Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006320

Physical Location & Seq

Genomic Coordinates Forward (+)

27815171 .. 27816742

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCAAATTGACAAACAAGAGACGCAGCAACAACCCAAAGACCAAAGCTTTCAGACACTAGGAACATCCAAGCAGCCGGAAATGGACTCTTTTCCGGTCCCGGACGAGATTGCCCTTAGGATCGCTTCGTTACTCGAGGTGTGGGATTTGTGTGCGTTGGCTTGTTGTTGTAGCTCTTGGAAGGAGCTCTGTGGGTCTGATTGCCTGTGGGAGTCTCTAACAATAAAGAGATGGCCTTCTCTGGAATTCTCAGATGAATCTGAGTCTGAGTCTGAGTCTTCTTCTTCAACTGCAATCAAAAGGCCGAAGGACAAGGGGTGGAGGCTTTTTTATGAGGAGATTCACAACCAGAAGGCTGCTATTGCTGCCGAGGTGATTGATTATGTGGAAAAATGTTCAATACATGGATCCCTTGAGGTTACACATTATCAGAAAACAATTTGGGACTTGTACGCGATCAAATTTGGATACGAGGATGCTGTATTCTTCCTTTTGAAGCCGAGTCTGGGTGTGCAACTCAATCTACTTGGTTTGCACTATTGCCTGAATTGGCTAAAAATGCCGGTATGTCTTTTACTTATGTGTCTACTTCTGAATTTGGGTTACAAATATATGTTTCTTAGTCTTTTATATGCTATTGCATTGCATGATACTCTGTTACTTCAACCTACGGTTGAAGAAAAAACTGATCACAACATCATCCAATCTCATGTTGTAACTGCTCTGTATATACATTTAGTTATTGAAATACATAATTGGCAGACCACTCGTGTTGTACAAACACTCCGAAGAAAGAAGATAGCAGCACGGGAACTTTGTGTTAGATGGTGGACGCTTGGCAAATGGTCCAATGGCTACGGTATTCGCATGAATGATGAACTGCATTCTCATCAATTCACACTAATGAATATTGCAATTGGCAAAAACGAGGAGGTTCTTGCAGCGCTTTATCGTGGTGCTATTCATGAGGTACTACGCGTTCAGATCACGTTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

333

Amino Acids

38.29

Weight (kDa)

5.96

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 75	1.3e-09	F-box-like
F-box	PF00646	34 - 71	4.9e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563 AT4G15563
fragaria_vesca	FvH4_2g38460
malus_domestica	MD00G1092600.v1.1 MD09G1114900.v1.1
prunus_persica	Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1 Prupe.1G365500_v2.0.a1
pyrus_communis	pycom08g01150
rosa_chinensis	RchiOBHm_Chr6g0302841
rosa_laevigata	RLG00000011133
rosa_roxburghii	Rroxscaffold_7G00165250
rosa_rugosa	Rorug06G0317700 Rorug06G0317700
rosa_samantha	Rh6AG430900 Rh6BG471800 Rh6CG443300 Rh6DG430000
rosa_wichuraiana	Rw6G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	586
AccII	CGCG	2 cut(s)	455, 978
AclWI	GGATC	3 cut(s)	128, 402, 415
AcsI	RAATTY	3 cut(s)	245, 461, 595
AfaI	GTAC	3 cut(s)	452, 777, 972
AfeI	AGCGCT	1 cut(s)	945
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	976
AgsI	TTSAA	6 cut(s)	288, 399, 496, 665, 677, 746
AluBI	AGCT	3 cut(s)	48, 174, 187
AluI	AGCT	3 cut(s)	48, 174, 187
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	14, 219
AlwI	GGATC	3 cut(s)	128, 402, 415
Ama87I	CYCGRG	1 cut(s)	134
Aor51HI	AGCGCT	1 cut(s)	945
AoxI	GGCC	2 cut(s)	233, 302
ApeKI	GCWGC	6 cut(s)	25, 73, 356, 365, 803, 941
ApoI	RAATTY	3 cut(s)	245, 461, 595
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	2 cut(s)	97, 846
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	97, 846
AxyI	CCTNAGG	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	6 cut(s)	37, 85, 343, 352, 815, 953
BccI	CCATC	2 cut(s)	225, 819
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciVI	GTATCC	1 cut(s)	461
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	14, 219
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	947
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	6 cut(s)	26, 74, 357, 366, 804, 942
BlsI	GCNGC	6 cut(s)	27, 75, 358, 367, 805, 943
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	2 cut(s)	97, 846
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	97, 846
BmiI	GGNNCC	2 cut(s)	99, 409
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse118I	RCCGGY	1 cut(s)	562
Bse21I	CCTNAGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	65, 481, 699
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	4 cut(s)	252, 258, 264, 264
BseRI	GAGGAG	2 cut(s)	350, 944
BseXI	GCAGC	6 cut(s)	37, 85, 343, 352, 815, 953
Bsh1236I	CGCG	2 cut(s)	455, 978
BshFI	GGCC	2 cut(s)	235, 304
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	77, 95, 101, 563
BslFI	GGGAC	2 cut(s)	83, 458
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	14, 219
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	83, 458
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	235, 304
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	120, 407, 456, 688, 984
BspANI	GGCC	2 cut(s)	235, 304
BspCNI	CTCAG	4 cut(s)	253, 259, 263, 265
BspFNI	CGCG	2 cut(s)	455, 978
BspHI	TCATGA	1 cut(s)	964
BspLI	GGNNCC	2 cut(s)	99, 409
BspPI	GGATC	3 cut(s)	128, 402, 415
BsrDI	GCAATG	1 cut(s)	641
BsrFI	RCCGGY	1 cut(s)	562
BsrGI	TGTACA	1 cut(s)	775
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	5 cut(s)	120, 407, 456, 688, 984
BssSI	CACGAG	1 cut(s)	768
Bst2BI	CACGAG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	673, 860
BstAUI	TGTACA	1 cut(s)	775
BstDEI	CTNAG	6 cut(s)	116, 250, 261, 267, 273, 620
BstF5I	GGATG	3 cut(s)	65, 481, 699
BstFNI	CGCG	2 cut(s)	455, 978
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	5 cut(s)	123, 410, 459, 691, 987
BstMAI	GTCTC	2 cut(s)	14, 219
BstMBI	GATC	5 cut(s)	120, 407, 456, 688, 984
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 365, 559
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	2 cut(s)	455, 978
BstV1I	GCAGC	6 cut(s)	37, 85, 343, 352, 815, 953
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	235, 304
BtsCI	GGATG	3 cut(s)	65, 481, 699
CciI	TCATGA	1 cut(s)	964
CfoI	GCGC	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	97, 846
CseI	GACGC	2 cut(s)	31, 841
Csp6I	GTAC	3 cut(s)	451, 776, 971
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	5 cut(s)	404, 647, 710, 868, 965
CviQI	GTAC	3 cut(s)	451, 776, 971
DdeI	CTNAG	6 cut(s)	116, 250, 261, 267, 273, 620
DpnI	GATC	5 cut(s)	122, 409, 458, 690, 986
DpnII	GATC	5 cut(s)	120, 407, 456, 688, 984
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	97, 846
Eco47III	AGCGCT	1 cut(s)	945
Eco53kI	GAGCTC	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	5 cut(s)	407, 650, 713, 871, 968
FaqI	GGGAC	2 cut(s)	83, 458
FatI	CATG	5 cut(s)	403, 646, 709, 867, 964
FbaI	TGATCA	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	6 cut(s)	26, 74, 357, 366, 804, 942
FokI	GGATG	3 cut(s)	52, 488, 686
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	6 cut(s)	26, 74, 357, 366, 804, 942
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	6 cut(s)	26, 74, 357, 366, 804, 942
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	235, 304
HapII	CCGG	4 cut(s)	77, 95, 101, 563
HgaI	GACGC	2 cut(s)	31, 841
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	5 cut(s)	407, 650, 713, 871, 968
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	8 cut(s)	86, 212, 257, 263, 269, 275, 340, 502
HpaII	CCGG	4 cut(s)	77, 95, 101, 563
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	587, 831
Hpy188III	TCNNGA	2 cut(s)	242, 965
Hpy8I	GTNNAC	2 cut(s)	587, 831
HpyAV	CCTTC	4 cut(s)	175, 246, 301, 346
HpyCH4III	ACNGT	2 cut(s)	673, 860
HpyCH4IV	ACGT	1 cut(s)	989
HpyCH4V	TGCA	9 cut(s)	4, 293, 514, 535, 641, 646, 883, 914, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 365, 559
HpyF3I	CTNAG	6 cut(s)	116, 250, 261, 267, 273, 620
HpySE526I	ACGT	1 cut(s)	989
Hsp92II	CATG	5 cut(s)	407, 650, 713, 871, 968
HspAI	GCGC	1 cut(s)	944
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	120, 407, 456, 688, 984
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	9 cut(s)	90, 108, 114, 218, 227, 362, 491, 557, 576
Lsp1109I	GCAGC	6 cut(s)	37, 85, 343, 352, 815, 953
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	989
MaeIII	GTNAC	5 cut(s)	129, 418, 602, 657, 715
MalI	GATC	5 cut(s)	122, 409, 458, 690, 986
MboI	GATC	5 cut(s)	120, 407, 456, 688, 984
MboII	GAAGA	7 cut(s)	270, 273, 276, 478, 689, 801, 808
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	9 cut(s)	6, 245, 438, 461, 547, 595, 754, 893, 915
MluI	ACGCGT	1 cut(s)	976
MlyI	GAGTC	6 cut(s)	80, 221, 272, 278, 284, 511
MnlI	CCTC	9 cut(s)	130, 315, 328, 364, 409, 466, 922, 925, 961
MslI	CAYNNNNRTG	1 cut(s)	902
MspI	CCGG	4 cut(s)	77, 95, 101, 563
MspR9I	CCNGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	883
MvnI	CGCG	2 cut(s)	455, 978
MwoI	GCNNNNNNNGC	3 cut(s)	362, 365, 559
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	5 cut(s)	120, 407, 456, 688, 984
NlaIII	CATG	5 cut(s)	407, 650, 713, 871, 968
NlaIV	GGNNCC	2 cut(s)	99, 409
NmeAIII	GCCGAG	2 cut(s)	394, 525
PaeR7I	CTCGAG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	964
PctI	GAATGC	1 cut(s)	883
PfeI	GAWTC	2 cut(s)	257, 340
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	6 cut(s)	27, 75, 358, 367, 805, 943
PleI	GAGTC	6 cut(s)	80, 220, 271, 277, 283, 510
PpsI	GAGTC	6 cut(s)	80, 220, 271, 277, 283, 510
Psp124BI	GAGCTC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	99, 409
PspPI	GGNCC	2 cut(s)	97, 846
PspXI	VCTCGAGB	1 cut(s)	134
PsrI	GAACNNNNNNTAC	2 cut(s)	963, 995
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	3 cut(s)	452, 777, 972
RsaNI	GTAC	3 cut(s)	451, 776, 971
RseI	CAYNNNNRTG	1 cut(s)	902
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	6 cut(s)	26, 74, 357, 366, 804, 942
Sau3AI	GATC	5 cut(s)	120, 407, 456, 688, 984
Sau96I	GGNCC	2 cut(s)	97, 846
SchI	GAGTC	6 cut(s)	80, 221, 272, 278, 284, 511
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	97, 846
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	2 cut(s)	134, 413
SmoI	CTYRAG	2 cut(s)	134, 413
Sse9I	AATT	9 cut(s)	6, 245, 438, 461, 547, 595, 754, 893, 915
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	673, 860
TaiI	ACGT	1 cut(s)	992
TaqI	TCGA	1 cut(s)	135
TasI	AATT	9 cut(s)	6, 245, 438, 461, 547, 595, 754, 893, 915
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	2 cut(s)	257, 340
TseI	GCWGC	6 cut(s)	25, 73, 356, 365, 803, 941
TspDTI	ATGAA	5 cut(s)	270, 884, 891, 920, 953
VpaK11BI	GGWCC	2 cut(s)	97, 846
XapI	RAATTY	3 cut(s)	245, 461, 595
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	586
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.