Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Forward (+)

33544916 .. 33547672

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G365500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACAACGAGGTGGAAAGAGGAAAAGGCCGAAAGTCCCCAAACTCTGAAGTCAAATGCATTCTCATTTCAAAGTCCCAAGCAAAACAAAATGAGCCCTCTCCCAGTTCCGGAGGATGTTGCCCTCCAAATTGCTTCGTTCCTGCAGGTGCCGGACCTTTGTTCGTTGGCCAGTTGTTCCCGGTTATGGAGGGAGCTGTGTGGGTCGGATTGCATATGGGAGTCTCTGGTACGAGACAGATGGCCCTCTCTTGAATTGTCCGATGGGTCTTCTTCTTCCTCTGCAATAAAAAAACCCATGTCCATGGGATGGAGGTGCTTTTACATGGAGTTGCACAATGAGAAGGCGGCTCGTGCTACCTCGGTGGTTCAGTTTGTGGAAACATGCTCATCATCTGTATCCCTTGAGGTTGGGGAGTATCAGAAGGCAATGCAAGATTTGCACGCACTGCAATTTGGATATCAGGATGTACAAATGTTTCTTTTCAAACCAGAGCTTACTGTGCTGGTTAACCTACTTGGTTTGCACTACTGCATTAATTGGCTTGGAGTGCCGGCCAACTGTGTCCTGAAAGCACTCGAGAGTAGGAAGATATCTGAGCGGCAAGTTTGTGTTAAATGGTGGAAGCTTGGGATATGGTCCCACGGCTTCAGAATGCGGGATGAATTACTTTCTCGTCGGTTCACTCTGATAGATGTTGGTTTGGCCAAACAAGAGGAGGTTCTTGCGGTGCTTTATCGAGGTGCCATTCATGAGGTCTTACGAGTTCAGATCTGTGTTGCTGATCCCTCAAGCCCATCTTGGTCGTGCCAAAGCGCACACAGAAGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

278

Amino Acids

31.49

Weight (kDa)

8.27

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	2 cut(s)	148, 743
AccB7I	CCANNNNNTGG	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	601
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	4 cut(s)	347, 601, 658, 728
AclWI	GGATC	1 cut(s)	779
AcoI	YGGCCR	3 cut(s)	168, 555, 705
AcuI	CTGAAG	2 cut(s)	68, 634
AfaI	GTAC	2 cut(s)	231, 471
AfiI	CCNNNNNNNGG	3 cut(s)	109, 186, 309
AgsI	TTSAA	3 cut(s)	71, 254, 487
AluBI	AGCT	3 cut(s)	196, 496, 628
AluI	AGCT	3 cut(s)	196, 496, 628
Alw26I	GTCTC	2 cut(s)	228, 228
AlwI	GGATC	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	5 cut(s)	27, 168, 242, 555, 705
AseI	ATTAAT	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	818
AspS9I	GGNCC	3 cut(s)	154, 243, 639
AsuC2I	CCSGG	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	2 cut(s)	154, 639
BalI	TGGCCA	2 cut(s)	170, 707
BanI	GGYRCC	2 cut(s)	148, 743
BanII	GRGCYC	1 cut(s)	98
BauI	CACGAG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	261
BccI	CCATC	4 cut(s)	234, 257, 303, 805
BceAI	ACGGC	1 cut(s)	661
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	228, 228
BfmI	CTRYAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	409
BglII	AGATCT	1 cut(s)	771
BisI	GCNGC	2 cut(s)	348, 602
BlsI	GCNGC	2 cut(s)	349, 603
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	2 cut(s)	154, 639
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	3 cut(s)	154, 243, 639
BmiI	GGNNCC	3 cut(s)	150, 641, 745
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	425, 775
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	303, 360, 643
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 186, 309
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	104, 171
Bse3DI	GCAATG	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	109
BseDI	CCNNGG	3 cut(s)	303, 360, 643
BseGI	GGATG	4 cut(s)	121, 314, 472, 667
BseLI	CCNNNNNNNGG	3 cut(s)	109, 186, 309
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	104, 171
BseRI	GAGGAG	1 cut(s)	731
BshFI	GGCC	5 cut(s)	29, 170, 244, 557, 707
BshNI	GGYRCC	2 cut(s)	148, 743
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	4 cut(s)	110, 152, 181, 554
BslFI	GGGAC	3 cut(s)	21, 60, 625
BslI	CCNNNNNNNGG	3 cut(s)	109, 186, 309
BsmAI	GTCTC	2 cut(s)	228, 228
BsmFI	GGGAC	3 cut(s)	21, 60, 625
BsmI	GAATGC	2 cut(s)	59, 660
BsnI	GGCC	5 cut(s)	29, 170, 244, 557, 707
BsoBI	CYCGRG	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp13I	TCCGGA	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	771, 784
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	4 cut(s)	347, 601, 658, 728
BspANI	GGCC	5 cut(s)	29, 170, 244, 557, 707
BspCNI	CTCAG	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	3 cut(s)	150, 641, 745
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	779
BspT107I	GGYRCC	2 cut(s)	148, 743
BsrBI	CCGCTC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	104, 171
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	3 cut(s)	303, 360, 643
BssMI	GATC	2 cut(s)	771, 784
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	502, 563
BstAPI	GCANNNNNTGC	2 cut(s)	439, 448
BstAUI	TGTACA	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	444, 555
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	2 cut(s)	303, 643
BstF5I	GGATG	4 cut(s)	121, 314, 472, 667
BstHHI	GCGC	1 cut(s)	818
BstKTI	GATC	2 cut(s)	774, 787
BstMAI	GTCTC	2 cut(s)	228, 228
BstMBI	GATC	2 cut(s)	771, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	353, 439, 448, 502, 550
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	143
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	771
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	5 cut(s)	29, 170, 244, 557, 707
BtgI	CCRYGG	2 cut(s)	303, 643
BtsCI	GGATG	4 cut(s)	121, 314, 472, 667
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	446
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	444, 555
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	818
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	3 cut(s)	154, 243, 639
Csp6I	GTAC	2 cut(s)	230, 470
CviAII	CATG	5 cut(s)	298, 304, 325, 384, 752
CviQI	GTAC	2 cut(s)	230, 470
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	2 cut(s)	773, 786
DpnII	GATC	2 cut(s)	771, 784
EaeI	YGGCCR	3 cut(s)	168, 555, 705
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	98
Eco32I	GATATC	2 cut(s)	461, 594
Eco47I	GGWCC	2 cut(s)	154, 639
Eco57I	CTGAAG	2 cut(s)	68, 634
Eco88I	CYCGRG	1 cut(s)	578
EcoRV	GATATC	2 cut(s)	461, 594
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	5 cut(s)	301, 307, 328, 387, 755
FaiI	YATR	9 cut(s)	187, 215, 217, 299, 305, 326, 385, 637, 753
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FaqI	GGGAC	3 cut(s)	21, 60, 625
FatI	CATG	5 cut(s)	297, 303, 324, 383, 751
FauI	CCCGC	1 cut(s)	651
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	348, 602
FokI	GGATG	4 cut(s)	128, 321, 479, 674
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	348, 602
GlaI	GCGC	1 cut(s)	817
GluI	GCNGC	2 cut(s)	348, 602
HaeIII	GGCC	5 cut(s)	29, 170, 244, 557, 707
HapII	CCGG	4 cut(s)	110, 152, 181, 554
HhaI	GCGC	1 cut(s)	818
Hin1II	CATG	5 cut(s)	301, 307, 328, 387, 755
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	1 cut(s)	221
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	4 cut(s)	110, 152, 181, 554
Hpy166II	GTNNAC	2 cut(s)	511, 684
Hpy188I	TCNGA	8 cut(s)	48, 208, 262, 423, 598, 653, 690, 771
Hpy188III	TCNNGA	6 cut(s)	110, 251, 464, 568, 580, 752
Hpy8I	GTNNAC	2 cut(s)	511, 684
Hpy99I	CGWCG	1 cut(s)	681
HpyAV	CCTTC	3 cut(s)	337, 418, 819
HpyCH4III	ACNGT	2 cut(s)	502, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	353, 439, 448, 502, 550
HpyF3I	CTNAG	1 cut(s)	597
Hsp92II	CATG	5 cut(s)	301, 307, 328, 387, 755
HspAI	GCGC	1 cut(s)	816
Kpn2I	TCCGGA	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	553
KroNI	GCCGGC	1 cut(s)	555
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	771, 784
LmnI	GCTCC	1 cut(s)	193
MalI	GATC	2 cut(s)	773, 786
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	2 cut(s)	771, 784
MboII	GAAGA	4 cut(s)	261, 264, 267, 601
MflI	RGATCY	1 cut(s)	771
MhlI	GDGCHC	1 cut(s)	98
MlsI	TGGCCA	2 cut(s)	170, 707
MluCI	AATT	5 cut(s)	129, 254, 452, 538, 665
MluNI	TGGCCA	2 cut(s)	170, 707
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	186
Mox20I	TGGCCA	2 cut(s)	170, 707
Mph1103I	ATGCAT	1 cut(s)	61
MroI	TCCGGA	1 cut(s)	109
MroNI	GCCGGC	1 cut(s)	553
MscI	TGGCCA	2 cut(s)	170, 707
MseI	TTAA	3 cut(s)	510, 537, 615
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	2 cut(s)	170, 707
MspI	CCGG	4 cut(s)	110, 152, 181, 554
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	2 cut(s)	59, 660
MwoI	GCNNNNNNNGC	5 cut(s)	353, 439, 448, 502, 550
NaeI	GCCGGC	1 cut(s)	555
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	2 cut(s)	771, 784
NgoMIV	GCCGGC	1 cut(s)	553
NlaIII	CATG	5 cut(s)	301, 307, 328, 387, 755
NlaIV	GGNNCC	3 cut(s)	150, 641, 745
NsiI	ATGCAT	1 cut(s)	61
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	578
PagI	TCATGA	1 cut(s)	751
PaqCI	CACCTGC	1 cut(s)	136
PctI	GAATGC	2 cut(s)	59, 660
PdiI	GCCGGC	1 cut(s)	555
PflMI	CCANNNNNTGG	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	349, 603
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	537
PspN4I	GGNNCC	3 cut(s)	150, 641, 745
PspPI	GGNCC	3 cut(s)	154, 243, 639
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	771
RsaI	GTAC	2 cut(s)	231, 471
RsaNI	GTAC	2 cut(s)	230, 470
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	510, 537, 615
SatI	GCNGC	2 cut(s)	348, 602
Sau3AI	GATC	2 cut(s)	771, 784
Sau96I	GGNCC	3 cut(s)	154, 243, 639
SbfI	CCTGCAGG	1 cut(s)	147
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	181
SdaI	CCTGCAGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	143
Sfr274I	CTCGAG	1 cut(s)	578
SinI	GGWCC	2 cut(s)	154, 639
SlaI	CTCGAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	3 cut(s)	404, 578, 790
SmoI	CTYRAG	3 cut(s)	404, 578, 790
Sse8387I	CCTGCAGG	1 cut(s)	147
Sse9I	AATT	5 cut(s)	129, 254, 452, 538, 665
SsiI	CCGC	4 cut(s)	347, 601, 658, 728
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	502, 563
TaqI	TCGA	2 cut(s)	579, 739
TasI	AATT	5 cut(s)	129, 254, 452, 538, 665
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	2 cut(s)	350, 604
Tru1I	TTAA	3 cut(s)	510, 537, 615
Tru9I	TTAA	3 cut(s)	510, 537, 615
TscAI	CASTG	1 cut(s)	453
TspDTI	ATGAA	2 cut(s)	678, 740
TspRI	CASTG	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	154, 639
VspI	ATTAAT	1 cut(s)	537
XceI	RCATGY	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.