AT4G16444

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011490
Physical Location & Seq
Reverse (-)
9274438 .. 9276447
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16444.1

Sequence Viewer

Length: 537 bp
ATGGAAGGAGAGAAGCTTATAGAAGATCGCGGCTTTTTGGCTGCTCCTCTGACCTTCGTCGTCGTCGTTGTCTTCCAATTGCTATCCAAGTGGCTTGACCAATTGAAGAAGAAAGGGTCGAAGAACACGAGGGAATCAGAGCTGCGAACCGAAATTAAGCAGCTTTTGAGAGAGGCTAGTGCATTGTCTCAGCCAGCCACATTTGCGCAAGCAGCGAAACTTAGGAGGTCAGCAGCTACTAAAGAGAAAGAACTTGCACAATATCTGGAGCAGCATCACAAAGAAATCAAGCTTTCATACGATATGTATGGGAAGGGTCTGCTTGCTTCGAAGGTTGTGATATACCTAATCTTGGTATTGTGCTTCTGGAGGACTCCAATTGCCATTATCGCTAAGCAACTTGTTCAACCGTTTGGGACTTTGTTATCTTGGGGAACAGGAGGTCACATGACAGGCCATGTAATGGTCGGGATCATACCGTGGCTCATACTCTCAAACAGAGTGAGCAAATATGTGTGTAGGTTCGTGGAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

178

Amino Acids

20.21

Weight (kDa)

9.72

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHD5 PF04420 26 - 163 3.6e-08 CHD5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AccB7I CCANNNNNTGG 1 cut(s) 463
AccII CGCG 1 cut(s) 30
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 479
AfiI CCNNNNNNNGG 2 cut(s) 352, 463
AgsI TTSAA 2 cut(s) 106, 407
AluBI AGCT 5 cut(s) 16, 142, 163, 236, 292
AluI AGCT 5 cut(s) 16, 142, 163, 236, 292
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 479
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 6 cut(s) 41, 142, 160, 212, 233, 271
AspLEI GCGC 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 329
BauI CACGAG 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 64
BbvI GCAGC 6 cut(s) 28, 129, 172, 224, 245, 283
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 177
BisI GCNGC 7 cut(s) 31, 42, 143, 161, 213, 234, 272
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 7 cut(s) 32, 43, 144, 162, 214, 235, 273
BmsI GCATC 1 cut(s) 283
BoxI GACNNNNGTC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 64
BpmI CTGGAG 2 cut(s) 287, 388
Bpu1102I GCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 479
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 463
BseDI CCNNGG 1 cut(s) 479
BseLI CCNNNNNNNGG 2 cut(s) 352, 463
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 6 cut(s) 28, 129, 172, 224, 245, 283
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 456
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 2 cut(s) 352, 463
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 1 cut(s) 456
Bsp119I TTCGAA 1 cut(s) 329
Bsp143I GATC 2 cut(s) 25, 471
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 30
BspPI GGATC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 2 cut(s) 25, 471
BssSI CACGAG 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 411, 480
BstBI TTCGAA 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 195, 210, 324
BstDEI CTNAG 3 cut(s) 189, 221, 393
BstDSI CCRYGG 1 cut(s) 479
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 28, 474
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 25, 471
BstMWI GCNNNNNNNGC 3 cut(s) 203, 212, 389
BstPAI GACNNNNGTC 1 cut(s) 56
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 6 cut(s) 28, 129, 172, 224, 245, 283
BstV2I GAAGAC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 479
Cac8I GCNNGC 3 cut(s) 195, 210, 324
CfoI GCGC 1 cut(s) 208
CviAII CATG 2 cut(s) 448, 458
DdeI CTNAG 3 cut(s) 189, 221, 393
DpnI GATC 2 cut(s) 27, 473
DpnII GATC 2 cut(s) 25, 471
FaeI CATG 2 cut(s) 451, 461
FaqI GGGAC 1 cut(s) 430
FatI CATG 2 cut(s) 447, 457
Fnu4HI GCNGC 7 cut(s) 31, 42, 143, 161, 213, 234, 272
Fsp4HI GCNGC 7 cut(s) 31, 42, 143, 161, 213, 234, 272
FspBI CTAG 1 cut(s) 177
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 7 cut(s) 31, 42, 143, 161, 213, 234, 272
GsuI CTGGAG 2 cut(s) 287, 388
HaeIII GGCC 1 cut(s) 456
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 451, 461
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 2 cut(s) 14, 290
HinfI GANTC 2 cut(s) 134, 373
Hpy188I TCNGA 2 cut(s) 51, 139
Hpy188III TCNNGA 3 cut(s) 266, 367, 469
Hpy99I CGWCG 3 cut(s) 62, 65, 68
HpyAV CCTTC 3 cut(s) 64, 307, 325
HpyCH4III ACNGT 2 cut(s) 411, 480
HpyCH4V TGCA 2 cut(s) 182, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 212, 389
HpyF3I CTNAG 3 cut(s) 189, 221, 393
Hsp92II CATG 2 cut(s) 451, 461
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 25, 471
LmnI GCTCC 2 cut(s) 49, 268
LpnPI CCDG 5 cut(s) 207, 251, 352, 423, 438
Lsp1109I GCAGC 6 cut(s) 28, 129, 172, 224, 245, 283
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 443
MalI GATC 2 cut(s) 27, 473
MboI GATC 2 cut(s) 25, 471
MboII GAAGA 5 cut(s) 35, 64, 118, 121, 133
MfeI CAATTG 3 cut(s) 77, 101, 378
MluCI AATT 4 cut(s) 77, 101, 153, 378
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 6 cut(s) 57, 123, 166, 219, 363, 434
MseI TTAA 1 cut(s) 156
MunI CAATTG 3 cut(s) 77, 101, 378
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 203, 212, 389
NdeII GATC 2 cut(s) 25, 471
NlaIII CATG 2 cut(s) 451, 461
NmuCI GTSAC 1 cut(s) 443
NsbI TGCGCA 1 cut(s) 207
NspV TTCGAA 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 125
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 7 cut(s) 32, 43, 144, 162, 214, 235, 273
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PshAI GACNNNNGTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 7 cut(s) 31, 42, 143, 161, 213, 234, 272
Sau3AI GATC 2 cut(s) 25, 471
SchI GAGTC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 329
Sse9I AATT 4 cut(s) 77, 101, 153, 378
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 411, 480
TaqI TCGA 2 cut(s) 119, 329
TasI AATT 4 cut(s) 77, 101, 153, 378
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 6 cut(s) 41, 142, 160, 212, 233, 271
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 463
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.