Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010458

Physical Location & Seq

Genomic Coordinates Forward (+)

9476069 .. 9479878

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16845.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTGTAGGCAGAATTGTCGCGCGAAATCCTCACCGGAGGAAGTGATTTCAACTGATGAGAATCTCTTGATATATTGTAAACCTGTTCGACTATATAACATCTTTCACCTTCGCTCTCTAGGCAACCCATCGTTTCTGCCAAGATGCTTGAACTACAAAATTGGGGCAAAGCGCAAAAGAAAGTCAAGATCTACTGGGATGGTAGTTTTCAACTATAAGGATTGTAATAATACATTACAAAGAACTGAAGTTAGGGAGGATTGTTCTTGTCCATTTTGCTCTATGCTATGTGGTAGCTTCAAGGGGCTGCAATTTCATTTGAATTCATCTCATGATTTATTTGAATTTGAGTTCAAGCTTTTGGAAGAATACCAGACAGTTAATGTTTCTGTAAAACTTAATTCCTTCATATTTGAGGAAGAAGGAAGTGATGATGATAAATTTGAGCCCTTCTCTCTCTGCTCGAAACCTCGTAAGCGTAGACAAAGAGGTGGCAGAAATAACACCAGGAGACTTAAAGTATGCTTTTTACCGTTGGATTCACCCAGTTTAGCTAATGGCACAGAAAATGGAATTGCCCTGCTGAATGATGGAAACCGTGGTTTAGGATATCCCGAGGCAACAGAGCTTGCTGGACAATTTGAGATGACTAGCAACATTCCACCAGCCATAGCCCACTCTTCTCTGGACGCTGGTGCTAAAGTTATATTAACAACCGAAGCTGTGGTCCCTGCTACTAAGACAAGAAAGTTATCTGCTGAGCGATCAGAGGCTAGAAGCCACCTACTTCTTCAGAAACGCCAATTCTATCATTCTCACAGAGTCCAGCCAATGGCGCTTGAGCAAGTAATGTCTGATCGGGATAGCGAGGATGAAGTCGATGACGATGTTGCAGATTTTGAAGATCGCCAGATGCTTGATGACTTTGTGGATGTGAATAAAGATGAAAAGCAATTCATGCATCTTTGGAACTCGTTTGTAAGAAAACAAAGGGTTATAGCAGATGGTCATATCTCTTGGGCATGTGAAGTATTTTCAAGATTTTACGAGAAAGAGTTGCACTGTTACTCATCACTCTTCTGGTGTTGGAGATTGTTTTTGATTAAACTATGGAACCATGGACTTGTCGACTCAGCCACCATCAACAACTGCAATACCATCCTCGAGAATTGCCGTAATACCTCAGTCACTAACAACAACAACAACAGTGTGGATCATCCCAGTGACTCAAACACCAACAACAATAACATTGTGGATCATCCGAATGACATAAAAAACAAGAACAATGTTGACAACAAGGACAATAACAGCAGAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

440

Amino Acids

50.62

Weight (kDa)

6.68

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_SUZ12	PF23320	2 - 72	4.5e-15	Polycomb protein SUZ12-like, Zn domain
VEFS-Box	PF09733	199 - 321	1.1e-53	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16845 AT4G16845
fragaria_vesca	FvH4_5g19940 FvH4_5g19940
malus_domestica	MD04G1057300.v1.1 MD06G1050700.v1.1
prunus_persica	Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1
pyrus_communis	pycom04g05090 pycom06g04270
rosa_chinensis	RchiOBHm_Chr7g0204761
rosa_laevigata	RLG00000003435
rosa_multiflora	Rmu_sc0007104.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252840
rosa_rugosa	Rorug07G0085900
rosa_samantha	Rh7AG215900 Rh7BG213000 Rh7CG229100 Rh7DG223500
rosa_wichuraiana	Rw7G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	832
AccI	GTMKAC	2 cut(s)	481, 1128
AccII	CGCG	2 cut(s)	21, 23
AclWI	GGATC	2 cut(s)	1221, 1263
AcsI	RAATTY	3 cut(s)	322, 344, 440
AcuI	CTGAAG	2 cut(s)	267, 776
AfiI	CCNNNNNNNGG	1 cut(s)	832
AgsI	TTSAA	9 cut(s)	51, 151, 211, 301, 322, 344, 355, 902, 1038
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	5 cut(s)	297, 358, 554, 628, 722
AluI	AGCT	5 cut(s)	297, 358, 554, 628, 722
Alw26I	GTCTC	2 cut(s)	505, 1308
AlwI	GGATC	2 cut(s)	1221, 1263
Ama87I	CYCGRG	2 cut(s)	614, 1163
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	3 cut(s)	322, 344, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	711, 743
AspLEI	GCGC	3 cut(s)	23, 174, 838
AspS9I	GGNCC	1 cut(s)	727
AsuHPI	GGTGA	3 cut(s)	24, 98, 534
AvaI	CYCGRG	2 cut(s)	614, 1163
AvaII	GGWCC	1 cut(s)	727
BanII	GRGCYC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	6 cut(s)	136, 193, 584, 998, 1148, 1166
BceAI	ACGGC	1 cut(s)	1158
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	505, 1308
BfaI	CTAG	3 cut(s)	119, 651, 774
BfoI	RGCGCY	1 cut(s)	839
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	1 cut(s)	308
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	508
Bme18I	GGWCC	1 cut(s)	727
BmeT110I	CYCGRG	2 cut(s)	614, 1163
BmgT120I	GGNCC	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	729, 1115
BmrFI	CCNGG	1 cut(s)	508
BmrI	ACTGGG	3 cut(s)	204, 540, 1215
BmsI	GCATC	3 cut(s)	134, 903, 970
BmuI	ACTGGG	3 cut(s)	204, 540, 1215
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	860
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	598, 615, 1117
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	832
Bse1I	ACTGG	3 cut(s)	199, 546, 1221
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	598, 615, 1117
BseGI	GGATG	6 cut(s)	204, 877, 937, 1158, 1216, 1258
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	832
BseMII	CTCAG	3 cut(s)	750, 1146, 1197
BseNI	ACTGG	3 cut(s)	199, 546, 1221
BseXI	GCAGC	1 cut(s)	294
Bsh1236I	CGCG	2 cut(s)	21, 23
BsiHKCI	CYCGRG	2 cut(s)	614, 1163
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	832
BsmAI	GTCTC	2 cut(s)	505, 1308
BsmFI	GGGAC	1 cut(s)	713
BsoBI	CYCGRG	2 cut(s)	614, 1163
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
Bsp1720I	GCTNAGC	1 cut(s)	759
Bsp19I	CCATGG	1 cut(s)	1117
BspCNI	CTCAG	3 cut(s)	751, 1145, 1196
BspFNI	CGCG	2 cut(s)	21, 23
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	729, 1115
BspPI	GGATC	2 cut(s)	1221, 1263
BsrI	ACTGG	3 cut(s)	199, 546, 1221
BssECI	CCNNGG	3 cut(s)	598, 615, 1117
BssMI	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
BssT1I	CCWWGG	1 cut(s)	1117
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	5 cut(s)	379, 534, 599, 1064, 1208
Bst6I	CTCTTC	2 cut(s)	685, 1082
BstAPI	GCANNNNNTGC	1 cut(s)	958
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	4 cut(s)	738, 759, 1132, 1183
BstDSI	CCRYGG	2 cut(s)	598, 1117
BstF5I	GGATG	6 cut(s)	204, 877, 937, 1158, 1216, 1258
BstFNI	CGCG	2 cut(s)	21, 23
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	3 cut(s)	23, 174, 838
BstKTI	GATC	6 cut(s)	191, 767, 859, 907, 1216, 1258
BstMAI	GTCTC	2 cut(s)	505, 1308
BstMBI	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 835, 958
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	1 cut(s)	1026
BstSCI	CCNGG	1 cut(s)	506
BstUI	CGCG	2 cut(s)	21, 23
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BtgI	CCRYGG	2 cut(s)	598, 1117
BtsCI	GGATG	6 cut(s)	204, 877, 937, 1158, 1216, 1258
BtsIMutI	CAGTG	3 cut(s)	1060, 1213, 1228
Cac8I	GCNNGC	1 cut(s)	630
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	3 cut(s)	23, 174, 838
Cfr13I	GGNCC	1 cut(s)	727
CseI	GACGC	1 cut(s)	698
CviAII	CATG	4 cut(s)	332, 958, 1023, 1118
DdeI	CTNAG	4 cut(s)	738, 759, 1132, 1183
DpnI	GATC	6 cut(s)	190, 766, 858, 906, 1215, 1257
DpnII	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
Eam1104I	CTCTTC	2 cut(s)	685, 1082
EarI	CTCTTC	2 cut(s)	685, 1082
Eco130I	CCWWGG	1 cut(s)	1117
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	727
Eco57I	CTGAAG	2 cut(s)	267, 776
Eco88I	CYCGRG	2 cut(s)	614, 1163
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	506
EcoRV	GATATC	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	1117
EcoT22I	ATGCAT	1 cut(s)	963
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	1117
FaeI	CATG	4 cut(s)	335, 961, 1026, 1121
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	331, 957, 1022, 1117
FblI	GTMKAC	2 cut(s)	481, 1128
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	6 cut(s)	211, 884, 944, 1145, 1203, 1245
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	3 cut(s)	119, 651, 774
GlaI	GCGC	3 cut(s)	22, 173, 837
GluI	GCNGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	839
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	3 cut(s)	23, 174, 838
Hin1II	CATG	4 cut(s)	335, 961, 1026, 1121
Hin6I	GCGC	3 cut(s)	21, 172, 836
HinP1I	GCGC	3 cut(s)	21, 172, 836
HincII	GTYRAC	2 cut(s)	1129, 1291
HindII	GTYRAC	2 cut(s)	1129, 1291
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	5 cut(s)	61, 539, 822, 1130, 1226
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	24, 98, 534
Hpy166II	GTNNAC	4 cut(s)	80, 482, 1129, 1291
Hpy188I	TCNGA	4 cut(s)	769, 795, 856, 1263
Hpy188III	TCNNGA	8 cut(s)	67, 186, 332, 614, 686, 860, 1038, 1165
Hpy8I	GTNNAC	4 cut(s)	80, 482, 1129, 1291
HpyAV	CCTTC	4 cut(s)	119, 415, 416, 460
HpyCH4III	ACNGT	5 cut(s)	379, 534, 599, 1064, 1208
HpyCH4V	TGCA	5 cut(s)	310, 893, 961, 1060, 1152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 835, 958
HpyF3I	CTNAG	4 cut(s)	738, 759, 1132, 1183
Hsp92II	CATG	4 cut(s)	335, 961, 1026, 1121
HspAI	GCGC	3 cut(s)	21, 172, 836
Kzo9I	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	3 cut(s)	134, 903, 970
MaeI	CTAG	3 cut(s)	119, 651, 774
MaeIII	GTNAC	3 cut(s)	1064, 1186, 1223
MalI	GATC	6 cut(s)	190, 766, 858, 906, 1215, 1257
MboI	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
MboII	GAAGA	6 cut(s)	377, 431, 672, 782, 914, 1069
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	450
MlyI	GAGTC	3 cut(s)	831, 1124, 1220
MmeI	TCCRAC	2 cut(s)	516, 1067
Mph1103I	ATGCAT	1 cut(s)	963
MseI	TTAA	5 cut(s)	381, 399, 516, 710, 1104
MslI	CAYNNNNRTG	2 cut(s)	1221, 1263
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	508
MvnI	CGCG	2 cut(s)	21, 23
MwoI	GCNNNNNNNGC	3 cut(s)	120, 835, 958
NcoI	CCATGG	1 cut(s)	1117
NdeII	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
NlaIII	CATG	4 cut(s)	335, 961, 1026, 1121
NlaIV	GGNNCC	2 cut(s)	729, 1115
NmuCI	GTSAC	2 cut(s)	1186, 1223
NsiI	ATGCAT	1 cut(s)	963
NspI	RCATGY	1 cut(s)	1026
PaeR7I	CTCGAG	1 cut(s)	1163
PagI	TCATGA	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	61, 539
PflMI	CCANNNNNTGG	1 cut(s)	832
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	3 cut(s)	830, 1124, 1220
PpsI	GAGTC	3 cut(s)	830, 1124, 1220
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	729, 1115
PspPI	GGNCC	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	188
RseI	CAYNNNNRTG	2 cut(s)	1221, 1263
SalI	GTCGAC	1 cut(s)	1127
SaqAI	TTAA	5 cut(s)	381, 399, 516, 710, 1104
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	6 cut(s)	188, 764, 856, 904, 1213, 1255
Sau96I	GGNCC	1 cut(s)	727
SchI	GAGTC	3 cut(s)	831, 1124, 1220
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	3 cut(s)	134, 903, 970
Sfr274I	CTCGAG	1 cut(s)	1163
SinI	GGWCC	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	1163
SmiMI	CAYNNNNRTG	2 cut(s)	1221, 1263
SmlI	CTYRAG	2 cut(s)	839, 1163
SmoI	CTYRAG	2 cut(s)	839, 1163
SspMI	CTAG	3 cut(s)	119, 651, 774
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	1117
TaaI	ACNGT	5 cut(s)	379, 534, 599, 1064, 1208
TaqI	TCGA	5 cut(s)	88, 464, 879, 1128, 1164
TfiI	GAWTC	2 cut(s)	61, 539
Tru1I	TTAA	5 cut(s)	381, 399, 516, 710, 1104
Tru9I	TTAA	5 cut(s)	381, 399, 516, 710, 1104
TscAI	CASTG	3 cut(s)	1067, 1213, 1228
TseFI	GTSAC	2 cut(s)	1186, 1223
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	2 cut(s)	1186, 1223
TspDTI	ATGAA	6 cut(s)	305, 315, 397, 888, 946, 960
TspRI	CASTG	3 cut(s)	1067, 1213, 1228
Van91I	CCANNNNNTGG	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	727
XapI	RAATTY	3 cut(s)	322, 344, 440
XceI	RCATGY	1 cut(s)	1026
XhoI	CTCGAG	1 cut(s)	1163
XmiI	GTMKAC	2 cut(s)	481, 1128
XspI	CTAG	3 cut(s)	119, 651, 774
Zsp2I	ATGCAT	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.