AT4G15630

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014303
Physical Location & Seq
Forward (+)
8917260 .. 8918875
1616 bp
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UTR
Exon/CDS
Intron
AT4G15630.1

Sequence Viewer

Length: 573 bp
ATGGAACACGAGAGCAAGAACAAGGTGGATGGGATGGAGATGGAGAAAGGAAAAAAAGAGAGTGGGTCGAGAAAAGGACTTGAGTTAACGATGAGAGTTTTGGCTTTGGTCCTAACAATGGTAGCTGCGACAGTACTTGGTGTTGCGAAACAAACAAAGGTTGTGCCTATAAAGCTTATTCCTACTTTACCTCCTCTTAATGTCTCTACAACCGCCAAAGCCTCTTACTTGTCTGCTTTTGTGTACAACATTTCTGCAAACGCGATAGCTTGCGGTTACACCGCGATCTCAATAGTGATTGTGATGATCAGCAAAGGCAAAAGAAGCAAAAGTTTGTTGATGGCGGTCTTGATAGGAGATCTTATGATGGTGGCTTTACTGTTTTCCAGCACTGGAGCCGCCGGAGCAATCGGGCTAATGGGTAGGCATGGGAACAAACATGTTATGTGGAAAAAAGTTTGTGGAGTGTTTGGCAAATTCTGTAACCAAGCTGCTGTTTCTGTTGCTATCACTCTTATTGCTTCAGTTGTGTTTATGCTTCTTGTTGTTCTTGATGCTTTGAAACTTCCTTAA

Protein Analysis

190

Amino Acids

20.11

Weight (kDa)

9.9

Isoelectric Point (pI)

19.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 24 - 177 9.8e-39 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15620 AT4G15630
fragaria_vesca FvH4_4g17290
malus_domestica MD13G1173100.v1.1
prunus_persica Prupe.1G141500_v2.0.a1
pyrus_communis pycom13g14870 pycom16g14610
rosa_chinensis RchiOBHm_Chr4g0421251
rosa_laevigata RLG00000007706
rosa_multiflora Rmu_sc0009290.1_g000018
rosa_roxburghii Rroxscaffold_5G00363490
rosa_rugosa Rorug04G0169700
rosa_samantha Rh4AG229900 Rh4BG232600 Rh4CG244400 Rh4DG228600
rosa_wichuraiana Rw4G020370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 263, 284
AciI CCGC 5 cut(s) 213, 273, 282, 344, 399
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 2 cut(s) 135, 245
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 1 cut(s) 562
AluBI AGCT 4 cut(s) 125, 175, 269, 491
AluI AGCT 4 cut(s) 125, 175, 269, 491
Alw26I GTCTC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 125, 491
ApoI RAATTY 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 8
BbvI GCAGC 2 cut(s) 112, 478
BccI CCATC 5 cut(s) 23, 28, 34, 334, 361
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 208
BglII AGATCT 1 cut(s) 358
BisI GCNGC 3 cut(s) 126, 399, 492
BlsI GCNGC 3 cut(s) 127, 400, 493
BmcAI AGTACT 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 34, 39
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 112, 478
Bsh1236I CGCG 2 cut(s) 263, 284
BsiSI CCGG 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 285, 306, 358
BspACI CCGC 5 cut(s) 213, 273, 282, 344, 399
BspFNI CGCG 2 cut(s) 263, 284
BspLI GGNNCC 1 cut(s) 397
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 397
BssMI GATC 3 cut(s) 285, 306, 358
BssSI CACGAG 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 133, 381
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 271
BstF5I GGATG 2 cut(s) 34, 39
BstFNI CGCG 2 cut(s) 263, 284
BstKTI GATC 3 cut(s) 288, 309, 361
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 285, 306, 358
BstMWI GCNNNNNNNGC 3 cut(s) 172, 324, 404
BstNSI RCATGY 1 cut(s) 443
BstUI CGCG 2 cut(s) 263, 284
BstV1I GCAGC 2 cut(s) 112, 478
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtsCI GGATG 2 cut(s) 34, 39
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 134, 244
CviAII CATG 2 cut(s) 428, 440
CviJI RGCY 9 cut(s) 104, 125, 175, 221, 269, 374, 398, 415, 491
CviKI_1 RGCY 9 cut(s) 104, 125, 175, 221, 269, 374, 398, 415, 491
CviQI GTAC 2 cut(s) 134, 244
DpnI GATC 3 cut(s) 287, 308, 360
DpnII GATC 3 cut(s) 285, 306, 358
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 507
FaeI CATG 2 cut(s) 431, 443
FaiI YATR 6 cut(s) 170, 365, 429, 441, 446, 536
FatI CATG 2 cut(s) 427, 439
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 126, 399, 492
FokI GGATG 2 cut(s) 41, 46
Fsp4HI GCNGC 3 cut(s) 126, 399, 492
GluI GCNGC 3 cut(s) 126, 399, 492
GsuI CTGGAG 1 cut(s) 414
HapII CCGG 1 cut(s) 402
Hin1II CATG 2 cut(s) 431, 443
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 173
HpaI GTTAAC 1 cut(s) 87
HpaII CCGG 1 cut(s) 402
Hpy166II GTNNAC 2 cut(s) 87, 244
Hpy188III TCNNGA 3 cut(s) 69, 349, 551
Hpy8I GTNNAC 2 cut(s) 87, 244
HpyCH4III ACNGT 2 cut(s) 133, 381
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 324, 404
Hsp92II CATG 2 cut(s) 431, 443
Ksp22I TGATCA 1 cut(s) 306
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 3 cut(s) 285, 306, 358
LmnI GCTCC 2 cut(s) 395, 404
LpnPI CCDG 3 cut(s) 378, 400, 415
Lsp1109I GCAGC 2 cut(s) 112, 478
LweI GCATC 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 275, 482
MalI GATC 3 cut(s) 287, 308, 360
MboI GATC 3 cut(s) 285, 306, 358
MflI RGATCY 1 cut(s) 358
MluCI AATT 1 cut(s) 476
MnlI CCTC 3 cut(s) 201, 204, 232
MseI TTAA 3 cut(s) 86, 198, 571
MspI CCGG 1 cut(s) 402
MvnI CGCG 2 cut(s) 263, 284
MwoI GCNNNNNNNGC 3 cut(s) 172, 324, 404
NdeII GATC 3 cut(s) 285, 306, 358
NlaIII CATG 2 cut(s) 431, 443
NlaIV GGNNCC 1 cut(s) 397
NspI RCATGY 1 cut(s) 443
PciI ACATGT 1 cut(s) 439
PkrI GCNGC 3 cut(s) 127, 400, 493
PscI ACATGT 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 135, 245
RsaNI GTAC 2 cut(s) 134, 244
SaqAI TTAA 3 cut(s) 86, 198, 571
SatI GCNGC 3 cut(s) 126, 399, 492
Sau3AI GATC 3 cut(s) 285, 306, 358
Sau96I GGNCC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 135
SetI ASST 7 cut(s) 27, 127, 162, 177, 193, 271, 493
SfaNI GCATC 1 cut(s) 544
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 476
SsiI CCGC 5 cut(s) 213, 273, 282, 344, 399
TaaI ACNGT 2 cut(s) 133, 381
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 476
TatI WGTACW 2 cut(s) 133, 243
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 3 cut(s) 86, 198, 571
Tru9I TTAA 3 cut(s) 86, 198, 571
TscAI CASTG 1 cut(s) 397
TseI GCWGC 2 cut(s) 125, 491
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.