Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010458

Physical Location & Seq

Genomic Coordinates Reverse (-)

19999081 .. 20007419

Gene Structure 8339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG215900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTGCCGTCATGATTTGTCAGCAGGCGAGGCGGTTTCAATCGAAGAGAATCTCTTGATATATTGCAAGCCGGTTGAGCTCTACAATATTCTTCGCCCTCGCGCTTTGCATAATCCTTTATTTCTTCGTAGATGTTTGCGATACGAAATCCAAGCAAAGCATAAGCAGAGGTTCAATTCTGGGACTGTAATATTCAACTATAAGGACTACTGCAACAATTTACAAAAAACTGAAGTCACCGAAGACTTCTCATGTCCCTTTTGCTTGATGCAATGTGCAAGCTTTAAGGGTCTGCGGTATCACTTGTGCTCGTCGCATGACTTATTCAACTTTGAGTTTTGGGTAACTGGAGAGTATCGGGCAGTGAATGTTTCTGTTAAAACTGATGCATTGAGATCTGAGACTGTAGCAGAAGGAGCAGGCCCACAACTTCAAACATTCTTCTTCTGTTCAAGGCCAAGAAAACGCAGGTCACTGGTCTGTGGTCAAAATATAAAGCATGTTAATGTACAATTCTTGGAGTTGGACTCAAGTATACTAACGAGTGAATGTGCACAGAAAGGACTTTTGGTGAATGGTAATGGTGAGAAGGCTCCTGATCTGCTTCCTAGTGGGGTAGATATCCAGAATGGAAGGCAAGGACAAGAAAACAATGGTCCTCATAATCCTAGAGCGATGGAATCTACAAAATGTGTTACATCAAGTTCCAGTGCTCCTGGTATTACAATTGCTGTTGCTCAACCTTCTCTGGACCCTAATTGTGTTAAATTGCAATCTGGAAGTGATTGTGCACCCCCTGCTAAAATGAGGAAGTTAAATGGAGAGCGATCAGACCCTAAAAACAGCCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGCCCATGGAGTTGGAGCAAGTATTATCAGATCTGGATAGCGAAGATGAAGCTGATGATGACGTTGCAGATCTTGAAGATCGGAGGATGCTTGATGATTTTGTAGATGTTACCAAAGATGAAAAGCAGCTGATGCACCTTTGGAACTCGTTTGTGCGGAGGCAAAGGTACTCTTGCTTCCTTAGGCTTTCTCATGTTTTTCCCACTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

367

Amino Acids

41.85

Weight (kDa)

7.12

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_SUZ12	PF23320	61 - 129	1.1e-30	Polycomb protein SUZ12-like, Zn domain
VEFS-Box	PF09733	281 - 354	1.2e-30	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16845 AT4G16845
fragaria_vesca	FvH4_5g19940 FvH4_5g19940
malus_domestica	MD04G1057300.v1.1 MD06G1050700.v1.1
prunus_persica	Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1
pyrus_communis	pycom04g05090 pycom06g04270
rosa_chinensis	RchiOBHm_Chr7g0204761
rosa_laevigata	RLG00000003435
rosa_multiflora	Rmu_sc0007104.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252840
rosa_rugosa	Rorug07G0085900
rosa_samantha	Rh7AG215900 Rh7BG213000 Rh7CG229100 Rh7DG223500
rosa_wichuraiana	Rw7G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	32, 295, 1048
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	510, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	898
AgsI	TTSAA	7 cut(s)	39, 175, 196, 328, 434, 453, 968
AjnI	CCWGG	1 cut(s)	715
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	4 cut(s)	79, 282, 944, 1021
AluI	AGCT	4 cut(s)	79, 282, 944, 1021
Alw21I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	2 cut(s)	552, 789
AoxI	GGCC	2 cut(s)	421, 455
ApaLI	GTGCAC	2 cut(s)	552, 789
ApeKI	GCWGC	1 cut(s)	1018
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	422, 656, 751
AsuHPI	GGTGA	3 cut(s)	229, 583, 596
AvaII	GGWCC	2 cut(s)	656, 751
AxyI	CCTNAGG	1 cut(s)	1073
BaeGI	GKGCMC	2 cut(s)	556, 793
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	1052, 1084
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BbvI	GCAGC	1 cut(s)	1030
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	609, 669
BfmI	CTRYAG	2 cut(s)	405, 857
BfuAI	ACCTGC	1 cut(s)	459
BglII	AGATCT	3 cut(s)	395, 922, 961
BisI	GCNGC	1 cut(s)	1019
BlsI	GCNGC	1 cut(s)	1020
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	2 cut(s)	656, 751
BmgT120I	GGNCC	3 cut(s)	422, 656, 751
BmiI	GGNNCC	2 cut(s)	594, 753
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	4 cut(s)	258, 376, 969, 1014
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	897
Bsc4I	CCNNNNNNNGG	1 cut(s)	898
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	352, 480, 708
Bse21I	CCTNAGG	1 cut(s)	1073
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	897
BseGI	GGATG	1 cut(s)	984
BseLI	CCNNNNNNNGG	1 cut(s)	898
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	3 cut(s)	352, 480, 708
BseSI	GKGCMC	2 cut(s)	556, 793
BseXI	GCAGC	1 cut(s)	1030
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	423, 457
BsiHKAI	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	196, 240
BslI	CCNNNNNNNGG	1 cut(s)	898
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	196, 240
BsnI	GGCC	2 cut(s)	423, 457
Bsp1286I	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	32, 295, 1048
BspANI	GGCC	2 cut(s)	423, 457
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	594, 753
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	352, 480, 708
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
BssNAI	GTATAC	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	897
Bst1107I	GTATAC	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	3 cut(s)	187, 406, 870
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	2 cut(s)	797, 1024
BstAUI	TGTACA	1 cut(s)	508
BstC8I	GCNNGC	4 cut(s)	25, 68, 280, 421
BstDEI	CTNAG	2 cut(s)	399, 1073
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	984
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	6 cut(s)	398, 601, 830, 925, 964, 973
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 76, 416, 797, 1024
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	2 cut(s)	405, 857
BstSLI	GKGCMC	2 cut(s)	556, 793
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	1030
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	3 cut(s)	395, 922, 961
BstXI	CCANNNNNNTGG	1 cut(s)	904
BstYI	RGATCY	3 cut(s)	395, 922, 961
BstZ17I	GTATAC	1 cut(s)	536
Bsu36I	CCTNAGG	1 cut(s)	1073
BsuRI	GGCC	2 cut(s)	423, 457
BtgI	CCRYGG	1 cut(s)	897
BtgZI	GCGATG	1 cut(s)	689
BtsCI	GGATG	1 cut(s)	984
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	369, 473, 715
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	4 cut(s)	25, 68, 280, 421
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	422, 656, 751
Csp6I	GTAC	2 cut(s)	509, 1060
CviAII	CATG	6 cut(s)	11, 252, 317, 500, 898, 1085
CviQI	GTAC	2 cut(s)	509, 1060
DdeI	CTNAG	2 cut(s)	399, 1073
DpnI	GATC	6 cut(s)	397, 600, 829, 924, 963, 972
DpnII	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	656, 751
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	1073
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	897
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	6 cut(s)	14, 255, 320, 503, 901, 1088
FalI	AAGNNNNNCTT	2 cut(s)	1048, 1080
FaqI	GGGAC	2 cut(s)	196, 240
FatI	CATG	6 cut(s)	10, 251, 316, 499, 897, 1084
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	1019
FokI	GGATG	1 cut(s)	991
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	1019
FspBI	CTAG	2 cut(s)	609, 669
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	1019
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	423, 457
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	6 cut(s)	14, 255, 320, 503, 901, 1088
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	4 cut(s)	49, 527, 680, 888
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	229, 583, 596
Hpy166II	GTNNAC	3 cut(s)	536, 554, 791
Hpy188I	TCNGA	4 cut(s)	400, 832, 922, 975
Hpy188III	TCNNGA	8 cut(s)	11, 55, 596, 625, 749, 777, 926, 965
Hpy8I	GTNNAC	3 cut(s)	536, 554, 791
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	407, 583, 627, 753
HpyCH4III	ACNGT	3 cut(s)	187, 406, 870
HpyCH4IV	ACGT	1 cut(s)	954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 76, 416, 797, 1024
HpyF3I	CTNAG	2 cut(s)	399, 1073
HpySE526I	ACGT	1 cut(s)	954
Hsp92II	CATG	6 cut(s)	14, 255, 320, 503, 901, 1088
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
LmnI	GCTCC	5 cut(s)	416, 598, 718, 858, 907
Lsp1109I	GCAGC	1 cut(s)	1030
LweI	GCATC	4 cut(s)	258, 376, 969, 1014
MaeI	CTAG	2 cut(s)	609, 669
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	5 cut(s)	235, 343, 471, 694, 1000
MalI	GATC	6 cut(s)	397, 600, 829, 924, 963, 972
MboI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
MboII	GAAGA	8 cut(s)	56, 83, 116, 254, 433, 436, 947, 980
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	3 cut(s)	395, 922, 961
MhlI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
MluCI	AATT	6 cut(s)	175, 217, 512, 726, 757, 767
MlyI	GAGTC	2 cut(s)	521, 897
MmeI	TCCRAC	2 cut(s)	504, 885
MnlI	CCTC	7 cut(s)	22, 108, 162, 669, 801, 969, 1044
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	5 cut(s)	285, 378, 504, 765, 815
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	1021
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	717
MunI	CAATTG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	29, 76, 416, 797, 1024
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
NlaIII	CATG	6 cut(s)	14, 255, 320, 503, 901, 1088
NlaIV	GGNNCC	2 cut(s)	594, 753
NmuCI	GTSAC	2 cut(s)	235, 471
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	503
PagI	TCATGA	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	49, 680
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	1 cut(s)	1020
PleI	GAGTC	2 cut(s)	521, 896
PpsI	GAGTC	2 cut(s)	521, 896
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	594, 753
PspPI	GGNCC	3 cut(s)	422, 656, 751
PstI	CTGCAG	1 cut(s)	861
PsuI	RGATCY	3 cut(s)	395, 922, 961
PvuII	CAGCTG	1 cut(s)	1021
RsaI	GTAC	2 cut(s)	510, 1061
RsaNI	GTAC	2 cut(s)	509, 1060
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	5 cut(s)	285, 378, 504, 765, 815
SatI	GCNGC	1 cut(s)	1019
Sau3AI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Sau96I	GGNCC	3 cut(s)	422, 656, 751
SchI	GAGTC	2 cut(s)	521, 897
ScrFI	CCNGG	1 cut(s)	717
SduI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
SfaNI	GCATC	4 cut(s)	258, 376, 969, 1014
SfcI	CTRYAG	2 cut(s)	405, 857
SinI	GGWCC	2 cut(s)	656, 751
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	6 cut(s)	175, 217, 512, 726, 757, 767
SsiI	CCGC	3 cut(s)	32, 295, 1048
SspI	AATATT	2 cut(s)	88, 192
SspMI	CTAG	2 cut(s)	609, 669
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	187, 406, 870
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	42
TasI	AATT	6 cut(s)	175, 217, 512, 726, 757, 767
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	49, 680
Tru1I	TTAA	5 cut(s)	285, 378, 504, 765, 815
Tru9I	TTAA	5 cut(s)	285, 378, 504, 765, 815
TscAI	CASTG	3 cut(s)	369, 480, 715
TseFI	GTSAC	2 cut(s)	235, 471
TseI	GCWGC	1 cut(s)	1018
Tsp45I	GTSAC	2 cut(s)	235, 471
TspDTI	ATGAA	2 cut(s)	954, 1026
TspRI	CASTG	3 cut(s)	369, 480, 715
Van91I	CCANNNNNTGG	1 cut(s)	898
VneI	GTGCAC	2 cut(s)	552, 789
VpaK11BI	GGWCC	2 cut(s)	656, 751
XceI	RCATGY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	2 cut(s)	609, 669
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.