FvH4_1g10350

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011490
Physical Location & Seq
Forward (+)
5640871 .. 5643820
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10350.t1

Sequence Viewer

Length: 531 bp
ATGGAAACCCTATCAGAGCACCGAATCTCGGCCGCAGCTCCCGCCGTCTTCATAATCGTCGTCGCTTTCCAGTTCCTCTCCAAGTGGCTCGAACAGTCAAAGAAGCGAGGACCAGTGACTGCTGAGGAGACTCGGTTGCGAAGAGAGATCAAACAGCTTTCCAAAGAGGCAAGCTCCTTGTCACAACCAGCAACATTTGCACAAGCTGCAAAGCTTAGGAGGATGGCGACTGCGAAGGAGAAAGAACTTGCTAAGCATCAAGAGTTACAGGGCAAGGAGTTAAAAGGTTCATATAATTTGTATCTGAATGTTTTGTTCATCTCCAAGGTCTTGACATATCTTGTGCTGGTTTGCTGGTTTTGGAGGGTTCCGGTTGCCTCCATATCACAACAACTTGTTCAACCCTTCGGAAAGGTGATATCATGGAGGGCTGGAGGAGTATTAAACGGAAATGTTATGGTGGGAATTATTCCTTGGTTGATATTGTCTACACGGGTTAGCAAATTTGTTTGTCGACTTTTCAAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

10.29

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHD5 PF04420 30 - 160 1.1e-08 CHD5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 488, 514
AciI CCGC 2 cut(s) 33, 42
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 503
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 401, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
AluBI AGCT 5 cut(s) 38, 157, 174, 206, 214
AluI AGCT 5 cut(s) 38, 157, 174, 206, 214
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 35, 206
ApoI RAATTY 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 47, 193
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 527
BisI GCNGC 3 cut(s) 33, 36, 207
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 3 cut(s) 34, 37, 208
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 453
Bpu10I CCTNAGC 2 cut(s) 123, 215
Bpu1102I GCTNAGC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 324, 473
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 70, 113
BseDI CCNNGG 2 cut(s) 324, 473
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 70, 113
BseRI GAGGAG 2 cut(s) 140, 450
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 47, 193
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 2 cut(s) 33, 42
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 70, 113
BssECI CCNNGG 2 cut(s) 324, 473
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 324, 473
Bst4CI ACNGT 2 cut(s) 96, 528
Bst6I CTCTTC 1 cut(s) 136
BstAPI GCANNNNNTGC 2 cut(s) 197, 206
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 123, 215, 252
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 41, 197, 206
BstSFI CTRYAG 1 cut(s) 527
BstV1I GCAGC 2 cut(s) 47, 193
BstV2I GAAGAC 1 cut(s) 40
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 110
CviAII CATG 1 cut(s) 423
CviJI RGCY 8 cut(s) 32, 38, 88, 157, 174, 206, 214, 431
CviKI_1 RGCY 8 cut(s) 32, 38, 88, 157, 174, 206, 214, 431
DdeI CTNAG 3 cut(s) 123, 215, 252
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 324, 473
Eco32I GATATC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 420
EcoT14I CCWWGG 2 cut(s) 324, 473
ErhI CCWWGG 2 cut(s) 324, 473
FaeI CATG 1 cut(s) 426
FaiI YATR 7 cut(s) 53, 292, 294, 337, 383, 424, 458
FatI CATG 1 cut(s) 422
FauI CCCGC 1 cut(s) 49
FblI GTMKAC 2 cut(s) 488, 514
Fnu4HI GCNGC 3 cut(s) 33, 36, 207
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 3 cut(s) 33, 36, 207
GluI GCNGC 3 cut(s) 33, 36, 207
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 1 cut(s) 32
HapII CCGG 1 cut(s) 371
Hin1II CATG 1 cut(s) 426
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 24, 130
HpaII CCGG 1 cut(s) 371
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 2 cut(s) 489, 515
Hpy188I TCNGA 3 cut(s) 16, 306, 410
Hpy188III TCNNGA 2 cut(s) 260, 331
Hpy8I GTNNAC 2 cut(s) 489, 515
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 2 cut(s) 229, 415
HpyCH4III ACNGT 2 cut(s) 96, 528
HpyCH4V TGCA 2 cut(s) 200, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 197, 206
HpyF3I CTNAG 3 cut(s) 123, 215, 252
Hsp92II CATG 1 cut(s) 426
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 43, 179
LpnPI CCDG 8 cut(s) 83, 126, 201, 254, 332, 340, 384, 417
Lsp1109I GCAGC 2 cut(s) 47, 193
LweI GCATC 1 cut(s) 265
MaeIII GTNAC 3 cut(s) 115, 180, 264
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 40, 153
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 295, 465, 503
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 9 cut(s) 86, 101, 118, 160, 213, 357, 388, 420, 428
MseI TTAA 2 cut(s) 281, 443
MspI CCGG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 41, 197, 206
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 426
NlaIV GGNNCC 1 cut(s) 369
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 115, 180
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 3 cut(s) 34, 37, 208
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 110
PstNI CAGNNNCTG 1 cut(s) 119
SalI GTCGAC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 281, 443
SatI GCNGC 3 cut(s) 33, 36, 207
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 21
SetI ASST 8 cut(s) 40, 159, 176, 208, 216, 289, 330, 417
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 110
Sse9I AATT 3 cut(s) 295, 465, 503
SsiI CCGC 2 cut(s) 33, 42
StyI CCWWGG 2 cut(s) 324, 473
TaaI ACNGT 2 cut(s) 96, 528
TaqI TCGA 2 cut(s) 90, 514
TasI AATT 3 cut(s) 295, 465, 503
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 2 cut(s) 281, 443
Tru9I TTAA 2 cut(s) 281, 443
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 115, 180
TseI GCWGC 2 cut(s) 35, 206
Tsp45I GTSAC 2 cut(s) 115, 180
TspDTI ATGAA 3 cut(s) 40, 279, 307
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 503
XmiI GTMKAC 2 cut(s) 488, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.