Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Reverse (-)

60982390 .. 60984701

Gene Structure 2312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG430000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCAATGTCAAAGAGGTCCAAACCGGAGAAGACCCACATGCCCCAACGTCAGCAGCACCCATCATTTATGCGAATTGACAAACAAGAGAGGCAGCAACAACCCAAAGACCGAAGCTTTCAGGCACAAGACGTATGTAAGCAGCAGAAAATGGGTTCTTTTCCAGTCCCGGACGAGATTGCCCTCAGAATTGCTTCGTTACTTGAGGTACGATCCTTGATGGTTTCAATTTCTTTTGGTTGTTTATATTTTCCGCACTTGTTGATGTTTTTGTGCTCTGTTTTGGAAACAAAGGTGTGGGATTTGTGTGCGTTGGCTTGTTGTTGTAGGTGTTGGAAGGAGCTTTGTGGGTCTGATTGCCTATGGGAGTCTCTAGCAAAAAAGAGATGGGCTTCTCTGGAATTCTCAGACGAGTCTGAGTCTGAGTCGTCATCTTCCACTGCAATCAGAAGGCCGAAGGACAAGGGGTGGAGGCCCTTTTACGAGGAGGTTCACGATCATAAGGCTGCTAGTGCTGCTTTGGTGATCGATTATGTGGAGAAATGCTCAATATATGGATCTCTTGAGGTTGCACAATATCAAAGGGCGATTGAAGACCTGCACGCGATGAGATTTGGATATGAGGATGTAGTATTGCTCCTTTTGAAGCCAAGTCTTAGTGTGCAGATCAACCTACTCGGTTTGCATTACTGCATGAATTGGCTTAAAGTGCCGGTGTGTGGTTTTTCCCTCTGTGTCTACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

248

Amino Acids

28.59

Weight (kDa)

7.89

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	1 cut(s)	605
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	2 cut(s)	207, 565
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	3 cut(s)	228, 593, 646
AluBI	AGCT	2 cut(s)	117, 343
AluI	AGCT	2 cut(s)	117, 343
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	207, 565
AoxI	GGCC	2 cut(s)	452, 473
ApeKI	GCWGC	5 cut(s)	55, 94, 142, 506, 515
ApoI	RAATTY	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	18, 474
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	18
BbsI	GAAGAC	2 cut(s)	38, 600
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	5 cut(s)	67, 106, 154, 493, 502
BccI	CCATC	3 cut(s)	70, 214, 381
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	374, 510
BfuAI	ACCTGC	1 cut(s)	606
BisI	GCNGC	5 cut(s)	56, 95, 143, 507, 516
BlsI	GCNGC	5 cut(s)	57, 96, 144, 508, 517
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	18, 474
BmrFI	CCNGG	1 cut(s)	170
BpiI	GAAGAC	2 cut(s)	38, 600
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpuEI	CTTGAG	2 cut(s)	224, 584
BpuMI	CCSGG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse118I	RCCGGY	1 cut(s)	712
Bse1I	ACTGG	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	528
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	4 cut(s)	199, 408, 414, 420
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	5 cut(s)	67, 106, 154, 493, 502
BsgI	GTGCAG	2 cut(s)	584, 683
Bsh1236I	CGCG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	454, 475
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	26, 170, 713
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	454, 475
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	5 cut(s)	212, 496, 525, 557, 666
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	454, 475
BspCNI	CTCAG	4 cut(s)	198, 409, 415, 419
BspDI	ATCGAT	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	605
BspMI	ACCTGC	1 cut(s)	606
BspPI	GGATC	2 cut(s)	207, 565
BsrFI	RCCGGY	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	712
BssMI	GATC	5 cut(s)	212, 496, 525, 557, 666
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	5 cut(s)	185, 406, 417, 423, 656
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	605
BstKTI	GATC	5 cut(s)	215, 499, 528, 560, 669
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	5 cut(s)	212, 496, 525, 557, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 515, 709
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	5 cut(s)	67, 106, 154, 493, 502
BstV2I	GAAGAC	2 cut(s)	38, 600
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	454, 475
BsuTUI	ATCGAT	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	2 cut(s)	18, 474
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	40, 694
CviJI	RGCY	9 cut(s)	117, 317, 343, 392, 454, 475, 506, 649, 703
CviKI_1	RGCY	9 cut(s)	117, 317, 343, 392, 454, 475, 506, 649, 703
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	5 cut(s)	185, 406, 417, 423, 656
DpnI	GATC	5 cut(s)	214, 498, 527, 559, 668
DpnII	GATC	5 cut(s)	212, 496, 525, 557, 666
Eco47I	GGWCC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	401
FaeI	CATG	2 cut(s)	43, 697
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	39, 693
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	5 cut(s)	56, 95, 143, 507, 516
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	5 cut(s)	56, 95, 143, 507, 516
FspBI	CTAG	2 cut(s)	374, 510
GluI	GCNGC	5 cut(s)	56, 95, 143, 507, 516
HaeIII	GGCC	2 cut(s)	454, 475
HapII	CCGG	3 cut(s)	26, 170, 713
Hin1II	CATG	2 cut(s)	43, 697
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	4 cut(s)	368, 413, 419, 425
HpaII	CCGG	3 cut(s)	26, 170, 713
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	2 cut(s)	493, 739
Hpy188I	TCNGA	6 cut(s)	188, 355, 409, 418, 424, 449
Hpy188III	TCNNGA	3 cut(s)	398, 494, 563
Hpy8I	GTNNAC	2 cut(s)	493, 739
HpyAV	CCTTC	3 cut(s)	331, 444, 451
HpyCH4IV	ACGT	2 cut(s)	49, 132
HpyCH4V	TGCA	6 cut(s)	443, 572, 601, 664, 685, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 515, 709
HpyF3I	CTNAG	5 cut(s)	185, 406, 417, 423, 656
HpySE526I	ACGT	2 cut(s)	49, 132
Hsp92II	CATG	2 cut(s)	43, 697
Kzo9I	GATC	5 cut(s)	212, 496, 525, 557, 666
LmnI	GCTCC	2 cut(s)	340, 642
LpnPI	CCDG	7 cut(s)	39, 107, 177, 183, 383, 611, 726
Lsp1109I	GCAGC	5 cut(s)	67, 106, 154, 493, 502
MaeI	CTAG	2 cut(s)	374, 510
MaeII	ACGT	2 cut(s)	49, 132
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	5 cut(s)	214, 498, 527, 559, 668
MboI	GATC	5 cut(s)	212, 496, 525, 557, 666
MboII	GAAGA	3 cut(s)	43, 426, 605
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	5 cut(s)	75, 189, 228, 401, 697
MlyI	GAGTC	4 cut(s)	377, 422, 428, 434
MmeI	TCCRAC	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	1 cut(s)	705
MspI	CCGG	3 cut(s)	26, 170, 713
MspR9I	CCNGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	512, 515, 709
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	5 cut(s)	212, 496, 525, 557, 666
NlaIII	CATG	2 cut(s)	43, 697
NspI	RCATGY	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	5 cut(s)	57, 96, 144, 508, 517
PleI	GAGTC	4 cut(s)	376, 421, 427, 433
PpsI	GAGTC	4 cut(s)	376, 421, 427, 433
PspPI	GGNCC	2 cut(s)	18, 474
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	5 cut(s)	56, 95, 143, 507, 516
Sau3AI	GATC	5 cut(s)	212, 496, 525, 557, 666
Sau96I	GGNCC	2 cut(s)	18, 474
SchI	GAGTC	4 cut(s)	377, 422, 428, 434
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	278
SinI	GGWCC	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	203, 563
SmoI	CTYRAG	2 cut(s)	203, 563
Sse9I	AATT	5 cut(s)	75, 189, 228, 401, 697
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	2 cut(s)	374, 510
StyD4I	CCNGG	1 cut(s)	168
TaiI	ACGT	2 cut(s)	52, 135
TaqI	TCGA	1 cut(s)	528
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	5 cut(s)	75, 189, 228, 401, 697
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	5 cut(s)	55, 94, 142, 506, 515
TspDTI	ATGAA	1 cut(s)	710
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	738
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	2 cut(s)	374, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.