FvH4_1g10370

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011490
Physical Location & Seq
Forward (+)
5660316 .. 5662481
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10370.t1

Sequence Viewer

Length: 546 bp
ATGGAAACCCTATCGGAGCACCGAATCTCGGCCGCAGCTCCCGCCGTCTTCATAATCGTCGTCGCTTTCCAGTTTCTCTCCAAGTGGCTCGAACAGTTAAAGAAGCGAGGACCAGTGACTGCTGAGGAGACTCGGTTGCGGAGAGAGATCAAACAGCTTTCCAAAGAGGTAAGCTCCTTGTCACAGCCAGCAACATTTGCGCAAGCTGCAAAGCTTAGGAGGATGGCGACTGCGAAGGAGAAAGAACTCACAAAGCAGTTACAGGGCAAGGATTTAAAAGGTTCATATGATTTGTATCTGAAAGTTTTGTTCACCTCCAAGGTCTTGACATATCTTGCGCTAGTTTGCTGGTTTTGGAGGCTTCCAGTTGCCTCCATATCACAACAACTTGTTCAACCCTTTGGAAAGGTGATATCATGGAGGGCTGGAGGAGTATTAAATGGAAATGTTATGGTAAATAAGATTGGACCGTACTTTTTTGTTCTTGCTGTAGTATACTTTTCTTGGGAGAATTGTTGCAGTTGCCTTTGTGTATCGAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

182

Amino Acids

20.4

Weight (kDa)

9.71

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHD5 PF04420 34 - 139 1.2e-06 CHD5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 201
AccI GTMKAC 1 cut(s) 495
AciI CCGC 3 cut(s) 33, 42, 139
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 395
AluBI AGCT 6 cut(s) 38, 157, 174, 206, 214, 543
AluI AGCT 6 cut(s) 38, 157, 174, 206, 214, 543
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 35, 206, 540
AspLEI GCGC 2 cut(s) 202, 340
AspS9I GGNCC 2 cut(s) 110, 467
AsuHPI GGTGA 2 cut(s) 304, 421
AvaII GGWCC 2 cut(s) 110, 467
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 47, 193
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 4 cut(s) 33, 36, 207, 541
BlsI GCNGC 4 cut(s) 34, 37, 208, 542
Bme18I GGWCC 2 cut(s) 110, 467
BmgT120I GGNCC 2 cut(s) 110, 467
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 447
Bpu10I CCTNAGC 2 cut(s) 123, 215
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 70, 113, 365
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 3 cut(s) 70, 113, 365
BseRI GAGGAG 2 cut(s) 140, 444
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 47, 193
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 3 cut(s) 33, 42, 139
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 115
BsrI ACTGG 3 cut(s) 70, 113, 365
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 147
BssNAI GTATAC 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 318
Bst1107I GTATAC 1 cut(s) 496
Bst4CI ACNGT 2 cut(s) 96, 471
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 189, 204
BstDEI CTNAG 2 cut(s) 123, 215
BstF5I GGATG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 202, 340
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 41, 197, 206
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 47, 193
BstV2I GAAGAC 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 496
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 189, 204
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 2 cut(s) 202, 340
Cfr13I GGNCC 2 cut(s) 110, 467
Csp6I GTAC 1 cut(s) 472
CviAII CATG 1 cut(s) 417
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 2 cut(s) 123, 215
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 318
Eco32I GATATC 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 110, 467
Eco52I CGGCCG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 420
FaiI YATR 8 cut(s) 53, 286, 288, 331, 377, 418, 452, 496
FatI CATG 1 cut(s) 416
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 4 cut(s) 33, 36, 207, 541
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 33, 36, 207, 541
FspBI CTAG 1 cut(s) 341
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 2 cut(s) 201, 339
GluI GCNGC 4 cut(s) 33, 36, 207, 541
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 2 cut(s) 202, 340
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 2 cut(s) 200, 338
HinP1I GCGC 2 cut(s) 200, 338
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 24, 130
HphI GGTGA 2 cut(s) 304, 421
Hpy166II GTNNAC 2 cut(s) 312, 496
Hpy188I TCNGA 2 cut(s) 16, 300
Hpy188III TCNNGA 1 cut(s) 325
Hpy8I GTNNAC 2 cut(s) 312, 496
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 96, 471
HpyCH4V TGCA 2 cut(s) 209, 519
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 197, 206
HpyF3I CTNAG 2 cut(s) 123, 215
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 2 cut(s) 200, 338
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 3 cut(s) 16, 43, 179
LpnPI CCDG 7 cut(s) 83, 126, 201, 248, 334, 378, 411
Lsp1109I GCAGC 2 cut(s) 47, 193
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 3 cut(s) 115, 180, 258
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 511
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 9 cut(s) 101, 118, 160, 213, 325, 351, 382, 414, 422
MseI TTAA 3 cut(s) 98, 275, 437
MwoI GCNNNNNNNGC 3 cut(s) 41, 197, 206
NdeI CATATG 1 cut(s) 286
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 420
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 115, 180
NsbI TGCGCA 1 cut(s) 201
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 4 cut(s) 34, 37, 208, 542
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 110, 467
PstNI CAGNNNCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 3 cut(s) 98, 275, 437
SatI GCNGC 4 cut(s) 33, 36, 207, 541
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 110, 467
SchI GAGTC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 2 cut(s) 110, 467
Sse9I AATT 1 cut(s) 511
SsiI CCGC 3 cut(s) 33, 42, 139
SspMI CTAG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 96, 471
TaqI TCGA 2 cut(s) 90, 536
TasI AATT 1 cut(s) 511
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 3 cut(s) 98, 275, 437
Tru9I TTAA 3 cut(s) 98, 275, 437
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 115, 180
TseI GCWGC 3 cut(s) 35, 206, 540
Tsp45I GTSAC 2 cut(s) 115, 180
TspDTI ATGAA 2 cut(s) 40, 273
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 110, 467
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.