Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007104.1

Orthogroup ID

OG0010458

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 8491

Gene Structure 8491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007104.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

cctttatttcttcgtagatgtttgcgatacgaaatccaagcaaagcataaacagaggttcaatgctgggactgtaatattcaactataaggactactgcaacactttgcaaaaaactgaagtcaccgaagacttctcatgtcccttttgcttgatgcaatgtgcaagctttaagggtctgcggtatcacttgtgctcgtcacatgacttattcaactttgagttttgggtaaccggagagtatcgggcagtgaatgtttctgttaaaactgatgcattgagatctgagactgtagcagaaggagcaggcccacaacttcaaacattcttcttctgttcaaggccaagaaaacgcaggtcactggactgtggtcaaaataaaaagcatgttaatgtacaattcttggagttggactcaagtatactaacgagcgaatgtgcacagaaaggacttttggtgaatggtaatggtgagaaggctcccgatctgcttcctagtggggtagatatccagaatggaaggcaaggacaagaaaacaatggtcctcataatcctagaccgatggaatctataaaatgtgttacatcaagttccagtgctcctggtattacaattgctgttgctcaaccttctctggaccctaattgtgttaaattgcaatctggaagtgattgtgcaccccctgctaaaatgaggaagttaaatggagagcgatcagaccctaaaaacagccgtatgctcctgcagaaacgacagttctatcattctcacagagtccagcccatggagttggagcaagtattatcagatctggatagcgaagatgaagctgatgatgacgttgcagatcttgaagatcggaggatgcttgatgattttgtagatgttaccaaagatgaaaagcagctgatgcacctttggaactcgtttgtgcggaggcaaagtgtgctggcagatgctcatgttccctgggcatgtgaggcattttcaagacttcatggacaggagctagtctcctctccagctcttttctggtgttggagattattcatggtcaaactttggaatcacgattatattaccctcacccctttgttacatagagagagaagccataggagactttgctggagtcccgtcaccggttgttggaatccggccaatgatcgccggaatccggtcaccggctgccacctaccggattctctgaaaacctcactggaggttcccaaagagatcgtcggaaatctcataggtcgccggaaaggtttattgcctccaaatagacgactattgtcccccaatagagctgtattgccccccaacttttcgagggttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

447

Amino Acids

50.98

Weight (kDa)

8.63

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16845 AT4G16845
fragaria_vesca	FvH4_5g19940 FvH4_5g19940
malus_domestica	MD04G1057300.v1.1 MD06G1050700.v1.1
prunus_persica	Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1
pyrus_communis	pycom04g05090 pycom06g04270
rosa_chinensis	RchiOBHm_Chr7g0204761
rosa_laevigata	RLG00000003435
rosa_multiflora	Rmu_sc0007104.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252840
rosa_rugosa	Rorug07G0085900
rosa_samantha	Rh7AG215900 Rh7BG213000 Rh7CG229100 Rh7DG223500
rosa_wichuraiana	Rw7G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	2 cut(s)	181, 934
AcoI	YGGCCR	1 cut(s)	1158
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	6 cut(s)	784, 1142, 1149, 1177, 1184, 1198
AgeI	ACCGGT	1 cut(s)	1142
AgsI	TTSAA	7 cut(s)	61, 82, 214, 320, 339, 854, 990
AjnI	CCWGG	2 cut(s)	601, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	6 cut(s)	168, 830, 907, 1009, 1025, 1310
AluI	AGCT	6 cut(s)	168, 830, 907, 1009, 1025, 1310
Alw21I	GWGCWC	4 cut(s)	197, 442, 601, 679
Alw26I	GTCTC	3 cut(s)	281, 1018, 1114
Alw44I	GTGCAC	2 cut(s)	438, 675
AoxI	GGCC	3 cut(s)	307, 341, 1158
ApaLI	GTGCAC	2 cut(s)	438, 675
ApeKI	GCWGC	2 cut(s)	904, 1188
ArsI	GACNNNNNNTTYG	2 cut(s)	1224, 1256
AsiGI	ACCGGT	1 cut(s)	1142
AspS9I	GGNCC	3 cut(s)	308, 542, 637
AsuHPI	GGTGA	6 cut(s)	115, 469, 482, 1078, 1132, 1174
AvaII	GGWCC	2 cut(s)	542, 637
BaeGI	GKGCMC	2 cut(s)	442, 679
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	4 cut(s)	197, 442, 601, 679
BbvI	GCAGC	2 cut(s)	916, 1175
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	2 cut(s)	603, 970
BcoDI	GTCTC	3 cut(s)	281, 1018, 1114
BfaI	CTAG	3 cut(s)	495, 555, 1010
BfmI	CTRYAG	2 cut(s)	291, 743
BfuAI	ACCTGC	1 cut(s)	345
BglII	AGATCT	3 cut(s)	281, 808, 847
BisI	GCNGC	2 cut(s)	905, 1189
BlsI	GCNGC	2 cut(s)	906, 1190
Bme1390I	CCNGG	2 cut(s)	603, 970
Bme18I	GGWCC	2 cut(s)	542, 637
BmgT120I	GGNCC	3 cut(s)	308, 542, 637
BmiI	GGNNCC	3 cut(s)	480, 639, 1227
BmrFI	CCNGG	2 cut(s)	603, 970
BmsI	GCATC	5 cut(s)	144, 262, 855, 900, 946
BoxI	GACNNNNGTC	2 cut(s)	369, 1294
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	4 cut(s)	398, 430, 998, 1030
BpmI	CTGGAG	3 cut(s)	1005, 1150, 1241
BpuEI	CTTGAG	1 cut(s)	400
BsaJI	CCNNGG	3 cut(s)	783, 968, 969
BsaWI	WCCGGW	4 cut(s)	233, 1142, 1177, 1198
BsaXI	ACNNNNNCTCC	2 cut(s)	928, 958
Bsc4I	CCNNNNNNNGG	6 cut(s)	784, 1142, 1149, 1177, 1184, 1198
Bse118I	RCCGGY	2 cut(s)	1142, 1184
Bse1I	ACTGG	3 cut(s)	366, 594, 1224
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	603, 970
BseDI	CCNNGG	3 cut(s)	783, 968, 969
BseGI	GGATG	1 cut(s)	870
BseLI	CCNNNNNNNGG	6 cut(s)	784, 1142, 1149, 1177, 1184, 1198
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	3 cut(s)	366, 594, 1224
BseRI	GAGGAG	1 cut(s)	1006
BseSI	GKGCMC	2 cut(s)	442, 679
BseXI	GCAGC	2 cut(s)	916, 1175
BseYI	CCCAGC	1 cut(s)	65
BshFI	GGCC	3 cut(s)	309, 343, 1160
BshTI	ACCGGT	1 cut(s)	1142
BsiHKAI	GWGCWC	4 cut(s)	197, 442, 601, 679
BsiSI	CCGG	8 cut(s)	234, 1143, 1157, 1171, 1178, 1185, 1199, 1261
BslFI	GGGAC	4 cut(s)	82, 126, 1119, 1282
BslI	CCNNNNNNNGG	6 cut(s)	784, 1142, 1149, 1177, 1184, 1198
BsmAI	GTCTC	3 cut(s)	281, 1018, 1114
BsmFI	GGGAC	4 cut(s)	82, 126, 1119, 1282
BsnI	GGCC	3 cut(s)	309, 343, 1160
Bsp1286I	GDGCHC	4 cut(s)	197, 442, 601, 679
Bsp1407I	TGTACA	1 cut(s)	394
Bsp143I	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	2 cut(s)	181, 934
BspANI	GGCC	3 cut(s)	309, 343, 1160
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	480, 639, 1227
BspMAI	CTGCAG	1 cut(s)	747
BspMI	ACCTGC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	1142, 1184
BsrGI	TGTACA	1 cut(s)	394
BsrI	ACTGG	3 cut(s)	366, 594, 1224
BssAI	RCCGGY	2 cut(s)	1142, 1184
BssECI	CCNNGG	3 cut(s)	783, 968, 969
BssMI	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
BssNAI	GTATAC	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	783
Bst1107I	GTATAC	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	603, 970
Bst4CI	ACNGT	4 cut(s)	73, 292, 368, 756
BstAPI	GCANNNNNTGC	3 cut(s)	683, 910, 946
BstAUI	TGTACA	1 cut(s)	394
BstC8I	GCNNGC	3 cut(s)	166, 307, 951
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	783
BstEII	GGTNACC	2 cut(s)	229, 1180
BstF5I	GGATG	1 cut(s)	870
BstKTI	GATC	8 cut(s)	284, 487, 716, 811, 850, 859, 1168, 1239
BstMAI	GTCTC	3 cut(s)	281, 1018, 1114
BstMBI	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 683, 910, 946, 980
BstNI	CCWGG	2 cut(s)	603, 970
BstNSI	RCATGY	2 cut(s)	389, 978
BstPAI	GACNNNNGTC	2 cut(s)	369, 1294
BstPI	GGTNACC	2 cut(s)	229, 1180
BstSCI	CCNGG	2 cut(s)	601, 968
BstSFI	CTRYAG	2 cut(s)	291, 743
BstSLI	GKGCMC	2 cut(s)	442, 679
BstV1I	GCAGC	2 cut(s)	916, 1175
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	3 cut(s)	281, 808, 847
BstXI	CCANNNNNNTGG	1 cut(s)	790
BstYI	RGATCY	3 cut(s)	281, 808, 847
BstZ17I	GTATAC	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	309, 343, 1160
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	1 cut(s)	870
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	4 cut(s)	255, 359, 601, 1217
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	166, 307, 951
Cfr10I	RCCGGY	2 cut(s)	1142, 1184
Cfr13I	GGNCC	3 cut(s)	308, 542, 637
Csp6I	GTAC	1 cut(s)	395
CspAI	ACCGGT	1 cut(s)	1142
CviAII	CATG	8 cut(s)	138, 203, 386, 784, 962, 975, 998, 1051
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	8 cut(s)	283, 486, 715, 810, 849, 858, 1167, 1238
DpnII	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
EaeI	YGGCCR	1 cut(s)	1158
Eco130I	CCWWGG	1 cut(s)	783
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	542, 637
Eco57I	CTGAAG	1 cut(s)	138
Eco91I	GGTNACC	2 cut(s)	229, 1180
EcoO65I	GGTNACC	2 cut(s)	229, 1180
EcoRII	CCWGG	2 cut(s)	601, 968
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	8 cut(s)	141, 206, 389, 787, 965, 978, 1001, 1054
FaqI	GGGAC	4 cut(s)	82, 126, 1119, 1282
FatI	CATG	8 cut(s)	137, 202, 385, 783, 961, 974, 997, 1050
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	905, 1189
FokI	GGATG	1 cut(s)	877
Fsp4HI	GCNGC	2 cut(s)	905, 1189
FspBI	CTAG	3 cut(s)	495, 555, 1010
GluI	GCNGC	2 cut(s)	905, 1189
GsaI	CCCAGC	1 cut(s)	69
GsuI	CTGGAG	3 cut(s)	1005, 1150, 1241
HaeIII	GGCC	3 cut(s)	309, 343, 1160
HapII	CCGG	8 cut(s)	234, 1143, 1157, 1171, 1178, 1185, 1199, 1261
Hin1II	CATG	8 cut(s)	141, 206, 389, 787, 965, 978, 1001, 1054
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	8 cut(s)	413, 566, 774, 1066, 1132, 1153, 1174, 1202
HpaII	CCGG	8 cut(s)	234, 1143, 1157, 1171, 1178, 1185, 1199, 1261
HphI	GGTGA	6 cut(s)	115, 469, 482, 1078, 1132, 1174
Hpy166II	GTNNAC	3 cut(s)	422, 440, 677
Hpy188I	TCNGA	6 cut(s)	286, 718, 808, 861, 1209, 1244
Hpy188III	TCNNGA	8 cut(s)	482, 511, 635, 663, 812, 851, 990, 1070
Hpy8I	GTNNAC	3 cut(s)	422, 440, 677
Hpy99I	CGWCG	1 cut(s)	1244
HpyAV	CCTTC	4 cut(s)	293, 469, 513, 639
HpyCH4III	ACNGT	4 cut(s)	73, 292, 368, 756
HpyCH4IV	ACGT	1 cut(s)	840
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 683, 910, 946, 980
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	840
Hsp92II	CATG	8 cut(s)	141, 206, 389, 787, 965, 978, 1001, 1054
Kzo9I	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
LmnI	GCTCC	6 cut(s)	302, 484, 604, 744, 793, 1006
Lsp1109I	GCAGC	2 cut(s)	916, 1175
LweI	GCATC	5 cut(s)	144, 262, 855, 900, 946
MaeI	CTAG	3 cut(s)	495, 555, 1010
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	9 cut(s)	121, 198, 229, 357, 580, 886, 1095, 1138, 1180
MalI	GATC	8 cut(s)	283, 486, 715, 810, 849, 858, 1167, 1238
MboI	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
MboII	GAAGA	5 cut(s)	140, 319, 322, 833, 866
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	3 cut(s)	281, 808, 847
MhlI	GDGCHC	4 cut(s)	197, 442, 601, 679
MluCI	AATT	4 cut(s)	398, 612, 643, 653
MlyI	GAGTC	3 cut(s)	407, 783, 1141
MmeI	TCCRAC	5 cut(s)	390, 771, 1019, 1130, 1222
Mph1103I	ATGCAT	1 cut(s)	277
MseI	TTAA	5 cut(s)	171, 264, 390, 651, 701
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	907
MspI	CCGG	8 cut(s)	234, 1143, 1157, 1171, 1178, 1185, 1199, 1261
MspR9I	CCNGG	2 cut(s)	603, 970
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	603, 970
MwoI	GCNNNNNNNGC	5 cut(s)	302, 683, 910, 946, 980
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
NlaIII	CATG	8 cut(s)	141, 206, 389, 787, 965, 978, 1001, 1054
NlaIV	GGNNCC	3 cut(s)	480, 639, 1227
NmuCI	GTSAC	5 cut(s)	121, 198, 357, 1138, 1180
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	2 cut(s)	389, 978
PasI	CCCWGGG	1 cut(s)	969
PfeI	GAWTC	5 cut(s)	566, 1066, 1153, 1174, 1202
PflMI	CCANNNNNTGG	1 cut(s)	784
PinAI	ACCGGT	1 cut(s)	1142
PkrI	GCNGC	2 cut(s)	906, 1190
PleI	GAGTC	3 cut(s)	407, 782, 1140
PpsI	GAGTC	3 cut(s)	407, 782, 1140
PshAI	GACNNNNGTC	2 cut(s)	369, 1294
Psp6I	CCWGG	2 cut(s)	601, 968
PspEI	GGTNACC	2 cut(s)	229, 1180
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	601, 968
PspN4I	GGNNCC	3 cut(s)	480, 639, 1227
PspPI	GGNCC	3 cut(s)	308, 542, 637
PstI	CTGCAG	1 cut(s)	747
PsuI	RGATCY	3 cut(s)	281, 808, 847
PvuII	CAGCTG	1 cut(s)	907
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	5 cut(s)	171, 264, 390, 651, 701
SatI	GCNGC	2 cut(s)	905, 1189
Sau3AI	GATC	8 cut(s)	281, 484, 713, 808, 847, 856, 1165, 1236
Sau96I	GGNCC	3 cut(s)	308, 542, 637
SchI	GAGTC	3 cut(s)	407, 783, 1141
ScrFI	CCNGG	2 cut(s)	603, 970
SduI	GDGCHC	4 cut(s)	197, 442, 601, 679
SfaNI	GCATC	5 cut(s)	144, 262, 855, 900, 946
SfcI	CTRYAG	2 cut(s)	291, 743
SinI	GGWCC	2 cut(s)	542, 637
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	4 cut(s)	398, 612, 643, 653
SsiI	CCGC	2 cut(s)	181, 934
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	3 cut(s)	495, 555, 1010
StyD4I	CCNGG	2 cut(s)	601, 968
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	4 cut(s)	73, 292, 368, 756
TaiI	ACGT	1 cut(s)	843
TaqI	TCGA	1 cut(s)	1331
TaqII	GACCGA	1 cut(s)	574
TasI	AATT	4 cut(s)	398, 612, 643, 653
TatI	WGTACW	1 cut(s)	394
TfiI	GAWTC	5 cut(s)	566, 1066, 1153, 1174, 1202
Tru1I	TTAA	5 cut(s)	171, 264, 390, 651, 701
Tru9I	TTAA	5 cut(s)	171, 264, 390, 651, 701
TscAI	CASTG	4 cut(s)	255, 366, 601, 1224
TseFI	GTSAC	5 cut(s)	121, 198, 357, 1138, 1180
TseI	GCWGC	2 cut(s)	904, 1188
Tsp45I	GTSAC	5 cut(s)	121, 198, 357, 1138, 1180
TspDTI	ATGAA	4 cut(s)	840, 912, 986, 1039
TspRI	CASTG	4 cut(s)	255, 366, 601, 1224
Van91I	CCANNNNNTGG	1 cut(s)	784
VneI	GTGCAC	2 cut(s)	438, 675
VpaK11BI	GGWCC	2 cut(s)	542, 637
XceI	RCATGY	2 cut(s)	389, 978
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1029
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	3 cut(s)	495, 555, 1010
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.