Rorug02G0065600

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011490
Physical Location & Seq
Reverse (-)
5128482 .. 5131799
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0065600.1

Sequence Viewer

Length: 1068 bp
ATGAAGACGAAGACGCCATTGAATCTGAAGAAGCAGCTCAAGCTCTCTGTTCCTGCTCAAGAAACCAACATCACCTCATTCTTGACTGCCAGTGGCACATTTCATGATGGGGGTTTGCTTCTGAACCAGAAAGGGTTGCGGCTTATCTCCGAAGAAAAGGAGCCTTCTGATAGTAAGGAGCTCAATGTTGAATTTTCCTTGGAAGATCTCGAGACTATCAAAGTGATTGGAAAGGGAAGTGGTGGTGTAGTTCAACTTGTTCGCCATAAATGGGTTGGAAAACTATTTGCCTTGAAGGTTATTCAGATGAACATACAAGAGGAAATTCGTAAACAGATTGTGCAGGAGCTAAAAATAAACCAAGCAGCACAATGTCCACATGTGGTAGTTTGCCACCACTCCTTTTATCACAATGGGGCAATTTCTCTTGTGTTAGAATACATGGATCGTGGATCTCTTGCAGATGTGATCAGACAAGTTAAGACAATTCTTGAACCATATCTTGCTGTCGTTTGTAAGCAGGTTTTACAAGGTCTTGTCTACTTGCACAATGAAAGGCATGTAATACATAGAGACATAAAACCATCCAATCTGCTAGTAAACCACAAGGGGGAGGTCAAGATTACTGATTTTGGTGTGAGTGCTTCACTTGCTAGCTCCATGGGTCAGAGGGACACATTCGTTGGTACTTACAATTATATGTCGCCAGAGAGAATTAAAGGGGGTACTTATGACTACAGCAGTGACATTTGGAGTTTAGGCATGGTGATACTTGAGTGTGCTATTGGACGGTTTCCTTACATGCAATCTGAAGATGAACAAAGCTGGCCAAGCTTTTATGAGCTTTTGGAGGCAATTGTTGGAAGTCCACCACCTACTGCTCCATCGGATCAGTTCTCTCCCGAGTTCTGTTCTTTTGTGTCTGCCTGCATACAGAAGGACCCTCAACACAGATCATCATCTTTGGATCTTCTGAGTCACCCATTCATCAAAAAGTTCGAAGACAAGGACATTGATCTTGAGATTCTGGTGGGTAGCTTGGAATCCCCTGTAAATTTTCCCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

355

Amino Acids

39.83

Weight (kDa)

6.19

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 71 - 330 1.5e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 71 - 323 2e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccI GTMKAC 1 cut(s) 540
AciI CCGC 1 cut(s) 139
AclWI GGATC 4 cut(s) 453, 460, 897, 975
AcoI YGGCCR 1 cut(s) 827
AcsI RAATTY 3 cut(s) 191, 324, 1054
AcuI CTGAAG 2 cut(s) 47, 831
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 688, 727
AfiI CCNNNNNNNGG 2 cut(s) 271, 610
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 5 cut(s) 22, 191, 254, 295, 494
AluBI AGCT 9 cut(s) 37, 43, 181, 349, 657, 825, 834, 844, 1038
AluI AGCT 9 cut(s) 37, 43, 181, 349, 657, 825, 834, 844, 1038
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 206, 567
AlwI GGATC 4 cut(s) 453, 460, 897, 975
Ama87I CYCGRG 2 cut(s) 209, 902
AoxI GGCC 1 cut(s) 827
ApeKI GCWGC 2 cut(s) 34, 365
ApoI RAATTY 3 cut(s) 191, 324, 1054
AspS9I GGNCC 1 cut(s) 940
AsuHPI GGTGA 3 cut(s) 64, 778, 971
AsuII TTCGAA 1 cut(s) 999
AsuNHI GCTAGC 1 cut(s) 653
AvaI CYCGRG 2 cut(s) 209, 902
AvaII GGWCC 1 cut(s) 940
BaeI ACNNNNGTAYC 2 cut(s) 761, 794
BalI TGGCCA 1 cut(s) 829
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 3 cut(s) 11, 17, 1008
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 46, 377
BccI CCATC 3 cut(s) 101, 592, 892
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 206, 567
BfaI CTAG 2 cut(s) 596, 654
BfmI CTRYAG 1 cut(s) 736
BfuAI ACCTGC 1 cut(s) 511
BglII AGATCT 1 cut(s) 205
BisI GCNGC 3 cut(s) 35, 140, 366
BlsI GCNGC 3 cut(s) 36, 141, 367
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 2 cut(s) 209, 902
BmgT120I GGNCC 1 cut(s) 940
BmiI GGNNCC 2 cut(s) 162, 942
BmtI GCTAGC 1 cut(s) 657
BpiI GAAGAC 3 cut(s) 11, 17, 1008
Bpu14I TTCGAA 1 cut(s) 999
BpuEI CTTGAG 4 cut(s) 23, 42, 794, 1040
BsaBI GATNNNNATC 1 cut(s) 958
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 198, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 610
Bse1I ACTGG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 958
BseDI CCNNGG 2 cut(s) 198, 660
BseGI GGATG 1 cut(s) 584
BseJI GATNNNNATC 1 cut(s) 958
BseLI CCNNNNNNNGG 2 cut(s) 271, 610
BseMII CTCAG 1 cut(s) 965
BseNI ACTGG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 46, 377
BsgI GTGCAG 1 cut(s) 362
BshFI GGCC 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 2 cut(s) 209, 902
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 271, 610
BsmAI GTCTC 2 cut(s) 206, 567
BsmFI GGGAC 1 cut(s) 686
BsnI GGCC 1 cut(s) 829
BsoBI CYCGRG 2 cut(s) 209, 902
Bsp119I TTCGAA 1 cut(s) 999
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 829
BspCNI CTCAG 1 cut(s) 966
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 162, 942
BspMI ACCTGC 1 cut(s) 511
BspOI GCTAGC 1 cut(s) 657
BspPI GGATC 4 cut(s) 453, 460, 897, 975
BspT104I TTCGAA 1 cut(s) 999
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 198, 660
BssMI GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 198, 660
Bst4CI ACNGT 1 cut(s) 792
BstACI GRCGYC 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 999
BstC8I GCNNGC 3 cut(s) 655, 827, 928
BstDEI CTNAG 1 cut(s) 974
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 1 cut(s) 584
BstKTI GATC 8 cut(s) 208, 448, 455, 471, 892, 956, 970, 1018
BstMAI GTCTC 2 cut(s) 206, 567
BstMBI GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 40, 650, 831
BstNSI RCATGY 3 cut(s) 383, 563, 805
BstSFI CTRYAG 1 cut(s) 736
BstV1I GCAGC 2 cut(s) 46, 377
BstV2I GAAGAC 3 cut(s) 11, 17, 1008
BstX2I RGATCY 3 cut(s) 205, 452, 967
BstYI RGATCY 3 cut(s) 205, 452, 967
BsuRI GGCC 1 cut(s) 829
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 1 cut(s) 584
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 2 cut(s) 97, 748
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 3 cut(s) 655, 827, 928
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 940
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 687, 726
CviAII CATG 7 cut(s) 104, 380, 442, 560, 661, 763, 802
CviQI GTAC 2 cut(s) 687, 726
DdeI CTNAG 1 cut(s) 974
DpnI GATC 8 cut(s) 207, 447, 454, 470, 891, 955, 969, 1017
DpnII GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
EaeI YGGCCR 1 cut(s) 827
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 198, 660
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 47, 831
Eco88I CYCGRG 2 cut(s) 209, 902
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 940
EcoT14I CCWWGG 2 cut(s) 198, 660
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 2 cut(s) 198, 660
FaeI CATG 7 cut(s) 107, 383, 445, 563, 664, 766, 805
FaqI GGGAC 1 cut(s) 686
FatI CATG 7 cut(s) 103, 379, 441, 559, 660, 762, 801
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 3 cut(s) 35, 140, 366
FokI GGATG 1 cut(s) 571
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 35, 140, 366
FspBI CTAG 2 cut(s) 596, 654
GluI GCNGC 3 cut(s) 35, 140, 366
HaeIII GGCC 1 cut(s) 829
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 107, 383, 445, 563, 664, 766, 805
HindIII AAGCTT 1 cut(s) 832
HinfI GANTC 4 cut(s) 22, 976, 1024, 1043
HphI GGTGA 3 cut(s) 64, 778, 971
Hpy166II GTNNAC 5 cut(s) 332, 377, 541, 601, 869
Hpy188III TCNNGA 9 cut(s) 59, 82, 104, 209, 211, 491, 619, 902, 1019
Hpy8I GTNNAC 5 cut(s) 332, 377, 541, 601, 869
HpyAV CCTTC 3 cut(s) 174, 289, 931
HpyCH4III ACNGT 1 cut(s) 792
HpyCH4V TGCA 5 cut(s) 343, 461, 547, 805, 930
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 650, 831
HpyF3I CTNAG 1 cut(s) 974
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 107, 383, 445, 563, 664, 766, 805
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
LmnI GCTCC 5 cut(s) 160, 178, 346, 662, 886
Lsp1109I GCAGC 2 cut(s) 46, 377
MaeI CTAG 2 cut(s) 596, 654
MaeIII GTNAC 2 cut(s) 743, 977
MalI GATC 8 cut(s) 207, 447, 454, 470, 891, 955, 969, 1017
MboI GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
MboII GAAGA 8 cut(s) 16, 22, 40, 164, 215, 824, 962, 1013
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 3 cut(s) 205, 452, 967
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 829
MluCI AATT 8 cut(s) 191, 324, 420, 486, 694, 714, 855, 1054
MluNI TGGCCA 1 cut(s) 829
MlyI GAGTC 1 cut(s) 985
MmeI TCCRAC 2 cut(s) 256, 841
MnlI CCTC 6 cut(s) 85, 313, 607, 663, 844, 954
Mox20I TGGCCA 1 cut(s) 829
MscI TGGCCA 1 cut(s) 829
MseI TTAA 2 cut(s) 480, 717
Msp20I TGGCCA 1 cut(s) 829
MunI CAATTG 1 cut(s) 855
MwoI GCNNNNNNNGC 3 cut(s) 40, 650, 831
NcoI CCATGG 1 cut(s) 660
NdeII GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
NheI GCTAGC 1 cut(s) 653
NlaIII CATG 7 cut(s) 107, 383, 445, 563, 664, 766, 805
NlaIV GGNNCC 2 cut(s) 162, 942
NmuCI GTSAC 2 cut(s) 743, 977
NspI RCATGY 3 cut(s) 383, 563, 805
NspV TTCGAA 1 cut(s) 999
PaeR7I CTCGAG 1 cut(s) 209
PagI TCATGA 1 cut(s) 103
PciI ACATGT 1 cut(s) 379
PfeI GAWTC 3 cut(s) 22, 1024, 1043
PkrI GCNGC 3 cut(s) 36, 141, 367
PleI GAGTC 1 cut(s) 984
PpsI GAGTC 1 cut(s) 984
PpuMI RGGWCCY 1 cut(s) 940
PscI ACATGT 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 940
PspN4I GGNNCC 2 cut(s) 162, 942
PspPI GGNCC 1 cut(s) 940
PspPPI RGGWCCY 1 cut(s) 940
PsuI RGATCY 3 cut(s) 205, 452, 967
RsaI GTAC 2 cut(s) 688, 727
RsaNI GTAC 2 cut(s) 687, 726
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 480, 717
SatI GCNGC 3 cut(s) 35, 140, 366
Sau3AI GATC 8 cut(s) 205, 445, 452, 468, 889, 953, 967, 1015
Sau96I GGNCC 1 cut(s) 940
SchI GAGTC 1 cut(s) 985
SduI GDGCHC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 736
Sfr274I CTCGAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 999
SinI GGWCC 1 cut(s) 940
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 5 cut(s) 38, 57, 209, 773, 1019
SmoI CTYRAG 5 cut(s) 38, 57, 209, 773, 1019
Sse9I AATT 8 cut(s) 191, 324, 420, 486, 694, 714, 855, 1054
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 596, 654
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 2 cut(s) 198, 660
TaaI ACNGT 1 cut(s) 792
TaqI TCGA 2 cut(s) 210, 999
TasI AATT 8 cut(s) 191, 324, 420, 486, 694, 714, 855, 1054
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 3 cut(s) 22, 1024, 1043
Tru1I TTAA 2 cut(s) 480, 717
Tru9I TTAA 2 cut(s) 480, 717
TscAI CASTG 2 cut(s) 97, 748
TseFI GTSAC 2 cut(s) 743, 977
TseI GCWGC 2 cut(s) 34, 365
Tsp45I GTSAC 2 cut(s) 743, 977
TspDTI ATGAA 6 cut(s) 17, 92, 323, 567, 831, 976
TspRI CASTG 2 cut(s) 97, 748
VpaK11BI GGWCC 1 cut(s) 940
XapI RAATTY 3 cut(s) 191, 324, 1054
XceI RCATGY 3 cut(s) 383, 563, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 2 cut(s) 596, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.