Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010458

Physical Location & Seq

Genomic Coordinates Forward (+)

7075801 .. 7091847

Gene Structure 16047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1057300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTTTCCGTTATTTCTTCGCAGATGTTTGCGTTATAAAATCCAAGCAAGGCGTAGAAAGAGGTCCAGGGCTGGGGTTGTAATATTCAACTACAGGGACTACAACAATATGTTACGAAAGACTGAAGTTACTGAGGACTTCTCCTGTCCCTTTTGCTTGATGCAATGTGCAAGCTTCAAGGGTCTGCGTTATCACTTGTGCTCTTCACATGACTTATTCAACTTTGAGTTTTGGGTAACTGGAGAGTATCAGGCAGTCAACGTTTCTGTGAAAGTTGAACTATTGAGATCCGAGACTGTAGCAGATGGAGTAGTTCCACAACTTCAAACATTCTTCTTCTGTTCAAGGTCGAGAAAACGTAGGCCAAAGAACCATGGTCAACTTGAAAACCACGTTAACATACAATTCTTGGAGTTAGACTCACCTAGCCTTGCCAATGGAGGGGCACACGAGGCACATTTGGAGAATGGTGATGGTGTGAAGGCTCCCAATCTGCTCTCTGGTGGAAAAGATTTCCAAAATGGAAGGCGTAGACATGAAAACTGTGGTCATGATCATCCTAGTTCTGTAGAATGTATAGAATGTGCTACCTCAAGTTCCAACAGTCATGGTGCTACAATTTCCATTGCTCAATCATCTCCGGACATTGATTGTGTTAAATTGCTATCTGGAAGTGATTATGCACCACCAACTAAAATAAGGAAGTTAACTGCAGAGCGTTCAGAGCCAAGAAACCGTATGCTCCTGCAGAAACGACAGTTCTTTCACTCTCATAGAGTTCAGCCCATGGAGTTAGAGCAAGTATTATCAGAACGGGATAGCGAAGATGAGGTTGATGATGACATTGCAGACCTTGATGATCGGAGGATGCTTGATGATTTTGTAGATGTTACCAAAGATGAAAAGCATCTTATGCATCTCTGGAACTCATTCATCCGAAAGCAAAGTGTGCTAGCAGATGGTCATGTTGCCTGGGCATGCGAGGCATTCTCAAGACTTCATGCACCGGAGCTAAACTCCTCTCCAGATCTTTTCTGGTGTTGGAGGTTATTCATGATCAAACTTTGGAATCACGGTCTTCTTGATGCATGCGTAATGAATAGTTGCAATATCATTCTTGACGATTACAAACACAAGGGATCAGAATCATCAGATGCCATGAGAAGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

391

Amino Acids

44.93

Weight (kDa)

7.0

Isoelectric Point (pI)

65.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_SUZ12	PF23320	25 - 91	1.4e-31	Polycomb protein SUZ12-like, Zn domain
VEFS-Box	PF09733	245 - 365	1.6e-52	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16845 AT4G16845
fragaria_vesca	FvH4_5g19940 FvH4_5g19940
malus_domestica	MD04G1057300.v1.1 MD06G1050700.v1.1
prunus_persica	Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1
pyrus_communis	pycom04g05090 pycom06g04270
rosa_chinensis	RchiOBHm_Chr7g0204761
rosa_laevigata	RLG00000003435
rosa_multiflora	Rmu_sc0007104.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252840
rosa_rugosa	Rorug07G0085900
rosa_samantha	Rh7AG215900 Rh7BG213000 Rh7CG229100 Rh7DG223500
rosa_wichuraiana	Rw7G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	532
AccIII	TCCGGA	1 cut(s)	640
AclI	AACGTT	1 cut(s)	261
AclWI	GGATC	2 cut(s)	282, 1147
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	72, 441
AgsI	TTSAA	7 cut(s)	88, 178, 220, 278, 326, 345, 386
AjnI	CCWGG	2 cut(s)	65, 971
AluBI	AGCT	2 cut(s)	174, 1012
AluI	AGCT	2 cut(s)	174, 1012
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	282, 1147
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	929
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	414, 482
AsuNHI	GCTAGC	1 cut(s)	952
AvaII	GGWCC	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	1070
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	3 cut(s)	299, 467, 953
BciT130I	CCWGG	2 cut(s)	67, 973
BclI	TGATCA	2 cut(s)	553, 1056
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	3 cut(s)	426, 561, 953
BfmI	CTRYAG	5 cut(s)	91, 297, 567, 711, 746
BglII	AGATCT	1 cut(s)	1027
Bme1390I	CCNGG	2 cut(s)	67, 973
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	67, 973
BmsI	GCATC	6 cut(s)	150, 858, 916, 925, 1075, 1144
BmtI	GCTAGC	1 cut(s)	956
BpiI	GAAGAC	1 cut(s)	1070
BplI	GAGNNNNNCTC	8 cut(s)	125, 157, 404, 436, 974, 1006, 1001, 1033
BpmI	CTGGAG	2 cut(s)	261, 1008
BpuEI	CTTGAG	2 cut(s)	577, 976
BsaBI	GATNNNNATC	1 cut(s)	1144
BsaJI	CCNNGG	4 cut(s)	66, 373, 786, 972
BsaWI	WCCGGW	2 cut(s)	640, 1006
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 441
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	3 cut(s)	170, 624, 843
Bse8I	GATNNNNATC	1 cut(s)	1144
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	67, 973
BseDI	CCNNGG	4 cut(s)	66, 373, 786, 972
BseGI	GGATG	3 cut(s)	556, 873, 933
BseJI	GATNNNNATC	1 cut(s)	1144
BseLI	CCNNNNNNNGG	2 cut(s)	72, 441
BseMI	GCAATG	3 cut(s)	170, 624, 843
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	1009
BseSI	GKGCMC	1 cut(s)	448
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	641, 1007
BslFI	GGGAC	2 cut(s)	110, 132
BslI	CCNNNNNNNGG	2 cut(s)	72, 441
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	110, 132
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	1 cut(s)	364
Bsp1286I	GDGCHC	2 cut(s)	203, 448
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
Bsp19I	CCATGG	2 cut(s)	373, 786
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	640
BspHI	TCATGA	2 cut(s)	550, 1053
BspLI	GGNNCC	1 cut(s)	486
BspMAI	CTGCAG	2 cut(s)	715, 750
BspOI	GCTAGC	1 cut(s)	956
BspPI	GGATC	2 cut(s)	282, 1147
BspQI	GCTCTTC	1 cut(s)	208
BsrDI	GCAATG	3 cut(s)	170, 624, 843
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	4 cut(s)	66, 373, 786, 972
BssMI	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
BssSI	CACGAG	1 cut(s)	449
BssT1I	CCWWGG	2 cut(s)	373, 786
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	2 cut(s)	67, 973
Bst4CI	ACNGT	6 cut(s)	298, 545, 605, 737, 759, 1076
Bst6I	CTCTTC	1 cut(s)	208
BstAPI	GCANNNNNTGC	2 cut(s)	913, 949
BstC8I	GCNNGC	4 cut(s)	172, 954, 979, 1090
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	2 cut(s)	373, 786
BstF5I	GGATG	3 cut(s)	556, 873, 933
BstKTI	GATC	6 cut(s)	290, 556, 862, 1030, 1059, 1142
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 724, 913, 949, 983
BstNI	CCWGG	2 cut(s)	67, 973
BstNSI	RCATGY	2 cut(s)	981, 1092
BstSCI	CCNGG	2 cut(s)	65, 971
BstSFI	CTRYAG	5 cut(s)	91, 297, 567, 711, 746
BstSLI	GKGCMC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	2 cut(s)	287, 1027
BstYI	RGATCY	2 cut(s)	287, 1027
BsuRI	GGCC	1 cut(s)	364
BtgI	CCRYGG	2 cut(s)	373, 786
BtsCI	GGATG	3 cut(s)	556, 873, 933
Cac8I	GCNNGC	4 cut(s)	172, 954, 979, 1090
CciI	TCATGA	2 cut(s)	550, 1053
Cfr13I	GGNCC	1 cut(s)	63
CviJI	RGCY	8 cut(s)	71, 174, 364, 429, 485, 727, 784, 1012
CviKI_1	RGCY	8 cut(s)	71, 174, 364, 429, 485, 727, 784, 1012
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	6 cut(s)	289, 555, 861, 1029, 1058, 1141
DpnII	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	373, 786
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	65, 971
EcoT14I	CCWWGG	2 cut(s)	373, 786
EcoT22I	ATGCAT	2 cut(s)	918, 1090
ErhI	CCWWGG	2 cut(s)	373, 786
FaqI	GGGAC	2 cut(s)	110, 132
FbaI	TGATCA	2 cut(s)	553, 1056
FblI	GTMKAC	1 cut(s)	532
FokI	GGATG	3 cut(s)	543, 880, 920
FspBI	CTAG	3 cut(s)	426, 561, 953
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	2 cut(s)	261, 1008
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	2 cut(s)	641, 1007
HincII	GTYRAC	4 cut(s)	259, 380, 397, 708
HindII	GTYRAC	4 cut(s)	259, 380, 397, 708
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	3 cut(s)	419, 1069, 1145
HpaI	GTTAAC	2 cut(s)	397, 708
HpaII	CCGG	2 cut(s)	641, 1007
HphI	GGTGA	2 cut(s)	414, 482
Hpy166II	GTNNAC	5 cut(s)	259, 380, 397, 533, 708
Hpy188I	TCNGA	7 cut(s)	292, 724, 811, 864, 938, 1144, 1153
Hpy8I	GTNNAC	5 cut(s)	259, 380, 397, 533, 708
HpyAV	CCTTC	2 cut(s)	475, 519
HpyCH4III	ACNGT	6 cut(s)	298, 545, 605, 737, 759, 1076
HpyCH4IV	ACGT	3 cut(s)	261, 358, 393
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 724, 913, 949, 983
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	3 cut(s)	261, 358, 393
Kpn2I	TCCGGA	1 cut(s)	640
Ksp22I	TGATCA	2 cut(s)	553, 1056
KspAI	GTTAAC	2 cut(s)	397, 708
Kzo9I	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	3 cut(s)	490, 747, 1009
LweI	GCATC	6 cut(s)	150, 858, 916, 925, 1075, 1144
MaeI	CTAG	3 cut(s)	426, 561, 953
MaeII	ACGT	3 cut(s)	261, 358, 393
MaeIII	GTNAC	4 cut(s)	111, 127, 235, 889
MalI	GATC	6 cut(s)	289, 555, 861, 1029, 1058, 1141
MboI	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
MboII	GAAGA	6 cut(s)	8, 195, 325, 328, 836, 1070
MflI	RGATCY	2 cut(s)	287, 1027
MhlI	GDGCHC	2 cut(s)	203, 448
MluCI	AATT	3 cut(s)	404, 618, 659
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	624, 1022
Mph1103I	ATGCAT	2 cut(s)	918, 1090
MroI	TCCGGA	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	929
MseI	TTAA	4 cut(s)	396, 657, 707, 1171
MspI	CCGG	2 cut(s)	641, 1007
MspR9I	CCNGG	2 cut(s)	67, 973
Mva1269I	GAATGC	1 cut(s)	986
MvaI	CCWGG	2 cut(s)	67, 973
MwoI	GCNNNNNNNGC	5 cut(s)	452, 724, 913, 949, 983
NcoI	CCATGG	2 cut(s)	373, 786
NdeII	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
NheI	GCTAGC	1 cut(s)	952
NlaIV	GGNNCC	1 cut(s)	486
NsiI	ATGCAT	2 cut(s)	918, 1090
NspI	RCATGY	2 cut(s)	981, 1092
PaeI	GCATGC	2 cut(s)	981, 1092
PagI	TCATGA	2 cut(s)	550, 1053
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	2 cut(s)	1069, 1145
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	65, 971
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	65, 971
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	63
PstI	CTGCAG	2 cut(s)	715, 750
PsuI	RGATCY	2 cut(s)	287, 1027
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	4 cut(s)	396, 657, 707, 1171
Sau3AI	GATC	6 cut(s)	287, 553, 859, 1027, 1056, 1139
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	67, 973
SduI	GDGCHC	2 cut(s)	203, 448
SfaNI	GCATC	6 cut(s)	150, 858, 916, 925, 1075, 1144
SfcI	CTRYAG	5 cut(s)	91, 297, 567, 711, 746
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	592, 991
SmoI	CTYRAG	2 cut(s)	592, 991
SphI	GCATGC	2 cut(s)	981, 1092
Sse9I	AATT	3 cut(s)	404, 618, 659
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	3 cut(s)	426, 561, 953
StyD4I	CCNGG	2 cut(s)	65, 971
StyI	CCWWGG	2 cut(s)	373, 786
TaaI	ACNGT	6 cut(s)	298, 545, 605, 737, 759, 1076
TaiI	ACGT	3 cut(s)	264, 361, 396
TaqI	TCGA	1 cut(s)	350
TasI	AATT	3 cut(s)	404, 618, 659
TfiI	GAWTC	2 cut(s)	1069, 1145
Tru1I	TTAA	4 cut(s)	396, 657, 707, 1171
Tru9I	TTAA	4 cut(s)	396, 657, 707, 1171
TspDTI	ATGAA	6 cut(s)	552, 915, 922, 989, 1042, 1112
VpaK11BI	GGWCC	1 cut(s)	63
XceI	RCATGY	2 cut(s)	981, 1092
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1032
XmiI	GTMKAC	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	3 cut(s)	426, 561, 953
Zsp2I	ATGCAT	2 cut(s)	918, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.