pycom02g09060

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011490
Physical Location & Seq
Forward (+)
6263804 .. 6266003
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09060.2

Sequence Viewer

Length: 654 bp
ATGAGATTTGGACTGCGGTCTATAGGAACTGACCCTGTTGCAGAGAAGCATAGAAAATCCGAAACGAAGGAGGTGGTGTCTCGTACGGATCGAGCAAGGAAGGAATCAGACATGGGAGAGGTAATAGAAACCCTACCGGCGCACCGTAGCTCCTTCGCAGCTCCAATTGTATTCATCGTCGTCGTCGCTTTCCAATTCCTCTCTAGGTGGCTGGAACAGTTAAAGAAGGGAGGAGTTAAGAATGCCACGGCAAGCCGATTGCGTGGAGAAATTAAAGACCTCTTGAAGGAGGCAAGCTCCATGTCCCAGCCGTCGACATTTGCGCAAGCTGCGAAACTTCGGAGGATGGCAGCTGCTAAGGAGAAAGAACTTGCAAATTATCAAGAATTACACGGCAAGGAGATAAAACTTTCATATGATTTGTATCTGAGAATTTTGTTCATCTTAAAGGTCTTGACATATATTGTGCTGGTTTGCTGGTTTTGGAGGGTTCCTGTTGCCTCCATATCACAACAACTTGTGCAACCCTTTGGGAAGCTGATATCATGGAGGGCCGGAGGAATTGTAAACGAAAATGTTATGGTAGGAATTATTCCTTGGTTGATATTATCTACCAGGGTTAGCAAGTTCGTATGTCGACTTGCCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

218

Amino Acids

24.64

Weight (kDa)

10.15

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AccI GTMKAC 2 cut(s) 314, 637
AciI CCGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 432
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 614
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 6 cut(s) 150, 161, 297, 329, 353, 538
AluI AGCT 6 cut(s) 150, 161, 297, 329, 353, 538
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 96
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 4 cut(s) 158, 329, 350, 353
ApoI RAATTY 1 cut(s) 432
AspLEI GCGC 2 cut(s) 142, 325
AspS9I GGNCC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 170, 316, 340, 362
BccI CCATC 1 cut(s) 340
BceAI ACGGC 3 cut(s) 264, 295, 409
BciT130I CCWGG 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 204, 652
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 4 cut(s) 159, 330, 351, 354
BlsI GCNGC 4 cut(s) 160, 331, 352, 355
Bme1390I CCNGG 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 616
BoxI GACNNNNGTC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu10I CCTNAGC 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 246, 596, 615
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 134, 164, 549, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 3 cut(s) 246, 596, 615
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 4 cut(s) 170, 316, 340, 362
BseYI CCCAGC 1 cut(s) 306
BshFI GGCC 1 cut(s) 554
BsiSI CCGG 2 cut(s) 137, 555
BsiWI CGTACG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 554
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 492
BspPI GGATC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 3 cut(s) 246, 596, 615
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 146, 219
BstC8I GCNNGC 3 cut(s) 253, 295, 327
BstDEI CTNAG 2 cut(s) 357, 428
BstDSI CCRYGG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 351
BstHHI GCGC 2 cut(s) 142, 325
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 616
BstPAI GACNNNNGTC 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 4 cut(s) 170, 316, 340, 362
BsuRI GGCC 1 cut(s) 554
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 351
Cac8I GCNNGC 3 cut(s) 253, 295, 327
CfoI GCGC 2 cut(s) 142, 325
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 552
Csp6I GTAC 1 cut(s) 84
CviAII CATG 3 cut(s) 112, 301, 546
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 2 cut(s) 357, 428
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 596
Eco32I GATATC 1 cut(s) 543
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 614
EcoRV GATATC 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 3 cut(s) 115, 304, 549
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 111, 300, 545
FauNDI CATATG 1 cut(s) 415
FblI GTMKAC 2 cut(s) 314, 637
Fnu4HI GCNGC 4 cut(s) 159, 330, 351, 354
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 4 cut(s) 159, 330, 351, 354
FspBI CTAG 2 cut(s) 204, 652
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 2 cut(s) 141, 324
GluI GCNGC 4 cut(s) 159, 330, 351, 354
GsaI CCCAGC 1 cut(s) 310
HaeIII GGCC 1 cut(s) 554
HapII CCGG 2 cut(s) 137, 555
HhaI GCGC 2 cut(s) 142, 325
Hin1II CATG 3 cut(s) 115, 304, 549
Hin6I GCGC 2 cut(s) 140, 323
HinP1I GCGC 2 cut(s) 140, 323
HincII GTYRAC 2 cut(s) 315, 638
HindII GTYRAC 2 cut(s) 315, 638
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 137, 555
Hpy166II GTNNAC 3 cut(s) 315, 568, 638
Hpy188I TCNGA 4 cut(s) 61, 109, 342, 429
Hpy188III TCNNGA 3 cut(s) 283, 383, 454
Hpy8I GTNNAC 3 cut(s) 315, 568, 638
Hpy99I CGWCG 4 cut(s) 182, 185, 188, 316
HpyAV CCTTC 5 cut(s) 61, 94, 163, 220, 280
HpyCH4III ACNGT 2 cut(s) 146, 219
HpyCH4V TGCA 3 cut(s) 41, 374, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 357, 428
Hsp92II CATG 3 cut(s) 115, 304, 549
HspAI GCGC 2 cut(s) 140, 323
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 155, 166, 302
Lsp1109I GCAGC 4 cut(s) 170, 316, 340, 362
MaeI CTAG 2 cut(s) 204, 652
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MfeI CAATTG 1 cut(s) 165
MluCI AATT 8 cut(s) 165, 194, 270, 376, 386, 432, 561, 588
MseI TTAA 4 cut(s) 221, 237, 273, 446
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 2 cut(s) 137, 555
MspR9I CCNGG 1 cut(s) 616
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeI CATATG 1 cut(s) 415
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 115, 304, 549
NlaIV GGNNCC 1 cut(s) 492
NsbI TGCGCA 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 104
Pfl23II CGTACG 1 cut(s) 83
PkrI GCNGC 4 cut(s) 160, 331, 352, 355
PshAI GACNNNNGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 614
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 614
PspLI CGTACG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 552
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SalI GTCGAC 2 cut(s) 313, 636
SaqAI TTAA 4 cut(s) 221, 237, 273, 446
SatI GCNGC 4 cut(s) 159, 330, 351, 354
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 21
Sse9I AATT 8 cut(s) 165, 194, 270, 376, 386, 432, 561, 588
SsiI CCGC 1 cut(s) 16
SspMI CTAG 2 cut(s) 204, 652
StyD4I CCNGG 1 cut(s) 614
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 2 cut(s) 146, 219
TaqI TCGA 3 cut(s) 91, 314, 637
TasI AATT 8 cut(s) 165, 194, 270, 376, 386, 432, 561, 588
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 4 cut(s) 221, 237, 273, 446
Tru9I TTAA 4 cut(s) 221, 237, 273, 446
TseI GCWGC 4 cut(s) 158, 329, 350, 353
TspDTI ATGAA 3 cut(s) 163, 402, 430
TspGWI ACGGA 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 432
XmiI GTMKAC 2 cut(s) 314, 637
XspI CTAG 2 cut(s) 204, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.