Rroxscaffold_5G00363490

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014303
Physical Location & Seq
Forward (+)
44727752 .. 44729223
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363490.1

Sequence Viewer

Length: 606 bp
ATGGAGAGCCAGTACACAGGAGGCAAAAGCAATACCGATGGCGGTGGGATGCCAGAGAAGGAAGTGAGGGTAGCAATCCTTAGAAGAGTTGGGAGTTGTGAGTCACTTGTGAGGCTTTTGGCCGTATTACTAACTCTGGCCGCTGCTATAGTTCAAGGGTTGAATAAGCAGACCAAAGTTGCTCCAGTTAAGGTGGTTCCAACCTTGCCAGCCATTTATATTCCACTCACAGCCAAATGGCAATACTTGTCTGCTTTTGTGTACTTGCTGATTGCAAATGTAATAGCATGTGTATACGCAGCATTTTCCCTAGTCCTTTCCTTTGCAAACCGGGGCACAAAGAAGAGCTCACTAGGGCTATTCATCATTGTCCTTGATATATTGATAGTGGGGGTGCTTTTCTCAGCCATCGGAGCCGCCATGGCTATCGGTCTGATCGGGTACCATGGGAATTCACATGTGCAGTGGAACAAGGTCTGCAATGTGTTTGACAGATTTTGTCACCAGGTGGTCGCATCAGTGGTCCTGACTGTGTTTGCAGCTCTTGCATTTTTCTTCCTAGTTGTGCTTGCTATCTTACGCCTTAACAGAGGTCCACTTAAGTAG

Protein Analysis

201

Amino Acids

21.64

Weight (kDa)

9.83

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 30 - 182 7.6e-38 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15620 AT4G15630
fragaria_vesca FvH4_4g17290
malus_domestica MD13G1173100.v1.1
prunus_persica Prupe.1G141500_v2.0.a1
pyrus_communis pycom13g14870 pycom16g14610
rosa_chinensis RchiOBHm_Chr4g0421251
rosa_laevigata RLG00000007706
rosa_multiflora Rmu_sc0009290.1_g000018
rosa_roxburghii Rroxscaffold_5G00363490
rosa_rugosa Rorug04G0169700
rosa_samantha Rh4AG229900 Rh4BG232600 Rh4CG244400 Rh4DG228600
rosa_wichuraiana Rw4G020370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 294
AciI CCGC 3 cut(s) 42, 141, 417
AcoI YGGCCR 2 cut(s) 120, 138
AcsI RAATTY 1 cut(s) 451
AdeI CACNNNGTG 1 cut(s) 508
AfaI GTAC 3 cut(s) 14, 263, 443
AflII CTTAAG 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 2 cut(s) 155, 163
AjnI CCWGG 1 cut(s) 504
AluBI AGCT 2 cut(s) 348, 542
AluI AGCT 2 cut(s) 348, 542
Alw21I GWGCWC 1 cut(s) 350
AoxI GGCC 2 cut(s) 120, 138
ApeKI GCWGC 3 cut(s) 143, 299, 539
ApoI RAATTY 1 cut(s) 451
Asp718I GGTACC 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 523, 593
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 494
AvaII GGWCC 2 cut(s) 523, 593
BaeGI GKGCMC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 441
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 3 cut(s) 130, 311, 551
BccI CCATC 2 cut(s) 32, 416
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 506
BcnI CCSGG 1 cut(s) 332
BfaI CTAG 3 cut(s) 311, 353, 560
BfmI CTRYAG 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 599
BglI GCCNNNNNGGC 1 cut(s) 422
BisI GCNGC 5 cut(s) 141, 144, 300, 417, 540
BlsI GCNGC 5 cut(s) 142, 145, 301, 418, 541
Bme1390I CCNGG 2 cut(s) 332, 506
Bme18I GGWCC 2 cut(s) 523, 593
BmgT120I GGNCC 2 cut(s) 523, 593
BmiI GGNNCC 3 cut(s) 198, 415, 443
BmrFI CCNGG 2 cut(s) 332, 506
BmsI GCATC 2 cut(s) 39, 524
BpmI CTGGAG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 331, 420, 445
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 10, 185
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 3 cut(s) 331, 420, 445
BseGI GGATG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 10, 185
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 3 cut(s) 130, 311, 551
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 2 cut(s) 122, 140
BshNI GGYRCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 331
BsnI GGCC 2 cut(s) 122, 140
Bsp1286I GDGCHC 2 cut(s) 338, 350
Bsp143I GATC 1 cut(s) 435
Bsp19I CCATGG 2 cut(s) 420, 445
BspACI CCGC 3 cut(s) 42, 141, 417
BspANI GGCC 2 cut(s) 122, 140
BspCNI CTCAG 1 cut(s) 416
BspLI GGNNCC 3 cut(s) 198, 415, 443
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 441
BspTI CTTAAG 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 2 cut(s) 10, 185
BssECI CCNNGG 3 cut(s) 331, 420, 445
BssMI GATC 1 cut(s) 435
BssNAI GTATAC 1 cut(s) 295
BssT1I CCWWGG 2 cut(s) 420, 445
Bst1107I GTATAC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 2 cut(s) 79, 338
BstAFI CTTAAG 1 cut(s) 599
BstAPI GCANNNNNTGC 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 210, 570
BstDEI CTNAG 2 cut(s) 80, 403
BstDSI CCRYGG 2 cut(s) 420, 445
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 3 cut(s) 413, 422, 545
BstNI CCWGG 1 cut(s) 506
BstNSI RCATGY 2 cut(s) 291, 461
BstSCI CCNGG 2 cut(s) 330, 504
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 130, 311, 551
BstZ17I GTATAC 1 cut(s) 295
BsuRI GGCC 2 cut(s) 122, 140
BtgI CCRYGG 2 cut(s) 420, 445
BtsCI GGATG 1 cut(s) 54
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 470, 525
Cac8I GCNNGC 2 cut(s) 210, 570
Cfr13I GGNCC 2 cut(s) 523, 593
CsiI ACCWGGT 1 cut(s) 504
Csp6I GTAC 3 cut(s) 13, 262, 442
CviAII CATG 4 cut(s) 288, 421, 446, 458
CviQI GTAC 3 cut(s) 13, 262, 442
DdeI CTNAG 2 cut(s) 80, 403
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 508
EaeI YGGCCR 2 cut(s) 120, 138
Eam1104I CTCTTC 2 cut(s) 79, 338
EarI CTCTTC 2 cut(s) 79, 338
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 420, 445
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 523, 593
Eco53kI GAGCTC 1 cut(s) 348
EcoICRI GAGCTC 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 504
EcoT14I CCWWGG 2 cut(s) 420, 445
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 2 cut(s) 420, 445
FaeI CATG 4 cut(s) 291, 424, 449, 461
FaiI YATR 8 cut(s) 149, 219, 289, 295, 380, 422, 447, 459
FatI CATG 4 cut(s) 287, 420, 445, 457
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 5 cut(s) 141, 144, 300, 417, 540
FokI GGATG 1 cut(s) 61
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 141, 144, 300, 417, 540
FspBI CTAG 3 cut(s) 311, 353, 560
GluI GCNGC 5 cut(s) 141, 144, 300, 417, 540
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 2 cut(s) 122, 140
HapII CCGG 1 cut(s) 331
Hin1II CATG 4 cut(s) 291, 424, 449, 461
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 4 cut(s) 15, 262, 295, 596
Hpy188I TCNGA 2 cut(s) 413, 435
Hpy188III TCNNGA 1 cut(s) 526
Hpy8I GTNNAC 4 cut(s) 15, 262, 295, 596
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4V TGCA 6 cut(s) 275, 326, 463, 480, 539, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 422, 545
HpyF3I CTNAG 2 cut(s) 80, 403
Hsp92II CATG 4 cut(s) 291, 424, 449, 461
KpnI GGTACC 1 cut(s) 445
Kzo9I GATC 1 cut(s) 435
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 2 cut(s) 187, 413
Lsp1109I GCAGC 3 cut(s) 130, 311, 551
LweI GCATC 2 cut(s) 39, 524
MabI ACCWGGT 1 cut(s) 504
MaeI CTAG 3 cut(s) 311, 353, 560
MaeIII GTNAC 2 cut(s) 102, 500
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 3 cut(s) 96, 355, 547
MhlI GDGCHC 2 cut(s) 338, 350
MluCI AATT 1 cut(s) 451
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 14, 60, 105, 584
MseI TTAA 3 cut(s) 189, 585, 600
MspA1I CMGCKG 1 cut(s) 143
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 2 cut(s) 332, 506
MvaI CCWGG 1 cut(s) 506
MwoI GCNNNNNNNGC 3 cut(s) 413, 422, 545
NciI CCSGG 1 cut(s) 332
NcoI CCATGG 2 cut(s) 420, 445
NdeII GATC 1 cut(s) 435
NlaIII CATG 4 cut(s) 291, 424, 449, 461
NlaIV GGNNCC 3 cut(s) 198, 415, 443
NmuCI GTSAC 2 cut(s) 102, 500
NspI RCATGY 2 cut(s) 291, 461
PciI ACATGT 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 338
PkrI GCNGC 5 cut(s) 142, 145, 301, 418, 541
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PscI ACATGT 1 cut(s) 457
Psp124BI GAGCTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 504
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 3 cut(s) 198, 415, 443
PspPI GGNCC 2 cut(s) 523, 593
RsaI GTAC 3 cut(s) 14, 263, 443
RsaNI GTAC 3 cut(s) 13, 262, 442
SacI GAGCTC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 3 cut(s) 189, 585, 600
SatI GCNGC 5 cut(s) 141, 144, 300, 417, 540
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 2 cut(s) 523, 593
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 332, 506
SduI GDGCHC 2 cut(s) 338, 350
SetI ASST 7 cut(s) 195, 206, 350, 477, 510, 544, 595
SexAI ACCWGGT 1 cut(s) 504
SfaNI GCATC 2 cut(s) 39, 524
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 2 cut(s) 523, 593
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 1 cut(s) 451
SsiI CCGC 3 cut(s) 42, 141, 417
SspMI CTAG 3 cut(s) 311, 353, 560
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 330, 504
StyI CCWWGG 2 cut(s) 420, 445
TaaI ACNGT 1 cut(s) 532
TaqII GACCGA 1 cut(s) 419
TasI AATT 1 cut(s) 451
TatI WGTACW 2 cut(s) 12, 261
TauI GCSGC 2 cut(s) 143, 419
Tru1I TTAA 3 cut(s) 189, 585, 600
Tru9I TTAA 3 cut(s) 189, 585, 600
TscAI CASTG 2 cut(s) 470, 525
TseFI GTSAC 2 cut(s) 102, 500
TseI GCWGC 3 cut(s) 143, 299, 539
Tsp45I GTSAC 2 cut(s) 102, 500
TspDTI ATGAA 1 cut(s) 352
TspRI CASTG 2 cut(s) 470, 525
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 2 cut(s) 523, 593
XapI RAATTY 1 cut(s) 451
XceI RCATGY 2 cut(s) 291, 461
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 3 cut(s) 311, 353, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.