Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009290.1

Orthogroup ID

OG0014303

Physical Location & Seq

Genomic Coordinates Forward (+)

85112 .. 86346

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009290.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggagagccagtacataggaggcaaaagcaataccgatggcggtgagatgccggagaaggaagtgagggtagcaaaccagagaagaattgggagttgtgagtcgcttgtgagggttttggccgtattactgactctggtcgctgctatagttcaagggttgaataagcagaccaaagttgctccaattaaggtggttccaaccttgccagccatttatattccactcacagccaaatggcatgacttatctgcttttgcgtacttgctggttgcaaatgtcatagcatgtgtatacgcagcattttccctagtcctttcctttgcaaaccggggcacaaagaagagcccactagggctattcatcattgtccttgatatattgatagtggggctgcttttctcagccatcggagccgccatggctatcggtctgatcgggtaccatgggaattcacatgtgcagtggaacaaggtctgcaatgtgtttgacagattttgtcaccaggtgatcgcatcagtggtcctgactcagtttgcagctcttgcatttatcttcctagttgtgcttgctatcttacgccttaacagaggtccacttaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0043424 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

201

Amino Acids

21.73

Weight (kDa)

9.66

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15620 AT4G15630
fragaria_vesca	FvH4_4g17290
malus_domestica	MD13G1173100.v1.1
prunus_persica	Prupe.1G141500_v2.0.a1
pyrus_communis	pycom13g14870 pycom16g14610
rosa_chinensis	RchiOBHm_Chr4g0421251
rosa_laevigata	RLG00000007706
rosa_multiflora	Rmu_sc0009290.1_g000018
rosa_roxburghii	Rroxscaffold_5G00363490
rosa_rugosa	Rorug04G0169700
rosa_samantha	Rh4AG229900 Rh4BG232600 Rh4CG244400 Rh4DG228600
rosa_wichuraiana	Rw4G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	42, 417
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	451
AdeI	CACNNNGTG	1 cut(s)	508
AfaI	GTAC	3 cut(s)	14, 263, 443
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	155, 163
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	1 cut(s)	542
AluI	AGCT	1 cut(s)	542
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	143, 299, 394, 539
ApoI	RAATTY	1 cut(s)	451
Asp718I	GGTACC	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	523, 593
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	56, 494, 520
AvaII	GGWCC	2 cut(s)	523, 593
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	350
BbvI	GCAGC	4 cut(s)	130, 311, 381, 551
BccI	CCATC	2 cut(s)	32, 416
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	506
BcnI	CCSGG	1 cut(s)	332
BfaI	CTAG	3 cut(s)	311, 353, 560
BfmI	CTRYAG	1 cut(s)	147
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	5 cut(s)	144, 300, 395, 417, 540
BlsI	GCNGC	5 cut(s)	145, 301, 396, 418, 541
Bme1390I	CCNGG	2 cut(s)	332, 506
Bme18I	GGWCC	2 cut(s)	523, 593
BmgT120I	GGNCC	2 cut(s)	523, 593
BmiI	GGNNCC	3 cut(s)	198, 415, 443
BmrFI	CCNGG	2 cut(s)	332, 506
BmsI	GCATC	2 cut(s)	39, 524
BoxI	GACNNNNGTC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	331, 420, 445
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	3 cut(s)	331, 420, 445
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	417, 545
BseNI	ACTGG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	4 cut(s)	130, 311, 381, 551
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	53, 331
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	338, 350
Bsp143I	GATC	2 cut(s)	435, 510
Bsp19I	CCATGG	2 cut(s)	420, 445
BspACI	CCGC	2 cut(s)	42, 417
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	416, 544
BspLI	GGNNCC	3 cut(s)	198, 415, 443
BspQI	GCTCTTC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	331, 420, 445
BssMI	GATC	2 cut(s)	435, 510
BssNAI	GTATAC	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	420, 445
Bst1107I	GTATAC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	210, 570
BstDEI	CTNAG	2 cut(s)	403, 531
BstDSI	CCRYGG	2 cut(s)	420, 445
BstKTI	GATC	2 cut(s)	438, 513
BstMBI	GATC	2 cut(s)	435, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 422, 545
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	2 cut(s)	291, 461
BstPAI	GACNNNNGTC	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	330, 504
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	4 cut(s)	130, 311, 381, 551
BstZ17I	GTATAC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	2 cut(s)	420, 445
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	470, 525
Cac8I	GCNNGC	2 cut(s)	210, 570
Cfr13I	GGNCC	2 cut(s)	523, 593
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	13, 262, 442
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	5 cut(s)	242, 288, 421, 446, 458
CviQI	GTAC	3 cut(s)	13, 262, 442
DdeI	CTNAG	2 cut(s)	403, 531
DpnI	GATC	2 cut(s)	437, 512
DpnII	GATC	2 cut(s)	435, 510
DraIII	CACNNNGTG	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	420, 445
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	523, 593
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	2 cut(s)	420, 445
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	2 cut(s)	420, 445
FaeI	CATG	5 cut(s)	245, 291, 424, 449, 461
FatI	CATG	5 cut(s)	241, 287, 420, 445, 457
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	144, 300, 395, 417, 540
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	144, 300, 395, 417, 540
FspBI	CTAG	3 cut(s)	311, 353, 560
GluI	GCNGC	5 cut(s)	144, 300, 395, 417, 540
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	2 cut(s)	53, 331
Hin1II	CATG	5 cut(s)	245, 291, 424, 449, 461
HinfI	GANTC	3 cut(s)	101, 133, 529
HpaII	CCGG	2 cut(s)	53, 331
HphI	GGTGA	3 cut(s)	56, 494, 520
Hpy166II	GTNNAC	2 cut(s)	295, 596
Hpy188I	TCNGA	2 cut(s)	413, 435
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	2 cut(s)	295, 596
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	275, 326, 463, 480, 539, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 422, 545
HpyF3I	CTNAG	2 cut(s)	403, 531
Hsp92II	CATG	5 cut(s)	245, 291, 424, 449, 461
KpnI	GGTACC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	435, 510
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	2 cut(s)	187, 413
Lsp1109I	GCAGC	4 cut(s)	130, 311, 381, 551
LweI	GCATC	2 cut(s)	39, 524
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	3 cut(s)	311, 353, 560
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	2 cut(s)	437, 512
MboI	GATC	2 cut(s)	435, 510
MboII	GAAGA	3 cut(s)	96, 355, 547
MhlI	GDGCHC	2 cut(s)	338, 350
MluCI	AATT	3 cut(s)	87, 186, 451
MlyI	GAGTC	3 cut(s)	110, 127, 523
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	14, 60, 105, 584
MseI	TTAA	3 cut(s)	189, 585, 600
MspI	CCGG	2 cut(s)	53, 331
MspR9I	CCNGG	2 cut(s)	332, 506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	413, 422, 545
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	2 cut(s)	420, 445
NdeII	GATC	2 cut(s)	435, 510
NlaIII	CATG	5 cut(s)	245, 291, 424, 449, 461
NlaIV	GGNNCC	3 cut(s)	198, 415, 443
NmuCI	GTSAC	1 cut(s)	500
NspI	RCATGY	2 cut(s)	291, 461
PciI	ACATGT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	145, 301, 396, 418, 541
PleI	GAGTC	3 cut(s)	109, 127, 523
PpsI	GAGTC	3 cut(s)	109, 127, 523
PscI	ACATGT	1 cut(s)	457
PshAI	GACNNNNGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	3 cut(s)	198, 415, 443
PspPI	GGNCC	2 cut(s)	523, 593
RsaI	GTAC	3 cut(s)	14, 263, 443
RsaNI	GTAC	3 cut(s)	13, 262, 442
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	189, 585, 600
SatI	GCNGC	5 cut(s)	144, 300, 395, 417, 540
Sau3AI	GATC	2 cut(s)	435, 510
Sau96I	GGNCC	2 cut(s)	523, 593
SchI	GAGTC	3 cut(s)	110, 127, 523
ScrFI	CCNGG	2 cut(s)	332, 506
SduI	GDGCHC	2 cut(s)	338, 350
SetI	ASST	6 cut(s)	195, 206, 477, 510, 544, 595
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	2 cut(s)	39, 524
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	523, 593
Sse9I	AATT	3 cut(s)	87, 186, 451
SsiI	CCGC	2 cut(s)	42, 417
SspMI	CTAG	3 cut(s)	311, 353, 560
StyD4I	CCNGG	2 cut(s)	330, 504
StyI	CCWWGG	2 cut(s)	420, 445
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	3 cut(s)	87, 186, 451
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	419
Tru1I	TTAA	3 cut(s)	189, 585, 600
Tru9I	TTAA	3 cut(s)	189, 585, 600
TscAI	CASTG	2 cut(s)	470, 525
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	4 cut(s)	143, 299, 394, 539
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	470, 525
VpaK11BI	GGWCC	2 cut(s)	523, 593
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	2 cut(s)	291, 461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	3 cut(s)	311, 353, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.