
Fsp4HI	GCNGC	5 cut(s)	202, 371, 387, 396, 641
GlaI	GCGC	3 cut(s)	193, 615, 784
GluI	GCNGC	5 cut(s)	202, 371, 387, 396, 641
GsuI	CTGGAG	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	3 cut(s)	274, 386, 746
HapII	CCGG	4 cut(s)	140, 176, 593, 715
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	3 cut(s)	194, 616, 785
Hin1II	CATG	6 cut(s)	299, 346, 686, 697, 794, 849
Hin6I	GCGC	3 cut(s)	192, 614, 783
HinP1I	GCGC	3 cut(s)	192, 614, 783
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	2 cut(s)	533, 645
HinfI	GANTC	1 cut(s)	437
HpaI	GTTAAC	1 cut(s)	550
HpaII	CCGG	4 cut(s)	140, 176, 593, 715
Hpy166II	GTNNAC	3 cut(s)	99, 550, 663
Hpy188I	TCNGA	8 cut(s)	93, 238, 292, 436, 462, 497, 637, 810
Hpy188III	TCNNGA	6 cut(s)	140, 281, 503, 607, 619, 791
Hpy8I	GTNNAC	3 cut(s)	99, 550, 663
Hpy99I	CGWCG	2 cut(s)	267, 433
HpyAV	CCTTC	4 cut(s)	23, 91, 376, 457
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	2 cut(s)	135, 338
HpyCH4V	TGCA	5 cut(s)	99, 323, 373, 490, 565
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 105, 114, 198, 392, 395, 541
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	2 cut(s)	135, 338
Hsp92II	CATG	6 cut(s)	299, 346, 686, 697, 794, 849
HspAI	GCGC	3 cut(s)	192, 614, 783
Kpn2I	TCCGGA	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	292, 810, 823
LmnI	GCTCC	5 cut(s)	223, 354, 621, 637, 854
Lsp1109I	GCAGC	3 cut(s)	213, 357, 382
LweI	GCATC	1 cut(s)	459
MaeII	ACGT	2 cut(s)	135, 338
MaeIII	GTNAC	2 cut(s)	171, 678
MalI	GATC	3 cut(s)	294, 812, 825
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	3 cut(s)	292, 810, 823
MboII	GAAGA	9 cut(s)	50, 53, 113, 116, 269, 297, 300, 303, 306
MflI	RGATCY	1 cut(s)	810
MhlI	GDGCHC	4 cut(s)	101, 119, 228, 859
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	7 cut(s)	57, 159, 284, 410, 475, 491, 577
MluI	ACGCGT	1 cut(s)	802
MluNI	TGGCCA	1 cut(s)	746
MmeI	TCCRAC	2 cut(s)	216, 430
Mox20I	TGGCCA	1 cut(s)	746
MroI	TCCGGA	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	4 cut(s)	140, 176, 593, 715
MspR9I	CCNGG	1 cut(s)	715
MvnI	CGCG	4 cut(s)	194, 389, 785, 804
MwoI	GCNNNNNNNGC	7 cut(s)	32, 105, 114, 198, 392, 395, 541
NciI	CCSGG	1 cut(s)	715
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	292, 810, 823
NlaIII	CATG	6 cut(s)	299, 346, 686, 697, 794, 849
NmuCI	GTSAC	1 cut(s)	678
NspI	RCATGY	1 cut(s)	697
PaeI	GCATGC	1 cut(s)	697
PagI	TCATGA	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	437
PflMI	CCANNNNNTGG	1 cut(s)	348
PinAI	ACCGGT	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	203, 372, 388, 397, 642
Psp124BI	GAGCTC	2 cut(s)	119, 228
PsrI	GAACNNNNNNTAC	2 cut(s)	789, 821
PsuI	RGATCY	1 cut(s)	810
PvuII	CAGCTG	1 cut(s)	204
RsaI	GTAC	3 cut(s)	591, 798, 835
RsaNI	GTAC	3 cut(s)	590, 797, 834
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	2 cut(s)	119, 228
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	5 cut(s)	202, 371, 387, 396, 641
Sau3AI	GATC	3 cut(s)	292, 810, 823
ScrFI	CCNGG	1 cut(s)	715
SduI	GDGCHC	4 cut(s)	101, 119, 228, 859
SfaNI	GCATC	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	443, 829
SmoI	CTYRAG	2 cut(s)	443, 829
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	7 cut(s)	57, 159, 284, 410, 475, 491, 577
SsiI	CCGC	6 cut(s)	26, 387, 640, 691, 697, 785
SstI	GAGCTC	2 cut(s)	119, 228
StyD4I	CCNGG	1 cut(s)	713
StyI	CCWWGG	2 cut(s)	342, 850
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	2 cut(s)	138, 341
TaqI	TCGA	3 cut(s)	327, 366, 778
TasI	AATT	7 cut(s)	57, 159, 284, 410, 475, 491, 577
TauI	GCSGC	2 cut(s)	389, 643
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	678
TseI	GCWGC	3 cut(s)	201, 370, 395
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	1 cut(s)	779
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	348
VneI	GTGCAC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	284, 475
XceI	RCATGY	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.