Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010458

Physical Location & Seq

Genomic Coordinates Forward (+)

46902217 .. 46910944

Gene Structure 8728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTGCCGTCATGATTTGTCAGCAGGCGAGGCGGTTTCAATCGAAGAGAATCTCTTGATATATTGCAAGCCGGTTGAGCTCTACAATATTCTTCGCCCTCGTGCTTTGCATAATGTAACTGGAGAGTATCGGGCGGTGAATGTTTCTGTTAAAACTGATACATTGAGATCTGAGGGTTTGGCAGGAGGCCCAGTTACCGAGCCTGGTTCACATAGTAGTTCAAGGCCAAGAAAACGCAGGTCACTGGACTGTGGTCAAAATATAAAGCATGCTAATATACAATTCTTGGAGTTGGACTCAAGTATACTAACGAGCGAAGGTGCACAGAAAGGACTTTTGGTGAATGGTAATAGTGAGAAGGTTCCCGATCTGCTTCCTAGTGGGGTAGATATCCAGAATGGAAGGCAAGGACAAGAAAACAATGGTCCTCATAATCCTAGACCAATGGAATCTATAAAATGTGTTACATCAAGTTCCAGTGCTCCTGGTATTACAATTGCTGTTGCTCAACCTTCTCTGGACCCTAATTGTGTTAAATTGCAATCTGGAAGTGATTCAGCCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGAAATTCTGAGAAAACATGCATGACTTGTTTTTGTATGAAGCCCATGGAGTTGGAGCAAATATTATCAGATCTGGATAGCGAAGATGAAGTTGATGATGATGTTGCAGATCTTGAAGATCGGAGGATGCTCGATGATTTTGTAGATGTTACCAAAGATGAAAAGCAGCTGATGCACCTTTGGAACTCGTTTGTGCGGAGGCAAAGTGTGCTGGCAGATGCTCATGTTCCCTGGGCATGTGAGGCATTTTCAAGACTTCATGGACAGGAGCTAGTCTCCTCTCCAGCTCTTTTCTGGCCAACACTAGGTGTTGGAGATTATTCATGGTCAAACTTTGGAATCACGGTCTTCTTGATGCCTGCACAATCAATAGTTGCAATGTCATTCTCAATGGATACAAGAACTAGGGGATCAGATGCTATTAGAAGTTATAGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

348

Amino Acids

38.25

Weight (kDa)

5.11

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VEFS-Box	PF09733	215 - 301	1.1e-36	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16845 AT4G16845
fragaria_vesca	FvH4_5g19940 FvH4_5g19940
malus_domestica	MD04G1057300.v1.1 MD06G1050700.v1.1
prunus_persica	Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1
pyrus_communis	pycom04g05090 pycom06g04270
rosa_chinensis	RchiOBHm_Chr7g0204761
rosa_laevigata	RLG00000003435
rosa_multiflora	Rmu_sc0007104.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252840
rosa_rugosa	Rorug07G0085900
rosa_samantha	Rh7AG215900 Rh7BG213000 Rh7CG229100 Rh7DG223500
rosa_wichuraiana	Rw7G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	3 cut(s)	32, 134, 802
AclWI	GGATC	1 cut(s)	1024
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	1 cut(s)	610
AdeI	CACNNNGTG	1 cut(s)	914
AfiI	CCNNNNNNNGG	1 cut(s)	911
AgsI	TTSAA	4 cut(s)	39, 222, 722, 858
AjnI	CCWGG	3 cut(s)	202, 484, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	4 cut(s)	79, 775, 877, 893
AluI	AGCT	4 cut(s)	79, 775, 877, 893
Alw21I	GWGCWC	3 cut(s)	81, 325, 484
Alw26I	GTCTC	1 cut(s)	886
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	1024
AoxI	GGCC	3 cut(s)	187, 224, 902
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	772
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	188, 425, 520
AsuHPI	GGTGA	2 cut(s)	148, 352
AvaII	GGWCC	2 cut(s)	425, 520
BaeGI	GKGCMC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	946
Bbv12I	GWGCWC	3 cut(s)	81, 325, 484
BbvI	GCAGC	1 cut(s)	784
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	3 cut(s)	204, 486, 838
BciVI	GTATCC	1 cut(s)	994
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	5 cut(s)	378, 438, 878, 911, 1011
BfmI	CTRYAG	1 cut(s)	571
BfuAI	ACCTGC	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	994
BglII	AGATCT	3 cut(s)	167, 676, 715
BisI	GCNGC	1 cut(s)	773
BlsI	GCNGC	1 cut(s)	774
Bme1390I	CCNGG	3 cut(s)	204, 486, 838
Bme18I	GGWCC	2 cut(s)	425, 520
BmgT120I	GGNCC	3 cut(s)	188, 425, 520
BmiI	GGNNCC	2 cut(s)	363, 522
BmrFI	CCNGG	3 cut(s)	204, 486, 838
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	5 cut(s)	723, 768, 814, 951, 1012
BmuI	ACTGGG	1 cut(s)	185
BoxI	GACNNNNGTC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	946
BplI	GAGNNNNNCTC	4 cut(s)	281, 313, 866, 898
BpmI	CTGGAG	2 cut(s)	141, 873
BpuEI	CTTGAG	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	651, 836, 837
BsaXI	ACNNNNNCTCC	4 cut(s)	177, 207, 796, 826
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	4 cut(s)	124, 191, 249, 477
Bse3DI	GCAATG	1 cut(s)	990
BseBI	CCWGG	3 cut(s)	204, 486, 838
BseDI	CCNNGG	3 cut(s)	651, 836, 837
BseGI	GGATG	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	1 cut(s)	990
BseMII	CTCAG	2 cut(s)	162, 606
BseNI	ACTGG	4 cut(s)	124, 191, 249, 477
BseRI	GAGGAG	1 cut(s)	874
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	784
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	3 cut(s)	189, 226, 904
BsiHKAI	GWGCWC	3 cut(s)	81, 325, 484
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmAI	GTCTC	1 cut(s)	886
BsnI	GGCC	3 cut(s)	189, 226, 904
Bsp1286I	GDGCHC	3 cut(s)	81, 325, 484
Bsp143I	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	3 cut(s)	32, 134, 802
BspANI	GGCC	3 cut(s)	189, 226, 904
BspCNI	CTCAG	2 cut(s)	163, 607
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	363, 522
BspMAI	CTGCAG	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	990
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	4 cut(s)	124, 191, 249, 477
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	651, 836, 837
BssMI	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
BssNAI	GTATAC	1 cut(s)	305
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	651
Bst1107I	GTATAC	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	3 cut(s)	204, 486, 838
Bst4CI	ACNGT	3 cut(s)	251, 584, 952
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	2 cut(s)	778, 814
BstC8I	GCNNGC	5 cut(s)	25, 68, 270, 819, 966
BstDEI	CTNAG	2 cut(s)	171, 615
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	1 cut(s)	738
BstKTI	GATC	6 cut(s)	170, 370, 679, 718, 727, 1019
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 76, 778, 814, 848
BstNI	CCWGG	3 cut(s)	204, 486, 838
BstNSI	RCATGY	3 cut(s)	272, 627, 846
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	3 cut(s)	202, 484, 836
BstSFI	CTRYAG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	784
BstV2I	GAAGAC	1 cut(s)	946
BstX2I	RGATCY	3 cut(s)	167, 676, 715
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	3 cut(s)	167, 676, 715
BstZ17I	GTATAC	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	3 cut(s)	189, 226, 904
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	242, 484
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	5 cut(s)	25, 68, 270, 819, 966
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	188, 425, 520
CviAII	CATG	9 cut(s)	11, 269, 624, 628, 652, 830, 843, 866, 930
DdeI	CTNAG	2 cut(s)	171, 615
DpnI	GATC	6 cut(s)	169, 369, 678, 717, 726, 1018
DpnII	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
DraIII	CACNNNGTG	1 cut(s)	914
EaeI	YGGCCR	1 cut(s)	902
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	425, 520
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	202, 484, 836
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	9 cut(s)	14, 272, 627, 631, 655, 833, 846, 869, 933
FatI	CATG	9 cut(s)	10, 268, 623, 627, 651, 829, 842, 865, 929
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	773
FokI	GGATG	1 cut(s)	745
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	773
FspBI	CTAG	5 cut(s)	378, 438, 878, 911, 1011
GluI	GCNGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	141, 873
HaeIII	GGCC	3 cut(s)	189, 226, 904
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	9 cut(s)	14, 272, 627, 631, 655, 833, 846, 869, 933
HinfI	GANTC	6 cut(s)	49, 296, 449, 554, 602, 945
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	148, 352
Hpy166II	GTNNAC	3 cut(s)	209, 305, 323
Hpy188I	TCNGA	5 cut(s)	172, 616, 676, 729, 1021
Hpy8I	GTNNAC	3 cut(s)	209, 305, 323
HpyAV	CCTTC	4 cut(s)	311, 352, 396, 522
HpyCH4III	ACNGT	3 cut(s)	251, 584, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 76, 778, 814, 848
HpyF3I	CTNAG	2 cut(s)	171, 615
Hsp92II	CATG	9 cut(s)	14, 272, 627, 631, 655, 833, 846, 869, 933
Kzo9I	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
LmnI	GCTCC	4 cut(s)	487, 572, 661, 874
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	5 cut(s)	723, 768, 814, 951, 1012
MaeI	CTAG	5 cut(s)	378, 438, 878, 911, 1011
MaeIII	GTNAC	5 cut(s)	115, 193, 240, 463, 754
MalI	GATC	6 cut(s)	169, 369, 678, 717, 726, 1018
MboI	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
MboII	GAAGA	5 cut(s)	56, 83, 701, 734, 946
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	3 cut(s)	167, 676, 715
MhlI	GDGCHC	3 cut(s)	81, 325, 484
MlsI	TGGCCA	1 cut(s)	904
MluCI	AATT	5 cut(s)	281, 495, 526, 536, 610
MluNI	TGGCCA	1 cut(s)	904
MlyI	GAGTC	2 cut(s)	290, 611
MmeI	TCCRAC	3 cut(s)	273, 639, 898
MnlI	CCTC	9 cut(s)	22, 108, 166, 179, 438, 723, 798, 841, 895
Mox20I	TGGCCA	1 cut(s)	904
Mph1103I	ATGCAT	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	553
MscI	TGGCCA	1 cut(s)	904
MseI	TTAA	2 cut(s)	150, 534
Msp20I	TGGCCA	1 cut(s)	904
MspA1I	CMGCKG	1 cut(s)	775
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	204, 486, 838
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	3 cut(s)	204, 486, 838
MwoI	GCNNNNNNNGC	5 cut(s)	29, 76, 778, 814, 848
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
NlaIII	CATG	9 cut(s)	14, 272, 627, 631, 655, 833, 846, 869, 933
NlaIV	GGNNCC	2 cut(s)	363, 522
NmuCI	GTSAC	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	629
NspI	RCATGY	3 cut(s)	272, 627, 846
PaeI	GCATGC	1 cut(s)	272
PagI	TCATGA	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	837
PdmI	GAANNNNTTC	1 cut(s)	553
PfeI	GAWTC	4 cut(s)	49, 449, 554, 945
PkrI	GCNGC	1 cut(s)	774
PleI	GAGTC	2 cut(s)	290, 610
PpsI	GAGTC	2 cut(s)	290, 610
PshAI	GACNNNNGTC	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	3 cut(s)	202, 484, 836
PspGI	CCWGG	3 cut(s)	202, 484, 836
PspN4I	GGNNCC	2 cut(s)	363, 522
PspPI	GGNCC	3 cut(s)	188, 425, 520
PstI	CTGCAG	1 cut(s)	575
PsuI	RGATCY	3 cut(s)	167, 676, 715
PvuII	CAGCTG	1 cut(s)	775
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	150, 534
SatI	GCNGC	1 cut(s)	773
Sau3AI	GATC	6 cut(s)	167, 367, 676, 715, 724, 1016
Sau96I	GGNCC	3 cut(s)	188, 425, 520
SchI	GAGTC	2 cut(s)	290, 611
ScrFI	CCNGG	3 cut(s)	204, 486, 838
SduI	GDGCHC	3 cut(s)	81, 325, 484
SfaNI	GCATC	5 cut(s)	723, 768, 814, 951, 1012
SfcI	CTRYAG	1 cut(s)	571
SinI	GGWCC	2 cut(s)	425, 520
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	5 cut(s)	281, 495, 526, 536, 610
SsiI	CCGC	3 cut(s)	32, 134, 802
SspI	AATATT	2 cut(s)	88, 669
SspMI	CTAG	5 cut(s)	378, 438, 878, 911, 1011
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	202, 484, 836
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	3 cut(s)	251, 584, 952
TaqI	TCGA	2 cut(s)	42, 738
TasI	AATT	5 cut(s)	281, 495, 526, 536, 610
TfiI	GAWTC	4 cut(s)	49, 449, 554, 945
Tru1I	TTAA	2 cut(s)	150, 534
Tru9I	TTAA	2 cut(s)	150, 534
TscAI	CASTG	2 cut(s)	249, 484
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	1 cut(s)	772
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	5 cut(s)	659, 708, 780, 854, 918
TspRI	CASTG	2 cut(s)	249, 484
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	425, 520
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	3 cut(s)	272, 627, 846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	897
XmiI	GTMKAC	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	553
XspI	CTAG	5 cut(s)	378, 438, 878, 911, 1011
Zsp2I	ATGCAT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.