Rh7DG223500

Polycomb group protein EMBRYONIC FLOWER

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
21758628 .. 21766129
7502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG223500.1

Sequence Viewer

Length: 1248 bp
ATGTGCCGTCATGATTTGTCAGCAGGCGAGGCGGTTTCAATCGAAGAGAATCTCTTGATATATTGCAAGCCGGTTGAGCTCTACAATATTCTTCGCCCTCGCGCTTTGCATAATCCTTTATTTCTTCGTAGATGTTTGCGATACGAAATCCAAGCAAAGCATAAGCAGAGGTTCAATGCTGGGACTGTAATATTCAACTATAAGGACTACTGCAACAATTTACAAAAAACTGAAGTCACCGAAGACTTCTCATGCCCCTTTTGCTTGATGCAATGTGCAAGCTTTAAGGGTCTGCGGTATCACTTGTGCTCGTCACATGACTTATTCAACTTTGAGTTTTGGGTAACTGGAGAGTATCGGGCAGTGAATGTTTCTGTTAAAAGTGATGCATTGAGATCTGAGACTGTAGCAGAAGGAGCAGGTCCACAACTTCAAACATTCTTCTTCTGTTCAAGGCCAAGAAAACGCAGGTCACTGGACTGTGGTCAAAATATAAAGCATGTTAATGTACAATTCTTGGAGTTGGACTCAAGTATACTAACGAGCGAAGGTGCACAGAAAGGACTTTTGGTGAATGGTAATGGTGAGAAGGCTCCCAATCTGCTTCCTAGTGGGGTAGATATCCAGAATGGAAGGCAAGGACAAGAAAACAATGGTCCTCATAATCCTAGACCGATGGAATCTATAAAATGTGTTACATCAAGTTCCAGTGCTCCTGGTATTACAATTGCTGTTGCTCAACCTTCTCTGGACCCTAATTGTGTTAAATTGCAATCTGGAAGTGATTGTGCACCCCCTGCTAAAATGAGGAAGTTAAATGGAGAGCGATCAGACCCCAAAAACAGCCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGCCCATGGAGTTGGAGCAAGTATTATCAGATCTGGATAGTGAAGATGAAGCTGATGATGACGTTGCAGATCTTGAAGATCGGAGGATGCTTGATGATTTTGTAGATGTTACCAAAGATGAAAAGCAGCTGATGCACCTTTGGAACTCGTTTGTGCGGAGACAAAGTGTGCTGGCAGATGCTCATGTTCCCTGGGCATGTGAGGCATTTTCAAGACTTCATGGACAGGAGCTAGTCTCCTCTCCAGCTCTTTTCTGGTGTTGGAGATTATTCATGGTCAAACTTTGGAATCACGGTCTTCTTGATGCCTGCACAATCAATAGTTGCAATGTCATTCTCAATGGATACAAGAACTAG

Protein Analysis

415

Amino Acids

47.13

Weight (kDa)

6.67

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_SUZ12 PF23320 61 - 128 1.6e-30 Polycomb protein SUZ12-like, Zn domain
VEFS-Box PF09733 281 - 403 5.1e-55 VEFS-Box of polycomb protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 410, 459
AccB7I CCANNNNNTGG 1 cut(s) 898
AccI GTMKAC 1 cut(s) 535
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 32, 295, 1048
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 898
AgsI TTSAA 8 cut(s) 39, 175, 196, 328, 434, 453, 968, 1104
AjnI CCWGG 2 cut(s) 715, 1082
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 6 cut(s) 79, 282, 944, 1021, 1123, 1139
AluI AGCT 6 cut(s) 79, 282, 944, 1021, 1123, 1139
Alw21I GWGCWC 5 cut(s) 81, 311, 556, 715, 793
Alw26I GTCTC 3 cut(s) 395, 1045, 1132
Alw44I GTGCAC 2 cut(s) 552, 789
AoxI GGCC 1 cut(s) 455
ApaLI GTGCAC 2 cut(s) 552, 789
ApeKI GCWGC 1 cut(s) 1018
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 3 cut(s) 422, 656, 751
AsuHPI GGTGA 3 cut(s) 229, 583, 596
AvaII GGWCC 3 cut(s) 422, 656, 751
BaeGI GKGCMC 2 cut(s) 556, 793
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 2 cut(s) 249, 1181
Bbv12I GWGCWC 5 cut(s) 81, 311, 556, 715, 793
BbvI GCAGC 1 cut(s) 1030
BccI CCATC 1 cut(s) 670
BceAI ACGGC 1 cut(s) 831
BciT130I CCWGG 2 cut(s) 717, 1084
BciVI GTATCC 1 cut(s) 1229
BcoDI GTCTC 3 cut(s) 395, 1045, 1132
BfaI CTAG 4 cut(s) 609, 669, 1124, 1246
BfmI CTRYAG 2 cut(s) 405, 857
BfuAI ACCTGC 2 cut(s) 410, 459
BfuI GTATCC 1 cut(s) 1229
BglII AGATCT 3 cut(s) 395, 922, 961
BisI GCNGC 1 cut(s) 1019
BlsI GCNGC 1 cut(s) 1020
Bme1390I CCNGG 2 cut(s) 717, 1084
Bme18I GGWCC 3 cut(s) 422, 656, 751
BmgT120I GGNCC 3 cut(s) 422, 656, 751
BmiI GGNNCC 2 cut(s) 594, 753
BmrFI CCNGG 2 cut(s) 717, 1084
BmsI GCATC 6 cut(s) 258, 376, 969, 1014, 1060, 1186
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 249, 1181
BplI GAGNNNNNCTC 4 cut(s) 512, 544, 1112, 1144
BpmI CTGGAG 2 cut(s) 369, 1119
BpuEI CTTGAG 1 cut(s) 514
BsaJI CCNNGG 3 cut(s) 897, 1082, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 1 cut(s) 898
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 3 cut(s) 352, 480, 708
Bse3DI GCAATG 2 cut(s) 278, 1225
BseBI CCWGG 2 cut(s) 717, 1084
BseDI CCNNGG 3 cut(s) 897, 1082, 1083
BseGI GGATG 1 cut(s) 984
BseLI CCNNNNNNNGG 1 cut(s) 898
BseMI GCAATG 2 cut(s) 278, 1225
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 3 cut(s) 352, 480, 708
BseRI GAGGAG 1 cut(s) 1120
BseSI GKGCMC 2 cut(s) 556, 793
BseXI GCAGC 1 cut(s) 1030
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 1186
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 457
BsiHKAI GWGCWC 5 cut(s) 81, 311, 556, 715, 793
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 898
BsmAI GTCTC 3 cut(s) 395, 1045, 1132
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 5 cut(s) 81, 311, 556, 715, 793
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 5 cut(s) 395, 827, 922, 961, 970
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 3 cut(s) 32, 295, 1048
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 594, 753
BspMAI CTGCAG 1 cut(s) 861
BspMI ACCTGC 2 cut(s) 410, 459
BsrDI GCAATG 2 cut(s) 278, 1225
BsrFI RCCGGY 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 3 cut(s) 352, 480, 708
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 897, 1082, 1083
BssMI GATC 5 cut(s) 395, 827, 922, 961, 970
BssNAI GTATAC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 897
Bst1107I GTATAC 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 717, 1084
Bst4CI ACNGT 5 cut(s) 187, 406, 482, 870, 1187
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 2 cut(s) 797, 1024
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 5 cut(s) 25, 68, 280, 1065, 1201
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 1 cut(s) 984
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 5 cut(s) 398, 830, 925, 964, 973
BstMAI GTCTC 3 cut(s) 395, 1045, 1132
BstMBI GATC 5 cut(s) 395, 827, 922, 961, 970
BstMWI GCNNNNNNNGC 7 cut(s) 29, 76, 261, 416, 797, 1024, 1094
BstNI CCWGG 2 cut(s) 717, 1084
BstNSI RCATGY 2 cut(s) 503, 1092
BstPAI GACNNNNGTC 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 715, 1082
BstSFI CTRYAG 2 cut(s) 405, 857
BstSLI GKGCMC 2 cut(s) 556, 793
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 1030
BstV2I GAAGAC 2 cut(s) 249, 1181
BstX2I RGATCY 3 cut(s) 395, 922, 961
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 3 cut(s) 395, 922, 961
BstZ17I GTATAC 1 cut(s) 536
BsuI GTATCC 1 cut(s) 1229
BsuRI GGCC 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 1 cut(s) 984
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 369, 473, 715
BveI ACCTGC 2 cut(s) 410, 459
Cac8I GCNNGC 5 cut(s) 25, 68, 280, 1065, 1201
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 422, 656, 751
Csp6I GTAC 1 cut(s) 509
CviAII CATG 9 cut(s) 11, 252, 317, 500, 898, 1076, 1089, 1112, 1165
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 399
DpnI GATC 5 cut(s) 397, 829, 924, 963, 972
DpnII GATC 5 cut(s) 395, 827, 922, 961, 970
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 3 cut(s) 422, 656, 751
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 715, 1082
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 897
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 9 cut(s) 14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
FaqI GGGAC 1 cut(s) 196
FatI CATG 9 cut(s) 10, 251, 316, 499, 897, 1075, 1088, 1111, 1164
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 1019
FokI GGATG 1 cut(s) 991
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 1019
FspBI CTAG 4 cut(s) 609, 669, 1124, 1246
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 1019
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 2 cut(s) 369, 1119
HaeIII GGCC 1 cut(s) 457
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 104
Hin1II CATG 9 cut(s) 14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 5 cut(s) 49, 527, 680, 888, 1180
HpaII CCGG 1 cut(s) 71
HphI GGTGA 3 cut(s) 229, 583, 596
Hpy166II GTNNAC 4 cut(s) 425, 536, 554, 791
Hpy188I TCNGA 4 cut(s) 400, 832, 922, 975
Hpy188III TCNNGA 9 cut(s) 11, 55, 625, 749, 777, 926, 965, 1104, 1193
Hpy8I GTNNAC 4 cut(s) 425, 536, 554, 791
HpyAV CCTTC 5 cut(s) 407, 542, 583, 627, 753
HpyCH4III ACNGT 5 cut(s) 187, 406, 482, 870, 1187
HpyCH4IV ACGT 1 cut(s) 954
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 76, 261, 416, 797, 1024, 1094
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 954
Hsp92II CATG 9 cut(s) 14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 5 cut(s) 395, 827, 922, 961, 970
LmnI GCTCC 6 cut(s) 416, 598, 718, 858, 907, 1120
Lsp1109I GCAGC 1 cut(s) 1030
LweI GCATC 6 cut(s) 258, 376, 969, 1014, 1060, 1186
MaeI CTAG 4 cut(s) 609, 669, 1124, 1246
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 6 cut(s) 235, 312, 343, 471, 694, 1000
MalI GATC 5 cut(s) 397, 829, 924, 963, 972
MboI GATC 5 cut(s) 395, 827, 922, 961, 970
MboII GAAGA 9 cut(s) 56, 83, 116, 254, 433, 436, 947, 980, 1181
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 3 cut(s) 395, 922, 961
MhlI GDGCHC 5 cut(s) 81, 311, 556, 715, 793
MluCI AATT 5 cut(s) 217, 512, 726, 757, 767
MlyI GAGTC 2 cut(s) 521, 897
MmeI TCCRAC 3 cut(s) 504, 885, 1133
MnlI CCTC 8 cut(s) 22, 108, 162, 669, 801, 969, 1087, 1141
Mph1103I ATGCAT 1 cut(s) 391
MseI TTAA 5 cut(s) 285, 378, 504, 765, 815
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 1021
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 717, 1084
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 2 cut(s) 717, 1084
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 7 cut(s) 29, 76, 261, 416, 797, 1024, 1094
NcoI CCATGG 1 cut(s) 897
NdeII GATC 5 cut(s) 395, 827, 922, 961, 970
NlaIII CATG 9 cut(s) 14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
NlaIV GGNNCC 2 cut(s) 594, 753
NmuCI GTSAC 3 cut(s) 235, 312, 471
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 2 cut(s) 503, 1092
PagI TCATGA 1 cut(s) 10
PasI CCCWGGG 1 cut(s) 1083
PfeI GAWTC 3 cut(s) 49, 680, 1180
PflMI CCANNNNNTGG 1 cut(s) 898
PkrI GCNGC 1 cut(s) 1020
PleI GAGTC 2 cut(s) 521, 896
PpsI GAGTC 2 cut(s) 521, 896
PshAI GACNNNNGTC 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 715, 1082
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 2 cut(s) 715, 1082
PspN4I GGNNCC 2 cut(s) 594, 753
PspPI GGNCC 3 cut(s) 422, 656, 751
PstI CTGCAG 1 cut(s) 861
PsuI RGATCY 3 cut(s) 395, 922, 961
PvuII CAGCTG 1 cut(s) 1021
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 5 cut(s) 285, 378, 504, 765, 815
SatI GCNGC 1 cut(s) 1019
Sau3AI GATC 5 cut(s) 395, 827, 922, 961, 970
Sau96I GGNCC 3 cut(s) 422, 656, 751
SchI GAGTC 2 cut(s) 521, 897
ScrFI CCNGG 2 cut(s) 717, 1084
SduI GDGCHC 5 cut(s) 81, 311, 556, 715, 793
SfaNI GCATC 6 cut(s) 258, 376, 969, 1014, 1060, 1186
SfcI CTRYAG 2 cut(s) 405, 857
SinI GGWCC 3 cut(s) 422, 656, 751
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 5 cut(s) 217, 512, 726, 757, 767
SsiI CCGC 3 cut(s) 32, 295, 1048
SspI AATATT 2 cut(s) 88, 192
SspMI CTAG 4 cut(s) 609, 669, 1124, 1246
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 715, 1082
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 5 cut(s) 187, 406, 482, 870, 1187
TaiI ACGT 1 cut(s) 957
TaqI TCGA 1 cut(s) 42
TaqII GACCGA 1 cut(s) 688
TasI AATT 5 cut(s) 217, 512, 726, 757, 767
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 3 cut(s) 49, 680, 1180
Tru1I TTAA 5 cut(s) 285, 378, 504, 765, 815
Tru9I TTAA 5 cut(s) 285, 378, 504, 765, 815
TscAI CASTG 3 cut(s) 369, 480, 715
TseFI GTSAC 3 cut(s) 235, 312, 471
TseI GCWGC 1 cut(s) 1018
Tsp45I GTSAC 3 cut(s) 235, 312, 471
TspDTI ATGAA 4 cut(s) 954, 1026, 1100, 1153
TspRI CASTG 3 cut(s) 369, 480, 715
Van91I CCANNNNNTGG 1 cut(s) 898
VneI GTGCAC 2 cut(s) 552, 789
VpaK11BI GGWCC 3 cut(s) 422, 656, 751
XceI RCATGY 2 cut(s) 503, 1092
XcmI CCANNNNNNNNNTGG 1 cut(s) 1143
XmiI GTMKAC 1 cut(s) 535
XspI CTAG 4 cut(s) 609, 669, 1124, 1246
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.