Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Reverse (-)

8760468 .. 8760773

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1114900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGCTTTTACATCGAGCTGCACAACGAGAAGGCCGCGATTGCTGCCTTATTGGTTCAATTTATGAAGAAATGCTCGTCGTCTGAATCCCTTGAGGTCGAAGAGTATCAGAAGGCGATGCGAAATTTGAACCAACTGCAATTCGGATATCAGGATGTGGAAATGTTTCTTTTCAAACCAAAGCTTACCGTGCTTGTTAACCTACGTGGTTTGCACTACTGCGTGAATTGGCTGGGAGTACCGAAACCCAAGATCCGAACCCTTGTCACCATCATCCACCAGTTGAAACAGCCACGAAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

102

Amino Acids

11.91

Weight (kDa)

9.7

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	4 cut(s)	59, 130, 175, 286
AluBI	AGCT	3 cut(s)	6, 19, 184
AluI	AGCT	3 cut(s)	6, 19, 184
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	19, 44
ApoI	RAATTY	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	6, 31
BccI	CCATC	1 cut(s)	278
BisI	GCNGC	3 cut(s)	20, 36, 45
BlsI	GCNGC	3 cut(s)	21, 37, 46
BmsI	GCATC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	160, 273
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	6, 31
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	160, 273
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 44, 190
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	6, 31
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	160, 273
Csp6I	GTAC	1 cut(s)	239
CviJI	RGCY	6 cut(s)	6, 19, 35, 184, 232, 292
CviKI_1	RGCY	6 cut(s)	6, 19, 35, 184, 232, 292
CviQI	GTAC	1 cut(s)	239
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	149
FaiI	YATR	1 cut(s)	65
Fnu4HI	GCNGC	3 cut(s)	20, 36, 45
FokI	GGATG	2 cut(s)	167, 260
Fsp4HI	GCNGC	3 cut(s)	20, 36, 45
GluI	GCNGC	3 cut(s)	20, 36, 45
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	86
HpaI	GTTAAC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	85, 111, 146, 257
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	25, 106
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	22, 139, 214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 44, 190
HpySE526I	ACGT	1 cut(s)	205
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	252
LpnPI	CCDG	3 cut(s)	137, 218, 293
Lsp1109I	GCAGC	2 cut(s)	6, 31
LweI	GCATC	1 cut(s)	108
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	2 cut(s)	79, 113
MflI	RGATCY	1 cut(s)	252
MluCI	AATT	4 cut(s)	59, 124, 140, 226
MnlI	CCTC	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	198
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	41, 44, 190
NdeII	GATC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	21, 37, 46
Ppu21I	YACGTR	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	252
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	20, 36, 45
Sau3AI	GATC	1 cut(s)	252
SetI	ASST	6 cut(s)	8, 21, 99, 186, 204, 208
SfaNI	GCATC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	4 cut(s)	59, 124, 140, 226
SsiI	CCGC	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	15, 99
TasI	AATT	4 cut(s)	59, 124, 140, 226
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	19, 44
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	80
XapI	RAATTY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.