MD15G1231800.v1.1

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011490
Physical Location & Seq
Forward (+)
18944038 .. 18946847
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1231800.v1.1.491

Sequence Viewer

Length: 804 bp
ATGGGAGAGGTAATAGAAACCCTACCGGAGCACCGGAGCTTGTTAGCAGCTCCGATTGTATTCATTATCGTCGTCGCTTTCCAATTCTTCTCCAGGTGGCTAGAGCAGTTAAAGAAGGGAGTGAAGAGTGCTACGGCAACCCGATTGCGGGGAGAAATTAAAGACATCTTAAAGGAGGCAAGCTACTCGTCGCAGATTGCATCTGCTAAGGAGAAAGAACTTGCAAATTGCACTAGTTTGCAACTCCATCCTTTCAATTATGTTTTTATTCTGATCATATATACAATTACATACCTGCATTCTTGGGGCACATGTATATATCCATATATCGTCACAGAGGGTAACTATATGCAATATGCTTGGGATCAAAGTTGTGTTTGTATAGTAACATATACACTTTACAGCTACGATGTTTTTAAGCGAAGGGTTGAATGGCTAATAAAGTTTATGCAGTTTTCAATGCCATATTATTTCCATGTAAGCCTGACCCACCAGGTGAAAGATTCTAACAGTGGTACCTGCCTTCCAGATCAAGAGTTACATGGCAAGGAGATAAAACTTTCATACGACGTGTATCTGAGAATTTTGTTCATCTTAAAGGTCTTAACATATGTTGTGCTGGTTTGCTGGTTTTGGAGGGTTCCTGTTGGGTCCATATCGCAACAACTTGTGCAACCATTTGGGAAGATGATATCATGGAGGGCTGGAGGAGTTGTAAACGAAAATGTTATGGTAGGAATAATTCCTTGGTTGATATTATCTACCAGGGTCAGCAAGTTCATATGTCGACTTGCCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

268

Amino Acids

31.02

Weight (kDa)

9.06

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 303, 527
Acc65I GGTACC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 787
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 582
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 2 cut(s) 147, 148
AflIII ACRYGT 2 cut(s) 311, 570
AgsI TTSAA 3 cut(s) 256, 431, 459
AhlI ACTAGT 1 cut(s) 233
AjiI CACGTC 1 cut(s) 571
AjnI CCWGG 3 cut(s) 92, 492, 764
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AluBI AGCT 4 cut(s) 39, 50, 183, 405
AluI AGCT 4 cut(s) 39, 50, 183, 405
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 582
Asp718I GGTACC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 1 cut(s) 651
BaeGI GKGCMC 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 499, 532
BanI GGYRCC 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 255
BceAI ACGGC 1 cut(s) 150
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 3 cut(s) 94, 494, 766
BclI TGATCA 1 cut(s) 273
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 3 cut(s) 101, 234, 802
BfuAI ACCTGC 2 cut(s) 303, 527
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 94, 494, 766
Bme18I GGWCC 1 cut(s) 651
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 3 cut(s) 517, 642, 652
BmrFI CCNGG 3 cut(s) 94, 494, 766
BmsI GCATC 1 cut(s) 209
BpmI CTGGAG 2 cut(s) 76, 726
Bpu10I CCTNAGC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 746, 765
BsaWI WCCGGW 2 cut(s) 25, 33
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 148
BseBI CCWGG 3 cut(s) 94, 494, 766
BseDI CCNNGG 2 cut(s) 746, 765
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 147, 148
BseMII CTCAG 1 cut(s) 569
BseRI GAGGAG 1 cut(s) 723
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 26, 34
BslI CCNNNNNNNGG 2 cut(s) 147, 148
BsmI GAATGC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 33, 311
Bsp143I GATC 3 cut(s) 273, 364, 529
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 570
BspLI GGNNCC 3 cut(s) 517, 642, 652
BspMI ACCTGC 2 cut(s) 303, 527
BspPI GGATC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 515
BssECI CCNNGG 2 cut(s) 746, 765
BssMI GATC 3 cut(s) 273, 364, 529
BssT1I CCWWGG 1 cut(s) 746
Bst2UI CCWGG 3 cut(s) 94, 494, 766
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 207, 578
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 3 cut(s) 276, 367, 532
BstMBI GATC 3 cut(s) 273, 364, 529
BstNI CCWGG 3 cut(s) 94, 494, 766
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 92, 492, 764
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 59
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 517
BveI ACCTGC 2 cut(s) 303, 527
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 651
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 1 cut(s) 516
CviAII CATG 4 cut(s) 312, 476, 542, 696
CviJI RGCY 8 cut(s) 39, 50, 100, 183, 405, 436, 483, 704
CviKI_1 RGCY 8 cut(s) 39, 50, 100, 183, 405, 436, 483, 704
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 2 cut(s) 207, 578
DpnI GATC 3 cut(s) 275, 366, 531
DpnII GATC 3 cut(s) 273, 364, 529
DraIII CACNNNGTG 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 746
Eco32I GATATC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 651
EcoRII CCWGG 3 cut(s) 92, 492, 764
EcoRV GATATC 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 746
ErhI CCWWGG 1 cut(s) 746
FaeI CATG 4 cut(s) 315, 479, 545, 699
FatI CATG 4 cut(s) 311, 475, 541, 695
FauI CCCGC 1 cut(s) 141
FauNDI CATATG 2 cut(s) 610, 782
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 787
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 3 cut(s) 101, 234, 802
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 76, 726
HapII CCGG 2 cut(s) 26, 34
Hin1II CATG 4 cut(s) 315, 479, 545, 699
HincII GTYRAC 1 cut(s) 788
HindII GTYRAC 1 cut(s) 788
HinfI GANTC 1 cut(s) 503
HpaII CCGG 2 cut(s) 26, 34
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 2 cut(s) 718, 788
Hpy188I TCNGA 3 cut(s) 54, 273, 579
Hpy188III TCNNGA 2 cut(s) 527, 533
Hpy8I GTNNAC 2 cut(s) 718, 788
Hpy99I CGWCG 4 cut(s) 74, 77, 193, 572
HpyAV CCTTC 3 cut(s) 109, 417, 533
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 8 cut(s) 200, 224, 231, 241, 298, 352, 451, 673
HpyF3I CTNAG 2 cut(s) 207, 578
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 4 cut(s) 315, 479, 545, 699
KpnI GGTACC 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 3 cut(s) 273, 364, 529
LmnI GCTCC 3 cut(s) 28, 36, 55
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 209
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 3 cut(s) 101, 234, 802
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 4 cut(s) 331, 341, 385, 537
MalI GATC 3 cut(s) 275, 366, 531
MboI GATC 3 cut(s) 273, 364, 529
MboII GAAGA 3 cut(s) 79, 136, 697
MhlI GDGCHC 2 cut(s) 33, 311
MluCI AATT 7 cut(s) 83, 156, 226, 256, 285, 582, 741
MnlI CCTC 5 cut(s) 169, 331, 630, 693, 701
MseI TTAA 6 cut(s) 110, 159, 170, 417, 596, 605
MspI CCGG 2 cut(s) 26, 34
MspR9I CCNGG 3 cut(s) 94, 494, 766
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 3 cut(s) 94, 494, 766
NdeI CATATG 2 cut(s) 610, 782
NdeII GATC 3 cut(s) 273, 364, 529
NlaIII CATG 4 cut(s) 315, 479, 545, 699
NlaIV GGNNCC 3 cut(s) 517, 642, 652
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 315
PciI ACATGT 1 cut(s) 311
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 49
PscI ACATGT 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 92, 492, 764
PspGI CCWGG 3 cut(s) 92, 492, 764
PspN4I GGNNCC 3 cut(s) 517, 642, 652
PspPI GGNCC 1 cut(s) 651
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
SalI GTCGAC 1 cut(s) 786
SaqAI TTAA 6 cut(s) 110, 159, 170, 417, 596, 605
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 3 cut(s) 273, 364, 529
Sau96I GGNCC 1 cut(s) 651
ScrFI CCNGG 3 cut(s) 94, 494, 766
SduI GDGCHC 2 cut(s) 33, 311
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 1 cut(s) 209
SinI GGWCC 1 cut(s) 651
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 7 cut(s) 83, 156, 226, 256, 285, 582, 741
SsiI CCGC 1 cut(s) 148
SspMI CTAG 3 cut(s) 101, 234, 802
StyD4I CCNGG 3 cut(s) 92, 492, 764
StyI CCWWGG 1 cut(s) 746
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 1 cut(s) 573
TaqI TCGA 1 cut(s) 787
TasI AATT 7 cut(s) 83, 156, 226, 256, 285, 582, 741
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 6 cut(s) 110, 159, 170, 417, 596, 605
Tru9I TTAA 6 cut(s) 110, 159, 170, 417, 596, 605
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 52, 552, 580, 769
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 1 cut(s) 582
XceI RCATGY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 787
XspI CTAG 3 cut(s) 101, 234, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.