Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Reverse (-)

62198272 .. 62200558

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG443300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCAATGTCAAAGAGGTCCGAACCGGAGAAGACCCACATGCCCCAACGTCAGCAGCACCCATCATTTATGCGAATTGACAAACAAGAGAGGCAGCAACAACCCAAAGACCAAGACGTATGTAAGCAGCAGAAAATGGGTTCTTTTCCAGTCCCGGACGAGATTGCCCTCAGAATTGCTTCGTTACTTGAGGTACGATCCTTGATGGTTTCAATTTCTTTTGGTTCTTTATATTTTCCGCACTTGTTGATGTTTTTGTGCTCTGTTTTGGAAACAAAGGTGTGGGATTTGTGTGCGTTGGCTTGTTGTTGTAGGTGTTGGAAGGAGCTTTGTGGGTCTGATTGCCTATGGGAGTCTCTAGCAAAAAAGAGATGGGCTTCTCTGGAATTCTCAGACGAGTCTGAGTCTGAGTCTTCATCTTCCACTGCAATCAGAAGGCCGAAGGACAAGGGGTGGAGGCCCTTTTACGAGGAGGTTCACGATCATAAGGCTGCTAGTGCTGCTTTGGTGATCGATTATGTGGAGAAATGCTCAATATATGGATCTCTTGAGGTTGCACAATATCAAAGGGCGATTGAAGACCTGCACGTGATGAGATTTGGATATGAGGATGTAGTATTGCTCCTTTTGAAGCCCAGTCTTAGTGTGCAGATCAATCTACTCGGTTTGCATTACTGCATGAATTGGCTTAAAGTGCCGGTGTGTGGTTTTTCCCTCTGTGTCTACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

243

Amino Acids

28.02

Weight (kDa)

6.65

Isoelectric Point (pI)

66.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	2 cut(s)	192, 550
AcsI	RAATTY	1 cut(s)	386
AcvI	CACGTG	1 cut(s)	589
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	3 cut(s)	213, 578, 631
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	192, 550
AoxI	GGCC	2 cut(s)	437, 458
ApeKI	GCWGC	5 cut(s)	55, 94, 127, 491, 500
ApoI	RAATTY	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	18, 459
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	18
BbrPI	CACGTG	1 cut(s)	589
BbsI	GAAGAC	3 cut(s)	38, 405, 585
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	5 cut(s)	67, 106, 139, 478, 487
BccI	CCATC	3 cut(s)	70, 199, 366
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	359, 495
BfuAI	ACCTGC	1 cut(s)	591
BisI	GCNGC	5 cut(s)	56, 95, 128, 492, 501
BlsI	GCNGC	5 cut(s)	57, 96, 129, 493, 502
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	18, 459
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	3 cut(s)	38, 405, 585
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpuEI	CTTGAG	2 cut(s)	209, 569
BpuMI	CCSGG	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	513
BsaAI	YACGTR	1 cut(s)	589
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	149, 636
BseCI	ATCGAT	1 cut(s)	513
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMII	CTCAG	4 cut(s)	184, 393, 399, 405
BseNI	ACTGG	2 cut(s)	149, 636
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	5 cut(s)	67, 106, 139, 478, 487
BsgI	GTGCAG	2 cut(s)	569, 668
BshFI	GGCC	2 cut(s)	439, 460
BshVI	ATCGAT	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	26, 155, 698
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	439, 460
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	5 cut(s)	197, 481, 510, 542, 651
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	439, 460
BspCNI	CTCAG	4 cut(s)	183, 394, 400, 404
BspDI	ATCGAT	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	591
BspPI	GGATC	2 cut(s)	192, 550
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	149, 636
BssAI	RCCGGY	1 cut(s)	697
BssMI	GATC	5 cut(s)	197, 481, 510, 542, 651
BstBAI	YACGTR	1 cut(s)	589
BstDEI	CTNAG	5 cut(s)	170, 391, 402, 408, 641
BstF5I	GGATG	1 cut(s)	616
BstKTI	GATC	5 cut(s)	200, 484, 513, 545, 654
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	5 cut(s)	197, 481, 510, 542, 651
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 500, 694
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	5 cut(s)	67, 106, 139, 478, 487
BstV2I	GAAGAC	3 cut(s)	38, 405, 585
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	439, 460
BsuTUI	ATCGAT	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	591
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	18, 459
ClaI	ATCGAT	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	2 cut(s)	40, 679
CviJI	RGCY	8 cut(s)	302, 328, 377, 439, 460, 491, 634, 688
CviKI_1	RGCY	8 cut(s)	302, 328, 377, 439, 460, 491, 634, 688
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	5 cut(s)	170, 391, 402, 408, 641
DpnI	GATC	5 cut(s)	199, 483, 512, 544, 653
DpnII	GATC	5 cut(s)	197, 481, 510, 542, 651
Eco47I	GGWCC	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	386
FaeI	CATG	2 cut(s)	43, 682
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	39, 678
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	5 cut(s)	56, 95, 128, 492, 501
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	5 cut(s)	56, 95, 128, 492, 501
FspBI	CTAG	2 cut(s)	359, 495
GluI	GCNGC	5 cut(s)	56, 95, 128, 492, 501
HaeIII	GGCC	2 cut(s)	439, 460
HapII	CCGG	3 cut(s)	26, 155, 698
Hin1II	CATG	2 cut(s)	43, 682
HinfI	GANTC	4 cut(s)	353, 398, 404, 410
HpaII	CCGG	3 cut(s)	26, 155, 698
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	478, 724
Hpy188I	TCNGA	7 cut(s)	22, 173, 340, 394, 403, 409, 434
Hpy188III	TCNNGA	3 cut(s)	383, 479, 548
Hpy8I	GTNNAC	2 cut(s)	478, 724
HpyAV	CCTTC	3 cut(s)	316, 429, 436
HpyCH4IV	ACGT	3 cut(s)	49, 117, 588
HpyCH4V	TGCA	6 cut(s)	428, 557, 586, 649, 670, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 500, 694
HpyF3I	CTNAG	5 cut(s)	170, 391, 402, 408, 641
HpySE526I	ACGT	3 cut(s)	49, 117, 588
Hsp92II	CATG	2 cut(s)	43, 682
Kzo9I	GATC	5 cut(s)	197, 481, 510, 542, 651
LmnI	GCTCC	2 cut(s)	325, 627
LpnPI	CCDG	7 cut(s)	39, 162, 168, 368, 596, 649, 711
Lsp1109I	GCAGC	5 cut(s)	67, 106, 139, 478, 487
MaeI	CTAG	2 cut(s)	359, 495
MaeII	ACGT	3 cut(s)	49, 117, 588
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	5 cut(s)	199, 483, 512, 544, 653
MboI	GATC	5 cut(s)	197, 481, 510, 542, 651
MboII	GAAGA	4 cut(s)	43, 405, 411, 590
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	5 cut(s)	75, 174, 213, 386, 682
MlyI	GAGTC	4 cut(s)	362, 407, 413, 419
MmeI	TCCRAC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	690
MspI	CCGG	3 cut(s)	26, 155, 698
MspR9I	CCNGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	497, 500, 694
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	5 cut(s)	197, 481, 510, 542, 651
NlaIII	CATG	2 cut(s)	43, 682
NspI	RCATGY	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	5 cut(s)	57, 96, 129, 493, 502
PleI	GAGTC	4 cut(s)	361, 406, 412, 418
PmaCI	CACGTG	1 cut(s)	589
PmlI	CACGTG	1 cut(s)	589
PpsI	GAGTC	4 cut(s)	361, 406, 412, 418
Ppu21I	YACGTR	1 cut(s)	589
PspCI	CACGTG	1 cut(s)	589
PspPI	GGNCC	2 cut(s)	18, 459
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	5 cut(s)	56, 95, 128, 492, 501
Sau3AI	GATC	5 cut(s)	197, 481, 510, 542, 651
Sau96I	GGNCC	2 cut(s)	18, 459
SchI	GAGTC	4 cut(s)	362, 407, 413, 419
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	263
SinI	GGWCC	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	188, 548
SmoI	CTYRAG	2 cut(s)	188, 548
Sse9I	AATT	5 cut(s)	75, 174, 213, 386, 682
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	359, 495
StyD4I	CCNGG	1 cut(s)	153
TaiI	ACGT	3 cut(s)	52, 120, 591
TaqI	TCGA	1 cut(s)	513
TasI	AATT	5 cut(s)	75, 174, 213, 386, 682
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	5 cut(s)	55, 94, 127, 491, 500
TspDTI	ATGAA	2 cut(s)	405, 695
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	2 cut(s)	359, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.