MD02G1116800.v1.1

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011490
Physical Location & Seq
Forward (+)
9522378 .. 9531344
8967 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1116800.v1.1.491

Sequence Viewer

Length: 543 bp
ATGGGAGAGGTAATAGAAACCCTACCGGCGTACCGGAGCTCCTTCGCAGCTCCAATTGTATTCATCGTCGTCGTCGCTTTCCAATTCCTCTCTAGGTGGCTGGAACAGTTAAAGAAGGGAGGAGTTAAGAATGCTACGGCAACCCGATTGCGTGGAGAAATTAAAGACCTCCTGAAGGAGGCAAGCTCCTTGTCCCAGCCGTCGACATTTGCGCAAGCTGCGAAACTTCGGAGGATGGCAGCTGCTAAGGAGAAAGAACTTGCAAATTATCAAGAATTACACGGCAAGGAGACAAAACTTTCATATGATTTGTATCAGAGAATTTTGTTCATCTTAAAGGTCTTGACATATATTGTGCTGGTTTGCTGGTTTTGGAGGGTTCCTGTTGCCTCCATATCGCAACAACTTGTGCAACCCTTTGGGAAGCTGATATCATGGAGGGCCGGAGGAGTTGTAAACGAAAATGTTATGGTAGGAATAATTCCTTGGTTGATATTATCTACCAGGGTTAGCAAGTTCGTATGTCGACTTGCCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

10.05

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHD5 PF04420 28 - 146 1.5e-06 CHD5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
AccI GTMKAC 2 cut(s) 203, 526
AcsI RAATTY 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 175, 178
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AluBI AGCT 6 cut(s) 39, 50, 186, 218, 242, 427
AluI AGCT 6 cut(s) 39, 50, 186, 218, 242, 427
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 284
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 4 cut(s) 47, 218, 239, 242
ApoI RAATTY 1 cut(s) 321
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 441
BaeI ACNNNNGTAYC 2 cut(s) 14, 47
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 4 cut(s) 59, 205, 229, 251
BccI CCATC 1 cut(s) 229
BceAI ACGGC 3 cut(s) 153, 184, 298
BciT130I CCWGG 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 2 cut(s) 93, 541
BisI GCNGC 4 cut(s) 48, 219, 240, 243
BlsI GCNGC 4 cut(s) 49, 220, 241, 244
Bme1390I CCNGG 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 485, 504
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 438, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 178
Bse118I RCCGGY 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 485, 504
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 175, 178
BseRI GAGGAG 2 cut(s) 135, 462
BseXI GCAGC 4 cut(s) 59, 205, 229, 251
BseYI CCCAGC 1 cut(s) 195
BshFI GGCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 26, 34, 444
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 175, 178
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 41
BspANI GGCC 1 cut(s) 443
BspLI GGNNCC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 485, 504
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 184, 216
BstDEI CTNAG 1 cut(s) 246
BstENI CCTNNNNNAGG 2 cut(s) 173, 176
BstF5I GGATG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 284
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 505
BstSCI CCNGG 1 cut(s) 503
BstV1I GCAGC 4 cut(s) 59, 205, 229, 251
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 184, 216
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 441
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 435
CviJI RGCY 9 cut(s) 39, 50, 100, 186, 199, 218, 242, 427, 443
CviKI_1 RGCY 9 cut(s) 39, 50, 100, 186, 199, 218, 242, 427, 443
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 485
Eco24I GRGCYC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 432
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 39
EcoNI CCTNNNNNAGG 2 cut(s) 173, 176
EcoRII CCWGG 1 cut(s) 503
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 1 cut(s) 438
FaiI YATR 8 cut(s) 304, 306, 349, 351, 395, 436, 470, 523
FaqI GGGAC 1 cut(s) 178
FatI CATG 1 cut(s) 434
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 2 cut(s) 203, 526
Fnu4HI GCNGC 4 cut(s) 48, 219, 240, 243
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 4 cut(s) 48, 219, 240, 243
FspBI CTAG 2 cut(s) 93, 541
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 1 cut(s) 213
GluI GCNGC 4 cut(s) 48, 219, 240, 243
GsaI CCCAGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 443
HapII CCGG 3 cut(s) 26, 34, 444
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 438
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 2 cut(s) 204, 527
HindII GTYRAC 2 cut(s) 204, 527
HpaII CCGG 3 cut(s) 26, 34, 444
Hpy166II GTNNAC 3 cut(s) 204, 457, 527
Hpy188I TCNGA 2 cut(s) 231, 318
Hpy188III TCNNGA 3 cut(s) 172, 272, 343
Hpy8I GTNNAC 3 cut(s) 204, 457, 527
Hpy99I CGWCG 4 cut(s) 71, 74, 77, 205
HpyAV CCTTC 3 cut(s) 52, 109, 169
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 263, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 1 cut(s) 438
HspAI GCGC 1 cut(s) 212
LmnI GCTCC 4 cut(s) 36, 44, 55, 191
Lsp1109I GCAGC 4 cut(s) 59, 205, 229, 251
MaeI CTAG 2 cut(s) 93, 541
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 7 cut(s) 54, 83, 159, 265, 275, 321, 480
MnlI CCTC 9 cut(s) 98, 113, 172, 179, 225, 369, 400, 432, 440
MseI TTAA 4 cut(s) 110, 126, 162, 335
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 3 cut(s) 26, 34, 444
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeI CATATG 1 cut(s) 304
NlaIII CATG 1 cut(s) 438
NlaIV GGNNCC 1 cut(s) 381
NsbI TGCGCA 1 cut(s) 213
PctI GAATGC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 49, 220, 241, 244
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 441
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SacI GAGCTC 1 cut(s) 41
SalI GTCGAC 2 cut(s) 202, 525
SaqAI TTAA 4 cut(s) 110, 126, 162, 335
SatI GCNGC 4 cut(s) 48, 219, 240, 243
Sau96I GGNCC 1 cut(s) 441
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 1 cut(s) 41
Sse9I AATT 7 cut(s) 54, 83, 159, 265, 275, 321, 480
SspMI CTAG 2 cut(s) 93, 541
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 203, 526
TasI AATT 7 cut(s) 54, 83, 159, 265, 275, 321, 480
Tru1I TTAA 4 cut(s) 110, 126, 162, 335
Tru9I TTAA 4 cut(s) 110, 126, 162, 335
TseI GCWGC 4 cut(s) 47, 218, 239, 242
TspDTI ATGAA 3 cut(s) 52, 291, 319
XagI CCTNNNNNAGG 2 cut(s) 173, 176
XapI RAATTY 1 cut(s) 321
XmiI GTMKAC 2 cut(s) 203, 526
XspI CTAG 2 cut(s) 93, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.