Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Reverse (-)

19545352 .. 19547490

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1092600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGCTCTCTTCTTCCCCTCCACGTTCCGGACGATATTGCTCTCCAAATTGCTTCCTTGTTACCGGTGTGGGATTTGTGCGCGTTGGGCAGCTGTTCTCGGTTTTGGAGGGAGCTCTGTAAGTCGGATTGCGTATGGGAGTGTCTGGTACGACGGCGATGGTCTCTTCTGGAATTTTCCGATCATGGGTCGTCTTCTTCTTCTTCCACTGCAATCGAAAAGCCCACGTCCATGGGGTGGAGGAGCTTTTACATCGAGCTGCACAACGAGAAGGCCGCGATTGCTGCCGCGGTGGTTCAATTCGTGGAGAAATGCTCGTCGTCTGAATCCCTTGAGGTTGGAGAGTATCAGAAGGCGATGCGAAATTTGAACCAACTGCAATTTGGATATCAGGATGTGGAAATGTTTCTTTTCAAACCAAAGCTTACCGTGCTTGTTAACCTACTTGGTTTGCACTACTGCCTGAATTGGCTGAGAGTACCGGCTGAATGTGTCCTGAAAGCGCTCCAGAGTAGCAAGATATCGGAGCGGCAAGTTTGTGTAAAATGGTGGACGCTTGGGAGATGGTCACATGGCTACCGCATGCGGGATGAGTTATGTTCCCGGTGCTTCACTCTGTTGGATTTTGGACTGGCCAAACAAGAGGAGGTTCTCGCGGTGCTATATCGAGGCGCCGTTCACGAGGTATTACGCGTTCAGATCTGTGTTGCCGATCCCTCAAGTACATCTTGGTCATGCCAAGGAGCACGCAGGGAGGGGAAGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

257

Amino Acids

29.16

Weight (kDa)

8.2

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	8 - 51	4.4e-08	F-box-like
F-box	PF00646	8 - 47	2.3e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	671
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccBSI	CCGCTC	1 cut(s)	529
AccII	CGCG	5 cut(s)	83, 278, 290, 656, 693
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	7 cut(s)	276, 288, 290, 529, 580, 586, 656
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	2 cut(s)	173, 364
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	3 cut(s)	150, 480, 724
AfeI	AGCGCT	1 cut(s)	504
AfiI	CCNNNNNNNGG	4 cut(s)	28, 186, 237, 586
AflIII	ACRYGT	1 cut(s)	691
AgeI	ACCGGT	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	299, 370, 415
AjiI	CACGTC	1 cut(s)	228
AluBI	AGCT	5 cut(s)	93, 115, 246, 259, 424
AluI	AGCT	5 cut(s)	93, 115, 246, 259, 424
Alw21I	GWGCWC	2 cut(s)	117, 748
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	707
Aor13HI	TCCGGA	1 cut(s)	28
Aor51HI	AGCGCT	1 cut(s)	504
AoxI	GGCC	2 cut(s)	273, 633
ApeKI	GCWGC	3 cut(s)	90, 259, 284
ApoI	RAATTY	2 cut(s)	173, 364
AsiGI	ACCGGT	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	3 cut(s)	83, 505, 674
AsuC2I	CCSGG	1 cut(s)	604
BalI	TGGCCA	1 cut(s)	635
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	2 cut(s)	8, 117
BauI	CACGAG	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	117, 748
BbvI	GCAGC	3 cut(s)	102, 246, 271
BccI	CCATC	2 cut(s)	153, 558
BceAI	ACGGC	2 cut(s)	170, 659
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	168
BfoI	RGCGCY	2 cut(s)	506, 675
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	6 cut(s)	91, 260, 276, 285, 288, 530
BlsI	GCNGC	6 cut(s)	92, 261, 277, 286, 289, 531
Bme1390I	CCNGG	1 cut(s)	604
BmgBI	CACGTC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	604
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpmI	CTGGAG	1 cut(s)	491
BpuEI	CTTGAG	2 cut(s)	353, 703
BpuMI	CCSGG	1 cut(s)	604
BsaHI	GRCGYC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	231, 288, 739
BsaWI	WCCGGW	2 cut(s)	28, 64
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 186, 237, 586
Bse118I	RCCGGY	2 cut(s)	64, 481
Bse1I	ACTGG	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	231, 288, 739
BseGI	GGATG	2 cut(s)	400, 595
BseLI	CCNNNNNNNGG	4 cut(s)	28, 186, 237, 586
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	2 cut(s)	256, 659
BseXI	GCAGC	3 cut(s)	102, 246, 271
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	5 cut(s)	83, 278, 290, 656, 693
BshFI	GGCC	2 cut(s)	275, 635
BshNI	GGYRCC	1 cut(s)	671
BshTI	ACCGGT	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	117, 748
BsiSI	CCGG	4 cut(s)	29, 65, 482, 604
BslI	CCNNNNNNNGG	4 cut(s)	28, 186, 237, 586
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	275, 635
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	8, 117, 748
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	3 cut(s)	181, 699, 712
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	7 cut(s)	276, 288, 290, 529, 580, 586, 656
BspANI	GGCC	2 cut(s)	275, 635
BspCNI	CTCAG	1 cut(s)	465
BspEI	TCCGGA	1 cut(s)	28
BspFNI	CGCG	5 cut(s)	83, 278, 290, 656, 693
BspLI	GGNNCC	1 cut(s)	673
BspPI	GGATC	1 cut(s)	707
BspT107I	GGYRCC	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	529
BsrFI	RCCGGY	2 cut(s)	64, 481
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	2 cut(s)	64, 481
BssECI	CCNNGG	3 cut(s)	231, 288, 739
BssMI	GATC	3 cut(s)	181, 699, 712
BssNI	GRCGYC	1 cut(s)	672
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	2 cut(s)	231, 739
Bst2BI	CACGAG	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	2 cut(s)	15, 171
BstACI	GRCGYC	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	584, 748
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	2 cut(s)	231, 288
BstF5I	GGATG	2 cut(s)	400, 595
BstFNI	CGCG	5 cut(s)	83, 278, 290, 656, 693
BstH2I	RGCGCY	2 cut(s)	506, 675
BstHHI	GCGC	3 cut(s)	83, 505, 674
BstKTI	GATC	3 cut(s)	184, 702, 715
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	181, 699, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 281, 284, 430
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	602
BstUI	CGCG	5 cut(s)	83, 278, 290, 656, 693
BstV1I	GCAGC	3 cut(s)	102, 246, 271
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	699
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	275, 635
BtgI	CCRYGG	2 cut(s)	231, 288
BtgZI	GCGATG	2 cut(s)	172, 371
BtrI	CACGTC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	400, 595
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	584, 748
CfoI	GCGC	3 cut(s)	83, 505, 674
Cfr10I	RCCGGY	2 cut(s)	64, 481
Cfr42I	CCGCGG	1 cut(s)	291
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	3 cut(s)	149, 479, 723
CspAI	ACCGGT	1 cut(s)	64
CviAII	CATG	5 cut(s)	185, 232, 572, 583, 735
CviQI	GTAC	3 cut(s)	149, 479, 723
DdeI	CTNAG	1 cut(s)	473
DinI	GGCGCC	1 cut(s)	673
DpnI	GATC	3 cut(s)	183, 701, 714
DpnII	GATC	3 cut(s)	181, 699, 712
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	2 cut(s)	15, 171
EarI	CTCTTC	2 cut(s)	15, 171
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	231, 739
Eco24I	GRGCYC	2 cut(s)	8, 117
Eco31I	GGTCTC	1 cut(s)	168
Eco32I	GATATC	2 cut(s)	389, 522
Eco47III	AGCGCT	1 cut(s)	504
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoRV	GATATC	2 cut(s)	389, 522
EcoT14I	CCWWGG	2 cut(s)	231, 739
EcoT38I	GRGCYC	2 cut(s)	8, 117
EgeI	GGCGCC	1 cut(s)	673
EheI	GGCGCC	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	231, 739
FaeI	CATG	5 cut(s)	188, 235, 575, 586, 738
FaiI	YATR	8 cut(s)	136, 186, 233, 573, 584, 598, 664, 736
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FatI	CATG	5 cut(s)	184, 231, 571, 582, 734
FauI	CCCGC	1 cut(s)	579
Fnu4HI	GCNGC	6 cut(s)	91, 260, 276, 285, 288, 530
FokI	GGATG	2 cut(s)	407, 602
FriOI	GRGCYC	2 cut(s)	8, 117
Fsp4HI	GCNGC	6 cut(s)	91, 260, 276, 285, 288, 530
GlaI	GCGC	3 cut(s)	82, 504, 673
GluI	GCNGC	6 cut(s)	91, 260, 276, 285, 288, 530
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	2 cut(s)	506, 675
HaeIII	GGCC	2 cut(s)	275, 635
HapII	CCGG	4 cut(s)	29, 65, 482, 604
HgaI	GACGC	1 cut(s)	562
HhaI	GCGC	3 cut(s)	83, 505, 674
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	5 cut(s)	188, 235, 575, 586, 738
Hin6I	GCGC	3 cut(s)	81, 503, 672
HinP1I	GCGC	3 cut(s)	81, 503, 672
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	326
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	4 cut(s)	29, 65, 482, 604
Hpy166II	GTNNAC	3 cut(s)	439, 552, 679
Hpy188I	TCNGA	6 cut(s)	127, 181, 325, 351, 526, 699
Hpy188III	TCNNGA	6 cut(s)	29, 170, 392, 496, 508, 680
Hpy8I	GTNNAC	3 cut(s)	439, 552, 679
Hpy99I	CGWCG	2 cut(s)	156, 322
HpyAV	CCTTC	2 cut(s)	265, 346
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	24, 227
HpyCH4V	TGCA	4 cut(s)	212, 262, 379, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 281, 284, 430
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	2 cut(s)	24, 227
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	5 cut(s)	188, 235, 575, 586, 738
HspAI	GCGC	3 cut(s)	81, 503, 672
KasI	GGCGCC	1 cut(s)	671
Kpn2I	TCCGGA	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	181, 699, 712
LmnI	GCTCC	5 cut(s)	112, 243, 510, 526, 743
Lsp1109I	GCAGC	3 cut(s)	102, 246, 271
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	2 cut(s)	24, 227
MaeIII	GTNAC	2 cut(s)	60, 567
MalI	GATC	3 cut(s)	183, 701, 714
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	3 cut(s)	181, 699, 712
MboII	GAAGA	6 cut(s)	5, 158, 186, 189, 192, 195
MflI	RGATCY	1 cut(s)	699
MhlI	GDGCHC	3 cut(s)	8, 117, 748
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	6 cut(s)	48, 173, 299, 364, 380, 466
MluI	ACGCGT	1 cut(s)	691
MluNI	TGGCCA	1 cut(s)	635
Mly113I	GGCGCC	1 cut(s)	672
MmeI	TCCRAC	3 cut(s)	105, 319, 600
Mox20I	TGGCCA	1 cut(s)	635
MroI	TCCGGA	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	635
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	635
MspA1I	CMGCKG	2 cut(s)	93, 290
MspI	CCGG	4 cut(s)	29, 65, 482, 604
MspR9I	CCNGG	1 cut(s)	604
MvnI	CGCG	5 cut(s)	83, 278, 290, 656, 693
MwoI	GCNNNNNNNGC	4 cut(s)	87, 281, 284, 430
NarI	GGCGCC	1 cut(s)	672
NciI	CCSGG	1 cut(s)	604
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	181, 699, 712
NlaIII	CATG	5 cut(s)	188, 235, 575, 586, 738
NlaIV	GGNNCC	1 cut(s)	673
NmuCI	GTSAC	1 cut(s)	567
NspI	RCATGY	1 cut(s)	586
PaeI	GCATGC	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	64
PkrI	GCNGC	6 cut(s)	92, 261, 277, 286, 289, 531
PluTI	GGCGCC	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	673
PsrI	GAACNNNNNNTAC	2 cut(s)	678, 710
PsuI	RGATCY	1 cut(s)	699
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	3 cut(s)	150, 480, 724
RsaNI	GTAC	3 cut(s)	149, 479, 723
RseI	CAYNNNNRTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	117
SacII	CCGCGG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	6 cut(s)	91, 260, 276, 285, 288, 530
Sau3AI	GATC	3 cut(s)	181, 699, 712
ScrFI	CCNGG	1 cut(s)	604
SduI	GDGCHC	3 cut(s)	8, 117, 748
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	673
Sfr303I	CCGCGG	1 cut(s)	291
SgrBI	CCGCGG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	332, 718
SmoI	CTYRAG	2 cut(s)	332, 718
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	6 cut(s)	48, 173, 299, 364, 380, 466
SsiI	CCGC	7 cut(s)	276, 288, 290, 529, 580, 586, 656
SspDI	GGCGCC	1 cut(s)	671
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	602
StyI	CCWWGG	2 cut(s)	231, 739
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	27, 230
TaqI	TCGA	3 cut(s)	216, 255, 667
TasI	AATT	6 cut(s)	48, 173, 299, 364, 380, 466
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	3 cut(s)	278, 290, 532
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	567
TseI	GCWGC	3 cut(s)	90, 259, 284
Tsp45I	GTSAC	1 cut(s)	567
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	237
XapI	RAATTY	2 cut(s)	173, 364
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.