Rmu_sc0002425.1_g000014

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002425.1
OG0011490
Physical Location & Seq
Reverse (-)
56664 .. 58898
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002425.1_g000014.1.cds

Sequence Viewer

Length: 543 bp
atgggcgaggtaatggaaaccctatcggagcaccgaatctctgccgcagctcccgtcgtcttcctgatcgccgtcgctttccagttcgcctctagatggctcgaacagttaaagaagagaggaccaaagactgctgaggaaactcggttgcggagagagatcaaagagcttctgaaagaggcaagctccttgtcacagccatcaacatttgcacaagctgcaaaacttaggaggatggcaactgctaaggagaaagaacttgcaaactatcaagagttacatggcaaggagataaaaggttcatatgatttgtatctgaaagttttgttcatctccaaggtcttgacatatcttgtgctggtttgctggttctggagggttccagttgcctccatatcacaacaacttgttcagccctttgggaaggtgatatcatggagggctggaggagtattaaacggaaatgttatggtgggaataattccttggttgatattgtctacccgggttagcaaatttgtttgtcgactcttcaagttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

180

Amino Acids

20.5

Weight (kDa)

10.05

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 500, 526
AciI CCGC 2 cut(s) 45, 151
AcsI RAATTY 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 535
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AluBI AGCT 4 cut(s) 50, 169, 186, 218
AluI AGCT 4 cut(s) 50, 169, 186, 218
Alw21I GWGCWC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 47, 218
ApoI RAATTY 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 2 cut(s) 505, 506
AsuHPI GGTGA 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 59, 205
BccI CCATC 3 cut(s) 90, 208, 229
BceAI ACGGC 1 cut(s) 56
BcnI CCSGG 2 cut(s) 505, 506
BfaI CTAG 2 cut(s) 93, 541
BisI GCNGC 3 cut(s) 45, 48, 219
BlsI GCNGC 3 cut(s) 46, 49, 220
Bme1390I CCNGG 2 cut(s) 505, 506
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 505, 506
BpiI GAAGAC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 2 cut(s) 394, 465
Bpu10I CCTNAGC 2 cut(s) 135, 246
BpuMI CCSGG 2 cut(s) 505, 506
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 336, 485, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 82, 383
Bse8I GATNNNNATC 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 336, 485, 504
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 82, 383
BseRI GAGGAG 1 cut(s) 462
BseXI GCAGC 2 cut(s) 59, 205
BsiHKAI GWGCWC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 2 cut(s) 66, 159
BspACI CCGC 2 cut(s) 45, 151
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 381
BsrI ACTGG 2 cut(s) 82, 383
BssECI CCNNGG 3 cut(s) 336, 485, 504
BssMI GATC 2 cut(s) 66, 159
BssT1I CCWWGG 2 cut(s) 336, 485
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 2 cut(s) 110, 536
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 3 cut(s) 135, 227, 246
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 2 cut(s) 69, 162
BstMBI GATC 2 cut(s) 66, 159
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 503, 504
BstV1I GCAGC 2 cut(s) 59, 205
BstV2I GAAGAC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 122
Cfr9I CCCGGG 1 cut(s) 504
CviAII CATG 2 cut(s) 281, 435
CviJI RGCY 8 cut(s) 50, 100, 169, 186, 199, 218, 415, 443
CviKI_1 RGCY 8 cut(s) 50, 100, 169, 186, 199, 218, 415, 443
DdeI CTNAG 3 cut(s) 135, 227, 246
DpnI GATC 2 cut(s) 68, 161
DpnII GATC 2 cut(s) 66, 159
Eam1104I CTCTTC 2 cut(s) 110, 536
EarI CTCTTC 2 cut(s) 110, 536
Eco130I CCWWGG 2 cut(s) 336, 485
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 504
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 336, 485
ErhI CCWWGG 2 cut(s) 336, 485
FaeI CATG 2 cut(s) 284, 438
FaiI YATR 7 cut(s) 282, 304, 306, 349, 395, 436, 470
FatI CATG 2 cut(s) 280, 434
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 2 cut(s) 500, 526
Fnu4HI GCNGC 3 cut(s) 45, 48, 219
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 3 cut(s) 45, 48, 219
FspBI CTAG 2 cut(s) 93, 541
GluI GCNGC 3 cut(s) 45, 48, 219
GsuI CTGGAG 2 cut(s) 394, 465
HapII CCGG 1 cut(s) 505
Hin1II CATG 2 cut(s) 284, 438
HincII GTYRAC 1 cut(s) 527
HindII GTYRAC 1 cut(s) 527
HinfI GANTC 2 cut(s) 36, 528
HpaII CCGG 1 cut(s) 505
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 501, 527
Hpy188I TCNGA 3 cut(s) 28, 174, 318
Hpy188III TCNNGA 5 cut(s) 64, 93, 272, 343, 373
Hpy8I GTNNAC 2 cut(s) 501, 527
Hpy99I CGWCG 2 cut(s) 59, 77
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 212, 221, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 135, 227, 246
Hsp92II CATG 2 cut(s) 284, 438
Kzo9I GATC 2 cut(s) 66, 159
LmnI GCTCC 3 cut(s) 28, 55, 191
LpnPI CCDG 8 cut(s) 77, 95, 344, 352, 358, 396, 429, 518
Lsp1109I GCAGC 2 cut(s) 59, 205
MaeI CTAG 2 cut(s) 93, 541
MaeIII GTNAC 2 cut(s) 192, 276
MalI GATC 2 cut(s) 68, 161
MboI GATC 2 cut(s) 66, 159
MboII GAAGA 3 cut(s) 52, 127, 523
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 480, 515
MlyI GAGTC 1 cut(s) 522
MnlI CCTC 9 cut(s) 100, 113, 130, 172, 225, 369, 400, 432, 440
MseI TTAA 2 cut(s) 110, 455
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 2 cut(s) 505, 506
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 2 cut(s) 505, 506
NdeI CATATG 1 cut(s) 304
NdeII GATC 2 cut(s) 66, 159
NlaIII CATG 2 cut(s) 284, 438
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 3 cut(s) 46, 49, 220
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 525
SaqAI TTAA 2 cut(s) 110, 455
SatI GCNGC 3 cut(s) 45, 48, 219
Sau3AI GATC 2 cut(s) 66, 159
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 2 cut(s) 505, 506
SduI GDGCHC 1 cut(s) 33
SetI ASST 8 cut(s) 12, 52, 171, 188, 220, 301, 342, 429
SinI GGWCC 1 cut(s) 122
SmaI CCCGGG 1 cut(s) 506
Sse9I AATT 2 cut(s) 480, 515
SsiI CCGC 2 cut(s) 45, 151
SspMI CTAG 2 cut(s) 93, 541
StyD4I CCNGG 2 cut(s) 503, 504
StyI CCWWGG 2 cut(s) 336, 485
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 102, 526
TasI AATT 2 cut(s) 480, 515
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 2 cut(s) 110, 455
Tru9I TTAA 2 cut(s) 110, 455
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 2 cut(s) 47, 218
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 291, 319
TspGWI ACGGA 1 cut(s) 474
TspMI CCCGGG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 1 cut(s) 92
XmaI CCCGGG 1 cut(s) 504
XmiI GTMKAC 2 cut(s) 500, 526
XspI CTAG 2 cut(s) 93, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.