Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Forward (+)

7069238 .. 7071271

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCAATGTCAAAGAGCTCAACCCCCATGTCAATGTCAAAGAGGTCCAAACCGGAGAAGACCCACATGCCCCAACGTCAGCAGCACCCATCATTTATGCGAATTGACAAACAAGAGAGGCAGCAACAACCCAAAGACAAAAGCTTTCAGGGACAAGACGTATGTAAGGAGCAGAAAATGGATTCTTTTCCAGTCCCGGACGAGATTGCCCTCAGAATTGCTTCGTTACTTGAGGTGTGGGATTTGTGTGCGTTGGCTTGTTGTTGTAGGTGTTGGAAGGAGCTTTGTGGGTCTGATTGCCTATGGGAGTCTCTAGCAAAAAAGAGATGGGCTTCTCTGGAATTCTCAGACGAGTCTGAGTCTGAGTCTTCATCTTCCACTGCAATCAGAAGGCCGAAGGACAAGGGGTGGAGGCCCTTTTACGAGGAGGTTCATGATCATAAGGCTGCTAGTGCTGCTTTGGTGATCGATTATGTGGAGAAATGCTCAATATATGGATCTCTTGAGGTTGCACAATATCTAAGGGCAATGGAAGACCTGCACGCGATGAGATTTGGATATGAGGATGTAGTATTGCTCCTTTTGAAGCCAAGTCTAAGTGTGCAGATCAACCTGCTCGGTTTGCATTACTGCATGAATTGGCTTAAAGTGCCGGTCAAATGTGTTGTGAAAGAACTAAGAATTAGGAAGTTAGCGGAGCGGCGAGTTTGTGTTAAATGGTGGACGCTTGGCAAATGGTCCAACGGTTACGGTATTCGCATGAATGACGAACTACATTCTCATCAATTCACATTGTTAGATGTTGCACTTGCAAGAGCAGAGGAGGTTCTTGCAGTGCTGTATCGAGGTGCTATTCATGAGGTACTGCGTGTTCAGATTACGGTGGCAAAGCCCTCAAGTACACCTTCATCTTCCCTACGTATATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

309

Amino Acids

35.57

Weight (kDa)

8.75

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	66 - 105	2.8e-09	F-box-like
F-box	PF00646	66 - 103	6e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	546, 621
AccBSI	CCGCTC	1 cut(s)	700
AccII	CGCG	1 cut(s)	545
AciI	CCGC	2 cut(s)	695, 700
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	2 cut(s)	864, 901
AgsI	TTSAA	1 cut(s)	586
AluBI	AGCT	3 cut(s)	18, 144, 283
AluI	AGCT	3 cut(s)	18, 144, 283
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	2 cut(s)	392, 413
ApeKI	GCWGC	4 cut(s)	82, 121, 446, 455
ApoI	RAATTY	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	45, 414, 738
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	45, 738
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	3 cut(s)	65, 360, 540
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	94, 133, 433, 442
BccI	CCATC	2 cut(s)	97, 321
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	314, 450
BfuAI	ACCTGC	2 cut(s)	546, 621
BisI	GCNGC	5 cut(s)	83, 122, 447, 456, 701
BlsI	GCNGC	5 cut(s)	84, 123, 448, 457, 702
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	45, 738
BmgT120I	GGNCC	3 cut(s)	45, 414, 738
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	3 cut(s)	65, 360, 540
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpuEI	CTTGAG	3 cut(s)	251, 524, 880
BpuMI	CCSGG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	920
BsaWI	WCCGGW	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	534
BseCI	ATCGAT	1 cut(s)	468
BseGI	GGATG	1 cut(s)	571
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	4 cut(s)	226, 348, 354, 360
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	440, 836
BseXI	GCAGC	4 cut(s)	94, 133, 433, 442
BsgI	GTGCAG	2 cut(s)	524, 623
Bsh1236I	CGCG	1 cut(s)	545
BshFI	GGCC	2 cut(s)	394, 415
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	3 cut(s)	53, 197, 653
BslFI	GGGAC	2 cut(s)	165, 179
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	165, 179
BsnI	GGCC	2 cut(s)	394, 415
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	436, 465, 497, 606
BspACI	CCGC	2 cut(s)	695, 700
BspANI	GGCC	2 cut(s)	394, 415
BspCNI	CTCAG	4 cut(s)	225, 349, 355, 359
BspDI	ATCGAT	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	545
BspHI	TCATGA	2 cut(s)	433, 856
BspMI	ACCTGC	2 cut(s)	546, 621
BspPI	GGATC	1 cut(s)	505
BsrBI	CCGCTC	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	652
BssMI	GATC	4 cut(s)	436, 465, 497, 606
Bst4CI	ACNGT	3 cut(s)	746, 752, 883
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	7 cut(s)	212, 346, 357, 363, 521, 596, 677
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	1 cut(s)	545
BstKTI	GATC	4 cut(s)	439, 468, 500, 609
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	436, 465, 497, 606
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 455, 622, 649
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	195
BstSNI	TACGTA	1 cut(s)	920
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	4 cut(s)	94, 133, 433, 442
BstV2I	GAAGAC	3 cut(s)	65, 360, 540
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	394, 415
BsuTUI	ATCGAT	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	2 cut(s)	378, 840
BtsIMutI	CAGTG	2 cut(s)	378, 840
BveI	ACCTGC	2 cut(s)	546, 621
Cac8I	GCNNGC	1 cut(s)	543
CciI	TCATGA	2 cut(s)	433, 856
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	45, 414, 738
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	863, 900
CviAII	CATG	6 cut(s)	28, 67, 434, 634, 760, 857
CviQI	GTAC	2 cut(s)	863, 900
DdeI	CTNAG	7 cut(s)	212, 346, 357, 363, 521, 596, 677
DpnI	GATC	4 cut(s)	438, 467, 499, 608
DpnII	GATC	4 cut(s)	436, 465, 497, 606
Ecl136II	GAGCTC	1 cut(s)	18
Eco105I	TACGTA	1 cut(s)	920
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	45, 738
Eco53kI	GAGCTC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	6 cut(s)	31, 70, 437, 637, 763, 860
FalI	AAGNNNNNCTT	2 cut(s)	889, 921
FaqI	GGGAC	2 cut(s)	165, 179
FatI	CATG	6 cut(s)	27, 66, 433, 633, 759, 856
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	5 cut(s)	83, 122, 447, 456, 701
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	83, 122, 447, 456, 701
FspBI	CTAG	2 cut(s)	314, 450
GluI	GCNGC	5 cut(s)	83, 122, 447, 456, 701
HaeIII	GGCC	2 cut(s)	394, 415
HapII	CCGG	3 cut(s)	53, 197, 653
HgaI	GACGC	1 cut(s)	733
Hin1II	CATG	6 cut(s)	31, 70, 437, 637, 763, 860
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	5 cut(s)	182, 308, 353, 359, 365
HpaII	CCGG	3 cut(s)	53, 197, 653
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	2 cut(s)	723, 902
Hpy188I	TCNGA	8 cut(s)	215, 295, 349, 358, 364, 389, 876, 929
Hpy188III	TCNNGA	4 cut(s)	338, 434, 503, 857
Hpy8I	GTNNAC	2 cut(s)	723, 902
HpyAV	CCTTC	4 cut(s)	271, 384, 391, 915
HpyCH4III	ACNGT	3 cut(s)	746, 752, 883
HpyCH4IV	ACGT	3 cut(s)	76, 159, 919
HpyCH4V	TGCA	9 cut(s)	383, 512, 541, 604, 625, 633, 806, 812, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 455, 622, 649
HpyF3I	CTNAG	7 cut(s)	212, 346, 357, 363, 521, 596, 677
HpySE526I	ACGT	3 cut(s)	76, 159, 919
Hsp92II	CATG	6 cut(s)	31, 70, 437, 637, 763, 860
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	436, 465, 497, 606
LmnI	GCTCC	4 cut(s)	169, 280, 582, 697
LpnPI	CCDG	8 cut(s)	66, 134, 204, 210, 323, 551, 626, 666
Lsp1109I	GCAGC	4 cut(s)	94, 133, 433, 442
MaeI	CTAG	2 cut(s)	314, 450
MaeII	ACGT	3 cut(s)	76, 159, 919
MaeIII	GTNAC	2 cut(s)	225, 746
MalI	GATC	4 cut(s)	438, 467, 499, 608
MbiI	CCGCTC	1 cut(s)	700
MboI	GATC	4 cut(s)	436, 465, 497, 606
MboII	GAAGA	5 cut(s)	70, 360, 366, 545, 903
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	6 cut(s)	102, 216, 341, 637, 681, 785
MlyI	GAGTC	4 cut(s)	317, 362, 368, 374
MmeI	TCCRAC	2 cut(s)	254, 765
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	2 cut(s)	645, 714
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	3 cut(s)	53, 197, 653
MspR9I	CCNGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	545
MwoI	GCNNNNNNNGC	4 cut(s)	452, 455, 622, 649
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	4 cut(s)	436, 465, 497, 606
NlaIII	CATG	6 cut(s)	31, 70, 437, 637, 763, 860
NspI	RCATGY	1 cut(s)	70
PagI	TCATGA	2 cut(s)	433, 856
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	5 cut(s)	84, 123, 448, 457, 702
PleI	GAGTC	4 cut(s)	316, 361, 367, 373
PpsI	GAGTC	4 cut(s)	316, 361, 367, 373
Ppu21I	YACGTR	1 cut(s)	920
Psp124BI	GAGCTC	1 cut(s)	20
PspPI	GGNCC	3 cut(s)	45, 414, 738
PsrI	GAACNNNNNNTAC	2 cut(s)	855, 887
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	2 cut(s)	864, 901
RsaNI	GTAC	2 cut(s)	863, 900
RseI	CAYNNNNRTG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	645, 714
SatI	GCNGC	5 cut(s)	83, 122, 447, 456, 701
Sau3AI	GATC	4 cut(s)	436, 465, 497, 606
Sau96I	GGNCC	3 cut(s)	45, 414, 738
SchI	GAGTC	4 cut(s)	317, 362, 368, 374
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	20
SinI	GGWCC	2 cut(s)	45, 738
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	230, 503, 895
SmoI	CTYRAG	3 cut(s)	230, 503, 895
SnaBI	TACGTA	1 cut(s)	920
Sse9I	AATT	6 cut(s)	102, 216, 341, 637, 681, 785
SsiI	CCGC	2 cut(s)	695, 700
SspMI	CTAG	2 cut(s)	314, 450
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	746, 752, 883
TaiI	ACGT	3 cut(s)	79, 162, 922
TaqI	TCGA	2 cut(s)	468, 844
TasI	AATT	6 cut(s)	102, 216, 341, 637, 681, 785
TatI	WGTACW	1 cut(s)	899
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	645, 714
Tru9I	TTAA	2 cut(s)	645, 714
TscAI	CASTG	2 cut(s)	385, 840
TseI	GCWGC	4 cut(s)	82, 121, 446, 455
TspDTI	ATGAA	6 cut(s)	360, 422, 650, 776, 845, 897
TspRI	CASTG	2 cut(s)	385, 840
VpaK11BI	GGWCC	2 cut(s)	45, 738
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	2 cut(s)	314, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.