Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011490

Physical Location & Seq

Genomic Coordinates Reverse (-)

17743072 .. 17745671

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGAGAGGTGGTTGAAACCCTAGAGGGCCATAGAAGGTCGGTGGCAGCTCCTCTCGTCTTCATAGTCGTCGTCGTTTTACAATTTGTCTCCAGGGGGCTACAACAGTTGAAGAAGAGGGGAGTGAAGACTGCTACGGCAAACCGGTTGCGTGGAGAAATTAAGGACCTTTTGAAGGAGGCAAGCTCATTGTCACAGCCTTCAACATTTGCACAAGCTGCAAAGCTAAGGAGGATGGCAGCTGTTAAGGAGAAAGAACTTGCAAATTATCAAGAATTGCATGGCAAGGAGAGAAAACTTTCATATGAGTTGTATCTGAAAGTTCTGTTCATCTCGAAGGTCTTAACGTATCTTGTGCTGATTTGGTGGTTTTGGAGGGTTCCTGTTGCCTCCATATCACAACAACTTGTGCAACCCTTTGGGAAAGTGCTATCATGGAGGGCTGGAGGAATTTTAAATGAAAATGTCATGGTAGGAATTATACCTTGGTTGATATTATCTACTAGGGTTAGCAAATTTGTTTGTCGACTGTTCAAGTTCAAAGAATTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHD5

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

10.37

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16444
fragaria_vesca	FvH4_1g10350 FvH4_1g10370 FvH4_1g10370
malus_domestica	MD02G1116800.v1.1 MD02G1117000.v1.1 MD15G1231800.v1.1
prunus_persica	Prupe.7G182100_v2.0.a1
pyrus_communis	pycom02g09060
rosa_chinensis	RchiOBHm_Chr2g0097211
rosa_laevigata	RLG00000016712
rosa_multiflora	Rmu_sc0002425.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144880
rosa_rugosa	Rorug02G0065600 Rorug02G0065600
rosa_samantha	Rh2AG112100 Rh2BG114500 Rh2DG115900 Rh3AG317500
rosa_wichuraiana	Rw2G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	526
AcsI	RAATTY	2 cut(s)	450, 515
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgeI	ACCGGT	1 cut(s)	144
AgsI	TTSAA	7 cut(s)	17, 112, 175, 204, 535, 541, 550
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	5 cut(s)	50, 186, 218, 226, 242
AluI	AGCT	5 cut(s)	50, 186, 218, 226, 242
Alw26I	GTCTC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	3 cut(s)	47, 218, 239
ApoI	RAATTY	2 cut(s)	450, 515
AsiGI	ACCGGT	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	28, 166
AvaII	GGWCC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	52, 134
BbvI	GCAGC	3 cut(s)	59, 205, 251
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	23, 504
BisI	GCNGC	3 cut(s)	48, 219, 240
BlsI	GCNGC	3 cut(s)	49, 220, 241
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	28, 166
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	94
BpiI	GAAGAC	2 cut(s)	52, 134
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	2 cut(s)	76, 465
Bpu10I	CCTNAGC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	93, 485
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	93, 485
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	59, 205, 251
BshFI	GGCC	1 cut(s)	30
BshTI	ACCGGT	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	93, 485
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	108, 531
Bst6I	CTCTTC	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	59, 205, 251
BstV2I	GAAGAC	2 cut(s)	52, 134
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	28, 166
CspAI	ACCGGT	1 cut(s)	144
CviAII	CATG	3 cut(s)	281, 435, 469
CviJI	RGCY	9 cut(s)	30, 50, 100, 186, 199, 218, 226, 242, 443
CviKI_1	RGCY	9 cut(s)	30, 50, 100, 186, 199, 218, 226, 242, 443
DdeI	CTNAG	1 cut(s)	227
DraI	TTTAAA	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	3 cut(s)	284, 438, 472
FaiI	YATR	9 cut(s)	33, 65, 282, 304, 306, 395, 436, 470, 482
FatI	CATG	3 cut(s)	280, 434, 468
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	48, 219, 240
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	3 cut(s)	48, 219, 240
FspBI	CTAG	2 cut(s)	23, 504
GluI	GCNGC	3 cut(s)	48, 219, 240
GsuI	CTGGAG	2 cut(s)	76, 465
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	3 cut(s)	284, 438, 472
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HpaII	CCGG	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	2 cut(s)	272, 334
Hpy8I	GTNNAC	1 cut(s)	527
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	4 cut(s)	30, 169, 210, 331
HpyCH4III	ACNGT	2 cut(s)	108, 531
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	5 cut(s)	212, 221, 263, 280, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	3 cut(s)	284, 438, 472
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	79, 106, 158, 396, 429
Lsp1109I	GCAGC	3 cut(s)	59, 205, 251
MaeI	CTAG	2 cut(s)	23, 504
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	192
MboII	GAAGA	4 cut(s)	52, 124, 127, 139
MluCI	AATT	8 cut(s)	83, 159, 265, 275, 450, 477, 515, 545
MnlI	CCTC	9 cut(s)	19, 63, 111, 172, 225, 369, 400, 432, 440
MroXI	GAANNNNTTC	1 cut(s)	298
MseI	TTAA	4 cut(s)	162, 246, 344, 455
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeI	CATATG	1 cut(s)	304
NlaIII	CATG	3 cut(s)	284, 438, 472
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	298
PinAI	ACCGGT	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	49, 220, 241
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	28, 166
PspPPI	RGGWCCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	525
SaqAI	TTAA	4 cut(s)	162, 246, 344, 455
SatI	GCNGC	3 cut(s)	48, 219, 240
Sau96I	GGNCC	2 cut(s)	28, 166
ScrFI	CCNGG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	8 cut(s)	83, 159, 265, 275, 450, 477, 515, 545
SspMI	CTAG	2 cut(s)	23, 504
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	108, 531
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	335, 526
TasI	AATT	8 cut(s)	83, 159, 265, 275, 450, 477, 515, 545
Tru1I	TTAA	4 cut(s)	162, 246, 344, 455
Tru9I	TTAA	4 cut(s)	162, 246, 344, 455
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	3 cut(s)	47, 218, 239
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	4 cut(s)	52, 291, 319, 474
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	450, 515
XmiI	GTMKAC	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	2 cut(s)	23, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.