Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014303

Physical Location & Seq

Genomic Coordinates Reverse (-)

11118087 .. 11120699

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G141500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGAGCCAGGGCCAGTACATTGGGAGCAATAGTGGGATGGATGGGGTGGATCAGAAGGAAGGGAAGGTAGCAAACCAGAGAAAAACTGGGACTTGTGAGTCAATTCTGAGGATTTTGGCCTTCATGCTAACTGTAACTGCAGCTGTAGTTCTTGGGGTGAGTAAACAAACCGAAATTGTGTCAGTGAAGATCATCCCAACCTTGCCTCCTATTGATCTTCCAGCCACTGCTAAGTGGCATTACTTATCTGCTTTTGTGTACTTTGTGGTAGCAAATGCCATAGCATGTGCATATGCGGCATTTTCCCTAGTCCTTTCGTTTGCAAATCGGGGCACCAAGAGCAGCTTAGGGCTGGTGATCATCCTCCTTGATCTGTTAATGGTGGCATTGCTCTTCTCCTGCAATGGAGCCGCCACGGCAATTGGTCTGATGGGGTACCAAGGGAATTCACATGTGCAATGGAAGAAGGTCTGCAACGTGTTCGGGCGATTTTGTAACCATGCGGCAGCTGCAATAGTCCTGTCCATGCTTGGATCTCTTGCATTTATGTACCTAGTTGTGCTTGCTGCCTTAGGCCTCCACAGGAGGTCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0043424 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

200

Amino Acids

21.23

Weight (kDa)

9.42

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15620 AT4G15630
fragaria_vesca	FvH4_4g17290
malus_domestica	MD13G1173100.v1.1
prunus_persica	Prupe.1G141500_v2.0.a1
pyrus_communis	pycom13g14870 pycom16g14610
rosa_chinensis	RchiOBHm_Chr4g0421251
rosa_laevigata	RLG00000007706
rosa_multiflora	Rmu_sc0009290.1_g000018
rosa_roxburghii	Rroxscaffold_5G00363490
rosa_rugosa	Rorug04G0169700
rosa_samantha	Rh4AG229900 Rh4BG232600 Rh4CG244400 Rh4DG228600
rosa_wichuraiana	Rw4G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
Acc65I	GGTACC	1 cut(s)	438
AccB1I	GGYRCC	2 cut(s)	335, 438
AciI	CCGC	3 cut(s)	299, 414, 506
AclWI	GGATC	2 cut(s)	60, 544
AcsI	RAATTY	1 cut(s)	448
AfaI	GTAC	4 cut(s)	20, 263, 440, 554
AflIII	ACRYGT	2 cut(s)	454, 480
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	146, 348, 512
AluI	AGCT	3 cut(s)	146, 348, 512
AlwI	GGATC	2 cut(s)	60, 544
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	13, 120, 577
ApeKI	GCWGC	5 cut(s)	143, 345, 509, 512, 569
ApoI	RAATTY	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	172, 370
AxyI	CCTNAGG	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	335, 438
BbvI	GCAGC	5 cut(s)	155, 357, 499, 521, 556
BccI	CCATC	3 cut(s)	34, 38, 427
BceAI	ACGGC	1 cut(s)	435
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	360
BfaI	CTAG	2 cut(s)	311, 557
BfmI	CTRYAG	2 cut(s)	141, 147
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	8 cut(s)	144, 300, 346, 414, 507, 510, 513, 570
BlsI	GCNGC	8 cut(s)	145, 301, 347, 415, 508, 511, 514, 571
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	337, 412, 440
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	349
BsaJI	CCNNGG	3 cut(s)	10, 417, 442
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 193, 223
Bse1I	ACTGG	2 cut(s)	16, 94
Bse21I	CCTNAGG	1 cut(s)	574
Bse3DI	GCAATG	3 cut(s)	389, 412, 467
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	10, 417, 442
BseGI	GGATG	4 cut(s)	45, 49, 195, 363
BseMI	GCAATG	3 cut(s)	389, 412, 467
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	16, 94
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	5 cut(s)	155, 357, 499, 521, 556
BshFI	GGCC	3 cut(s)	15, 122, 579
BshNI	GGYRCC	2 cut(s)	335, 438
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	15, 122, 579
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
BspACI	CCGC	3 cut(s)	299, 414, 506
BspANI	GGCC	3 cut(s)	15, 122, 579
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	337, 412, 440
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	60, 544
BspQI	GCTCTTC	1 cut(s)	401
BspT107I	GGYRCC	2 cut(s)	335, 438
BsrDI	GCAATG	3 cut(s)	389, 412, 467
BsrI	ACTGG	2 cut(s)	16, 94
BssECI	CCNNGG	3 cut(s)	10, 417, 442
BssMI	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	5 cut(s)	110, 234, 349, 574, 594
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	4 cut(s)	45, 49, 195, 363
BstKTI	GATC	6 cut(s)	55, 195, 220, 363, 376, 539
BstMBI	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 342, 419, 512
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	291, 458
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	2 cut(s)	141, 147
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	5 cut(s)	155, 357, 499, 521, 556
BstX2I	RGATCY	1 cut(s)	536
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	536
Bsu36I	CCTNAGG	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	15, 122, 579
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	4 cut(s)	45, 49, 195, 363
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	192, 228
Cac8I	GCNNGC	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	19, 262, 439, 553
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	5 cut(s)	127, 288, 455, 503, 529
CviQI	GTAC	4 cut(s)	19, 262, 439, 553
DdeI	CTNAG	5 cut(s)	110, 234, 349, 574, 594
DpnI	GATC	6 cut(s)	54, 194, 219, 362, 375, 538
DpnII	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	579
Eco81I	CCTNAGG	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	5 cut(s)	130, 291, 458, 506, 532
FaiI	YATR	9 cut(s)	128, 284, 289, 295, 297, 456, 504, 530, 551
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	5 cut(s)	126, 287, 454, 502, 528
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	8 cut(s)	144, 300, 346, 414, 507, 510, 513, 570
FokI	GGATG	4 cut(s)	52, 56, 182, 350
Fsp4HI	GCNGC	8 cut(s)	144, 300, 346, 414, 507, 510, 513, 570
FspBI	CTAG	2 cut(s)	311, 557
GluI	GCNGC	8 cut(s)	144, 300, 346, 414, 507, 510, 513, 570
HaeIII	GGCC	3 cut(s)	15, 122, 579
Hin1II	CATG	5 cut(s)	130, 291, 458, 506, 532
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	2 cut(s)	172, 370
Hpy166II	GTNNAC	2 cut(s)	167, 262
Hpy188I	TCNGA	3 cut(s)	57, 111, 432
Hpy8I	GTNNAC	2 cut(s)	167, 262
HpyAV	CCTTC	5 cut(s)	52, 56, 61, 133, 463
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	8 cut(s)	143, 293, 326, 405, 460, 477, 515, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 342, 419, 512
HpyF3I	CTNAG	5 cut(s)	110, 234, 349, 574, 594
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	5 cut(s)	130, 291, 458, 506, 532
KpnI	GGTACC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	2 cut(s)	27, 410
LpnPI	CCDG	9 cut(s)	23, 29, 75, 92, 237, 341, 415, 536, 571
Lsp1109I	GCAGC	5 cut(s)	155, 357, 499, 521, 556
MaeI	CTAG	2 cut(s)	311, 557
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	136, 497
MalI	GATC	6 cut(s)	54, 194, 219, 362, 375, 538
MboI	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
MboII	GAAGA	4 cut(s)	202, 212, 388, 478
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	4 cut(s)	105, 177, 423, 448
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	5 cut(s)	105, 219, 377, 582, 590
MseI	TTAA	1 cut(s)	380
MspA1I	CMGCKG	2 cut(s)	146, 512
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	299, 342, 419, 512
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
NlaIII	CATG	5 cut(s)	130, 291, 458, 506, 532
NlaIV	GGNNCC	3 cut(s)	337, 412, 440
NspI	RCATGY	2 cut(s)	291, 458
PceI	AGGCCT	1 cut(s)	579
PciI	ACATGT	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	401
PkrI	GCNGC	8 cut(s)	145, 301, 347, 415, 508, 511, 514, 571
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PscI	ACATGT	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	337, 412, 440
PspPI	GGNCC	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	536
PvuII	CAGCTG	2 cut(s)	146, 512
RsaI	GTAC	4 cut(s)	20, 263, 440, 554
RsaNI	GTAC	4 cut(s)	19, 262, 439, 553
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	8 cut(s)	144, 300, 346, 414, 507, 510, 513, 570
Sau3AI	GATC	6 cut(s)	52, 192, 217, 360, 373, 536
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	9 cut(s)	72, 148, 206, 350, 474, 483, 514, 558, 593
SfcI	CTRYAG	2 cut(s)	141, 147
Sse9I	AATT	4 cut(s)	105, 177, 423, 448
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	3 cut(s)	299, 414, 506
SspMI	CTAG	2 cut(s)	311, 557
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	483
TasI	AATT	4 cut(s)	105, 177, 423, 448
TatI	WGTACW	2 cut(s)	18, 261
TauI	GCSGC	3 cut(s)	302, 416, 509
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	2 cut(s)	192, 235
TseI	GCWGC	5 cut(s)	143, 345, 509, 512, 569
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	192, 235
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	2 cut(s)	291, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XspI	CTAG	2 cut(s)	311, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.