Rh2DG115900

CHD5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011490
Physical Location & Seq
Forward (+)
9533127 .. 9536370
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG115900.1

Sequence Viewer

Length: 525 bp
ATGGGCGAGGTAATGGAAACCCTATCGGAGCACCGAATCTCTGCCGCAGCTCCCGTCGTCTTCCTGATCGTCGTCGCTTTCCAGTTCGTCTATAGATGGCTCGAACAGTTAAAGAAGAGAGGACCAAAGACTGCTGAGGAAACTCGGTTGCGGAGAGAGATCAAAGAGCTTCTGAAAGAGGCAAGCTCCTTGTCACAGCCATCAACATTTGCACAAGCTGCAAAACTTAAGAGGATGGCAACTTCTAAGGAGAAAGAACTTGCAAACTATCAAGAGTTACATGGCAAGGAGATAAAAGGTTCATATGATTTGTATCTGAAAGTTTTGTTCATCTCCAAGGTCTTGACATATCTTGTGCTGGTTTGCTGGTTTTGGAGGGTTCCAGTTGCCTCCATATCACAACAACTTGTTCAGCCCTTCGGTAATGCATTCTTGTTCCGAATTTACTTATGGAGTCCTGTAGATCTTTCCACCAGTTTGGCTACTCGCAAGATTTTCTTTGTTCTTTTCTGGAAAATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHD5

Protein Analysis

174

Amino Acids

20.26

Weight (kDa)

9.8

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHD5 PF04420 33 - 140 9.3e-07 CHD5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16444
fragaria_vesca FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica Prupe.7G182100_v2.0.a1
pyrus_communis pycom02g09060
rosa_chinensis RchiOBHm_Chr2g0097211
rosa_laevigata RLG00000016712
rosa_multiflora Rmu_sc0002425.1_g000014
rosa_roxburghii Rroxscaffold_2G00144880
rosa_rugosa Rorug02G0065600 Rorug02G0065600
rosa_samantha Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana Rw2G008740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 151
AcsI RAATTY 2 cut(s) 441, 516
AflII CTTAAG 1 cut(s) 227
AluBI AGCT 4 cut(s) 50, 169, 186, 218
AluI AGCT 4 cut(s) 50, 169, 186, 218
Alw21I GWGCWC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 47, 218
ApoI RAATTY 2 cut(s) 441, 516
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 59, 205
BccI CCATC 3 cut(s) 90, 208, 229
BfmI CTRYAG 2 cut(s) 91, 459
BfrI CTTAAG 1 cut(s) 227
BglII AGATCT 1 cut(s) 463
BisI GCNGC 3 cut(s) 45, 48, 219
BlsI GCNGC 3 cut(s) 46, 49, 220
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 336
Bse1I ACTGG 3 cut(s) 82, 383, 474
Bse8I GATNNNNATC 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 312
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 3 cut(s) 82, 383, 474
BseXI GCAGC 2 cut(s) 59, 205
BsiHKAI GWGCWC 1 cut(s) 33
BsmI GAATGC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 3 cut(s) 66, 159, 463
BspACI CCGC 2 cut(s) 45, 151
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 3 cut(s) 82, 383, 474
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 66, 159, 463
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 110
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 135, 246
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 3 cut(s) 69, 162, 466
BstMBI GATC 3 cut(s) 66, 159, 463
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSFI CTRYAG 2 cut(s) 91, 459
BstV1I GCAGC 2 cut(s) 59, 205
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 1 cut(s) 463
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 281
CviJI RGCY 8 cut(s) 50, 100, 169, 186, 199, 218, 415, 482
CviKI_1 RGCY 8 cut(s) 50, 100, 169, 186, 199, 218, 415, 482
DdeI CTNAG 2 cut(s) 135, 246
DpnI GATC 3 cut(s) 68, 161, 465
DpnII GATC 3 cut(s) 66, 159, 463
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 284
FaiI YATR 7 cut(s) 93, 282, 304, 306, 349, 395, 451
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 1 cut(s) 280
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 45, 48, 219
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 3 cut(s) 45, 48, 219
GluI GCNGC 3 cut(s) 45, 48, 219
Hin1II CATG 1 cut(s) 284
HinfI GANTC 2 cut(s) 36, 454
Hpy188I TCNGA 4 cut(s) 28, 174, 318, 440
Hpy188III TCNNGA 4 cut(s) 64, 272, 343, 511
Hpy99I CGWCG 3 cut(s) 59, 74, 77
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 4 cut(s) 212, 221, 263, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 135, 246
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 3 cut(s) 66, 159, 463
LmnI GCTCC 3 cut(s) 28, 55, 191
LpnPI CCDG 8 cut(s) 77, 95, 344, 352, 396, 471, 487, 496
Lsp1109I GCAGC 2 cut(s) 59, 205
MaeIII GTNAC 2 cut(s) 192, 276
MalI GATC 3 cut(s) 68, 161, 465
MboI GATC 3 cut(s) 66, 159, 463
MboII GAAGA 2 cut(s) 52, 127
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 441, 516
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 6 cut(s) 113, 130, 172, 225, 369, 400
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 2 cut(s) 110, 228
MspCI CTTAAG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeI CATATG 1 cut(s) 304
NdeII GATC 3 cut(s) 66, 159, 463
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 430
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 3 cut(s) 46, 49, 220
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 463
SaqAI TTAA 2 cut(s) 110, 228
SatI GCNGC 3 cut(s) 45, 48, 219
Sau3AI GATC 3 cut(s) 66, 159, 463
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 463
SduI GDGCHC 1 cut(s) 33
SetI ASST 7 cut(s) 12, 52, 171, 188, 220, 301, 342
SfcI CTRYAG 2 cut(s) 91, 459
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 441, 516
SsiI CCGC 2 cut(s) 45, 151
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 441, 516
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 2 cut(s) 110, 228
Tru9I TTAA 2 cut(s) 110, 228
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 2 cut(s) 47, 218
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 291, 319
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 441, 516
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.