Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Forward (+)

7033997 .. 7035467

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCCCAACGTCAGCAGCACCCATCATTTATGCGAATTGACAAACAAGAGAGGCAGCAACAACCCAAAGACCAAAGCTTTCAGGCACAAGACGTATGTAAGCAGCAGAAAATGGGTTCTTTTCCAGTCCCGGACGAGATTGCCCTCAGAATTGCTTCGTTACTTGAGGTGTGGGATTTGTGTGCGTTGGCTTGTTGTTGTAGGTGTTGGAAGGAGCTTTGTGGGTCTGATTGCCTATGGGAGTCTCTAGCAAAAAAGAGATGGGCTTCTCTGGAATTCTCAGACGAGTCTGAGTCTGAGTCTTCATCTTCCACTGCAACCAGAAGGCCGAAGGACAAGGGGTGGAGGCCCTTTTACGAGGAGGTTCACGATCATAAGGCTGCTAGTGCTGCTTTGGTGGTCGATTATGTGGAGAAATGCTCAATATATGGATCTCTTGAGGTTGCACAATATCAAAGGGCAATCGAAGACCTGCACGCGATGAGATTTGGATATGAGGATGTAGTATTGCTCCTTTTGAAGCCAAGTCTTAGTGTGCAGATCAACCTCCTCGGTTTGCATTACTGCATGAATTGGCTTAAAGTGCCGGTCAAATGTGTTGTGAAAGAACTAAGAATTAGGAAGTTAGCGGAGCGGCGAGTTTGTGTTAAATGGTGGACGCTTGGCAAATGGTCCAACGGTTACGGTATTCGCATGAATGACGAACTACATTCTCATCAATTCACATTGTTAGATGTTGCACTTGCAAGAGCAGAGGAGGTTCTTGCAGTGCTGTATCGAGGTGCTATTCATGAGGTACTACGTGTTCAGATTACGGTGGCAAAGCCAAGTACACCTTCATCTTCCCTACCTATATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

287

Amino Acids

32.89

Weight (kDa)

8.21

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	44 - 83	2.5e-09	F-box-like
F-box	PF00646	44 - 81	5.3e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	634
AccII	CGCG	1 cut(s)	479
AciI	CCGC	2 cut(s)	629, 634
AclWI	GGATC	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	2 cut(s)	798, 832
AflIII	ACRYGT	1 cut(s)	802
AgsI	TTSAA	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	820, 852
AluBI	AGCT	2 cut(s)	78, 217
AluI	AGCT	2 cut(s)	78, 217
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	439
AoxI	GGCC	2 cut(s)	326, 347
ApeKI	GCWGC	5 cut(s)	16, 55, 103, 380, 389
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	348, 672
AsuC2I	CCSGG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	672
BbsI	GAAGAC	2 cut(s)	294, 474
BbvI	GCAGC	5 cut(s)	28, 67, 115, 367, 376
BccI	CCATC	2 cut(s)	31, 255
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	2 cut(s)	248, 384
BfuAI	ACCTGC	1 cut(s)	480
BisI	GCNGC	6 cut(s)	17, 56, 104, 381, 390, 635
BlsI	GCNGC	6 cut(s)	18, 57, 105, 382, 391, 636
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	672
BmgT120I	GGNCC	2 cut(s)	348, 672
BmrFI	CCNGG	1 cut(s)	131
BpiI	GAAGAC	2 cut(s)	294, 474
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpuEI	CTTGAG	2 cut(s)	185, 458
BpuMI	CCSGG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	803
BsaJI	CCNNGG	1 cut(s)	550
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	1 cut(s)	505
BseMII	CTCAG	4 cut(s)	160, 282, 288, 294
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	3 cut(s)	374, 539, 770
BseXI	GCAGC	5 cut(s)	28, 67, 115, 367, 376
BsgI	GTGCAG	2 cut(s)	458, 557
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	328, 349
BsiSI	CCGG	2 cut(s)	131, 587
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	328, 349
Bsp143I	GATC	3 cut(s)	370, 431, 540
BspACI	CCGC	2 cut(s)	629, 634
BspANI	GGCC	2 cut(s)	328, 349
BspCNI	CTCAG	4 cut(s)	159, 283, 289, 293
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	790
BspMI	ACCTGC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	439
BsrBI	CCGCTC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	3 cut(s)	370, 431, 540
Bst4CI	ACNGT	3 cut(s)	680, 686, 817
BstBAI	YACGTR	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	6 cut(s)	146, 280, 291, 297, 530, 611
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	3 cut(s)	373, 434, 543
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	370, 431, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 389, 583
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	5 cut(s)	28, 67, 115, 367, 376
BstV2I	GAAGAC	2 cut(s)	294, 474
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	328, 349
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	2 cut(s)	312, 774
BtsIMutI	CAGTG	2 cut(s)	312, 774
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	477
CciI	TCATGA	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	348, 672
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	797, 831
CviAII	CATG	3 cut(s)	568, 694, 791
CviQI	GTAC	2 cut(s)	797, 831
DdeI	CTNAG	6 cut(s)	146, 280, 291, 297, 530, 611
DpnI	GATC	3 cut(s)	372, 433, 542
DpnII	GATC	3 cut(s)	370, 431, 540
Eco47I	GGWCC	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	275
FaeI	CATG	3 cut(s)	571, 697, 794
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	567, 693, 790
Fnu4HI	GCNGC	6 cut(s)	17, 56, 104, 381, 390, 635
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	6 cut(s)	17, 56, 104, 381, 390, 635
FspBI	CTAG	2 cut(s)	248, 384
GluI	GCNGC	6 cut(s)	17, 56, 104, 381, 390, 635
HaeIII	GGCC	2 cut(s)	328, 349
HapII	CCGG	2 cut(s)	131, 587
HgaI	GACGC	1 cut(s)	667
Hin1II	CATG	3 cut(s)	571, 697, 794
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	4 cut(s)	242, 287, 293, 299
HpaII	CCGG	2 cut(s)	131, 587
Hpy166II	GTNNAC	3 cut(s)	367, 657, 833
Hpy188I	TCNGA	7 cut(s)	149, 229, 283, 292, 298, 810, 860
Hpy188III	TCNNGA	4 cut(s)	272, 368, 437, 791
Hpy8I	GTNNAC	3 cut(s)	367, 657, 833
HpyAV	CCTTC	4 cut(s)	205, 318, 325, 846
HpyCH4III	ACNGT	3 cut(s)	680, 686, 817
HpyCH4IV	ACGT	3 cut(s)	10, 93, 802
HpyCH4V	TGCA	9 cut(s)	317, 446, 475, 538, 559, 567, 740, 746, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 389, 583
HpyF3I	CTNAG	6 cut(s)	146, 280, 291, 297, 530, 611
HpySE526I	ACGT	3 cut(s)	10, 93, 802
Hsp92II	CATG	3 cut(s)	571, 697, 794
Kzo9I	GATC	3 cut(s)	370, 431, 540
LmnI	GCTCC	3 cut(s)	214, 516, 631
LpnPI	CCDG	7 cut(s)	68, 138, 144, 257, 334, 485, 600
Lsp1109I	GCAGC	5 cut(s)	28, 67, 115, 367, 376
MaeI	CTAG	2 cut(s)	248, 384
MaeII	ACGT	3 cut(s)	10, 93, 802
MaeIII	GTNAC	2 cut(s)	159, 680
MalI	GATC	3 cut(s)	372, 433, 542
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	3 cut(s)	370, 431, 540
MboII	GAAGA	4 cut(s)	294, 300, 479, 834
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	6 cut(s)	36, 150, 275, 571, 615, 719
MlyI	GAGTC	4 cut(s)	251, 296, 302, 308
MmeI	TCCRAC	2 cut(s)	188, 699
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	2 cut(s)	579, 648
MspI	CCGG	2 cut(s)	131, 587
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	386, 389, 583
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	370, 431, 540
NlaIII	CATG	3 cut(s)	571, 697, 794
PagI	TCATGA	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	154
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	6 cut(s)	18, 57, 105, 382, 391, 636
PleI	GAGTC	4 cut(s)	250, 295, 301, 307
PpsI	GAGTC	4 cut(s)	250, 295, 301, 307
Ppu21I	YACGTR	1 cut(s)	803
PspPI	GGNCC	2 cut(s)	348, 672
PsrI	GAACNNNNNNTAC	2 cut(s)	789, 821
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	2 cut(s)	798, 832
RsaNI	GTAC	2 cut(s)	797, 831
SaqAI	TTAA	2 cut(s)	579, 648
SatI	GCNGC	6 cut(s)	17, 56, 104, 381, 390, 635
Sau3AI	GATC	3 cut(s)	370, 431, 540
Sau96I	GGNCC	2 cut(s)	348, 672
SchI	GAGTC	4 cut(s)	251, 296, 302, 308
ScrFI	CCNGG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	164, 437
SmoI	CTYRAG	2 cut(s)	164, 437
Sse9I	AATT	6 cut(s)	36, 150, 275, 571, 615, 719
SsiI	CCGC	2 cut(s)	629, 634
SspMI	CTAG	2 cut(s)	248, 384
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	680, 686, 817
TaiI	ACGT	3 cut(s)	13, 96, 805
TaqI	TCGA	3 cut(s)	402, 465, 778
TasI	AATT	6 cut(s)	36, 150, 275, 571, 615, 719
TatI	WGTACW	1 cut(s)	830
TauI	GCSGC	1 cut(s)	637
Tru1I	TTAA	2 cut(s)	579, 648
Tru9I	TTAA	2 cut(s)	579, 648
TscAI	CASTG	2 cut(s)	319, 774
TseI	GCWGC	5 cut(s)	16, 55, 103, 380, 389
TspDTI	ATGAA	5 cut(s)	294, 584, 710, 779, 828
TspRI	CASTG	2 cut(s)	319, 774
VpaK11BI	GGWCC	1 cut(s)	672
XapI	RAATTY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	2 cut(s)	248, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.