Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010458

Physical Location & Seq

Genomic Coordinates Reverse (-)

18130698 .. 18139148

Gene Structure 8451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG213000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTGCCGTCATGATTTGTCAGCAGGCGAGGCGGTTTCAATCGAAGAGAATCTCTTGATATATTGCAAGCCGGTTGAGCTCTACAATATTCTTCGCCCTCGTGCTTTGCATAATCCTTTATTTCTTCGTAGATGTTTGCGATACAAAATCCAAGCAAAGCATAAACGGAGGTTCAATGCTGGGACTGTAATATTCAACTATAAGGACTACTGCAACACTTTACAAAAAACTGAAGTCACCGAAGACTTCTCATGTCCCTTTTGCTTGATGCAATGTGCAAGCTTTAAGGGTCTGCGGTATCACTTGTGCTCGTCGCATGACTTATTCAACTTTGAGTTTTGGGTAACTGGAGAGTATCGGGCGGTGAATGTTTCTGTTAAAACTGATACATTGAGATCTGAGACTGTAGCAGAAGGAGCAGGCCCACAACTTCAAACATTCTTCTTCTGTTCAAGGCCAAGAAAACGCAGGTCACTGGACTGTGGTCAAAATATAAAGCATGTTAATGTCCAATTCTTGGAGTTGGACTCAAGTATACTAATGAGCGAAGGTGCACAGAAAGGACTTTTGGTGAATGGTAATGGTGAGAAGGCTCCCGATCTGCTTCCTAGTGGGGTAGATATCCAGAATGGAAGGCAAGGACAAGAAAACAATGGTCCTCATAATCCTAGACCGATGGAATCTATAAAATGTGTTACATCAAGTTCCAGTGCTCCTGGTATTACAATTGCTGTTGCTCAACCTTCTCTGGACCCTAATTGTGTTAAATTGCAATCTGGAAGTGATTGTGCACCCCCTGCTAAAATGAGGAAGTTAAATGGAGAGCGATCAGACCCTAAAAACAGCCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGCCCATGGAGTTGGAGCAAGTATTATCAGATCTGGATAGCGAAGATGAAGCTGATGATGACGTTGCAGATCTTGAAGATCGGAGGGTAAGTTTGATGATTCTTCTAGTTAACTTTTGCCTATGTTACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

341

Amino Acids

38.58

Weight (kDa)

7.49

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_SUZ12	PF23320	61 - 129	3.6e-31	Polycomb protein SUZ12-like, Zn domain
VEFS-Box	PF09733	281 - 326	4.8e-14	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16845 AT4G16845
fragaria_vesca	FvH4_5g19940 FvH4_5g19940
malus_domestica	MD04G1057300.v1.1 MD06G1050700.v1.1
prunus_persica	Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1
pyrus_communis	pycom04g05090 pycom06g04270
rosa_chinensis	RchiOBHm_Chr7g0204761
rosa_laevigata	RLG00000003435
rosa_multiflora	Rmu_sc0007104.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252840
rosa_rugosa	Rorug07G0085900
rosa_samantha	Rh7AG215900 Rh7BG213000 Rh7CG229100 Rh7DG223500
rosa_wichuraiana	Rw7G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB7I	CCANNNNNTGG	2 cut(s)	517, 898
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	3 cut(s)	32, 295, 362
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	517, 898
AgsI	TTSAA	7 cut(s)	39, 175, 196, 328, 434, 453, 968
AjnI	CCWGG	1 cut(s)	715
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	3 cut(s)	79, 282, 944
AluI	AGCT	3 cut(s)	79, 282, 944
Alw21I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	2 cut(s)	552, 789
AoxI	GGCC	2 cut(s)	421, 455
ApaLI	GTGCAC	2 cut(s)	552, 789
AspS9I	GGNCC	3 cut(s)	422, 656, 751
AsuHPI	GGTGA	4 cut(s)	229, 376, 583, 596
AvaII	GGWCC	2 cut(s)	656, 751
BaeGI	GKGCMC	2 cut(s)	556, 793
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	3 cut(s)	609, 669, 998
BfmI	CTRYAG	2 cut(s)	405, 857
BfuAI	ACCTGC	1 cut(s)	459
BglII	AGATCT	3 cut(s)	395, 922, 961
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	2 cut(s)	656, 751
BmgT120I	GGNCC	3 cut(s)	422, 656, 751
BmiI	GGNNCC	2 cut(s)	594, 753
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	258
BoxI	GACNNNNGTC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	897
BsaXI	ACNNNNNCTCC	2 cut(s)	967, 997
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 898
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	352, 480, 708
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	897
BseLI	CCNNNNNNNGG	2 cut(s)	517, 898
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	3 cut(s)	352, 480, 708
BseSI	GKGCMC	2 cut(s)	556, 793
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	423, 457
BsiHKAI	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	196, 240
BslI	CCNNNNNNNGG	2 cut(s)	517, 898
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	196, 240
BsnI	GGCC	2 cut(s)	423, 457
Bsp1286I	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
Bsp143I	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	32, 295, 362
BspANI	GGCC	2 cut(s)	423, 457
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	594, 753
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	352, 480, 708
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
BssNAI	GTATAC	1 cut(s)	536
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	897
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	4 cut(s)	187, 406, 482, 870
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	4 cut(s)	25, 68, 280, 421
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	897
BstKTI	GATC	6 cut(s)	398, 601, 830, 925, 964, 973
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 76, 416, 797
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	503
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	2 cut(s)	405, 857
BstSLI	GKGCMC	2 cut(s)	556, 793
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	3 cut(s)	395, 922, 961
BstXI	CCANNNNNNTGG	1 cut(s)	904
BstYI	RGATCY	3 cut(s)	395, 922, 961
BstZ17I	GTATAC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	423, 457
BtgI	CCRYGG	1 cut(s)	897
BtsIMutI	CAGTG	2 cut(s)	473, 715
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	4 cut(s)	25, 68, 280, 421
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	422, 656, 751
CviAII	CATG	5 cut(s)	11, 252, 317, 500, 898
CviJI	RGCY	9 cut(s)	70, 79, 282, 423, 457, 593, 846, 895, 944
CviKI_1	RGCY	9 cut(s)	70, 79, 282, 423, 457, 593, 846, 895, 944
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	6 cut(s)	397, 600, 829, 924, 963, 972
DpnII	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	656, 751
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	5 cut(s)	14, 255, 320, 503, 901
FaqI	GGGAC	2 cut(s)	196, 240
FatI	CATG	5 cut(s)	10, 251, 316, 499, 897
FblI	GTMKAC	1 cut(s)	535
FriOI	GRGCYC	1 cut(s)	81
FspBI	CTAG	3 cut(s)	609, 669, 998
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	423, 457
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	5 cut(s)	14, 255, 320, 503, 901
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	49, 527, 680, 888, 991
HpaI	GTTAAC	1 cut(s)	1003
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	4 cut(s)	229, 376, 583, 596
Hpy166II	GTNNAC	4 cut(s)	536, 554, 791, 1003
Hpy188I	TCNGA	4 cut(s)	400, 832, 922, 975
Hpy188III	TCNNGA	8 cut(s)	11, 55, 596, 625, 749, 777, 926, 965
Hpy8I	GTNNAC	4 cut(s)	536, 554, 791, 1003
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	407, 542, 583, 627, 753
HpyCH4III	ACNGT	4 cut(s)	187, 406, 482, 870
HpyCH4IV	ACGT	1 cut(s)	954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 76, 416, 797
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	954
Hsp92II	CATG	5 cut(s)	14, 255, 320, 503, 901
KspAI	GTTAAC	1 cut(s)	1003
Kzo9I	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
LmnI	GCTCC	5 cut(s)	416, 598, 718, 858, 907
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	3 cut(s)	609, 669, 998
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	5 cut(s)	235, 343, 471, 694, 1016
MalI	GATC	6 cut(s)	397, 600, 829, 924, 963, 972
MboI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
MboII	GAAGA	9 cut(s)	56, 83, 116, 254, 433, 436, 947, 980, 986
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	3 cut(s)	395, 922, 961
MhlI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
MluCI	AATT	4 cut(s)	512, 726, 757, 767
MlyI	GAGTC	2 cut(s)	521, 897
MmeI	TCCRAC	2 cut(s)	504, 885
MnlI	CCTC	6 cut(s)	22, 108, 162, 669, 801, 969
MseI	TTAA	6 cut(s)	285, 378, 504, 765, 815, 1002
MslI	CAYNNNNRTG	1 cut(s)	504
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	717
MunI	CAATTG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	4 cut(s)	29, 76, 416, 797
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
NlaIII	CATG	5 cut(s)	14, 255, 320, 503, 901
NlaIV	GGNNCC	2 cut(s)	594, 753
NmuCI	GTSAC	2 cut(s)	235, 471
NspI	RCATGY	1 cut(s)	503
PagI	TCATGA	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	49, 680, 991
PflMI	CCANNNNNTGG	2 cut(s)	517, 898
PleI	GAGTC	2 cut(s)	521, 896
PpsI	GAGTC	2 cut(s)	521, 896
PshAI	GACNNNNGTC	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	715
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	594, 753
PspPI	GGNCC	3 cut(s)	422, 656, 751
PstI	CTGCAG	1 cut(s)	861
PsuI	RGATCY	3 cut(s)	395, 922, 961
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	6 cut(s)	285, 378, 504, 765, 815, 1002
Sau3AI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Sau96I	GGNCC	3 cut(s)	422, 656, 751
SchI	GAGTC	2 cut(s)	521, 897
ScrFI	CCNGG	1 cut(s)	717
SduI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
SetI	ASST	9 cut(s)	81, 173, 284, 473, 553, 745, 946, 957, 1023
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	2 cut(s)	405, 857
SinI	GGWCC	2 cut(s)	656, 751
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	4 cut(s)	512, 726, 757, 767
SsiI	CCGC	3 cut(s)	32, 295, 362
SspI	AATATT	2 cut(s)	88, 192
SspMI	CTAG	3 cut(s)	609, 669, 998
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	4 cut(s)	187, 406, 482, 870
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	42
TaqII	GACCGA	1 cut(s)	688
TasI	AATT	4 cut(s)	512, 726, 757, 767
TfiI	GAWTC	3 cut(s)	49, 680, 991
Tru1I	TTAA	6 cut(s)	285, 378, 504, 765, 815, 1002
Tru9I	TTAA	6 cut(s)	285, 378, 504, 765, 815, 1002
TscAI	CASTG	2 cut(s)	480, 715
TseFI	GTSAC	2 cut(s)	235, 471
Tsp45I	GTSAC	2 cut(s)	235, 471
TspDTI	ATGAA	1 cut(s)	954
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	480, 715
Van91I	CCANNNNNTGG	2 cut(s)	517, 898
VneI	GTGCAC	2 cut(s)	552, 789
VpaK11BI	GGWCC	2 cut(s)	656, 751
XceI	RCATGY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	3 cut(s)	609, 669, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.