Rw7G018720

Polycomb group protein EMBRYONIC FLOWER

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
20354031 .. 20361494
7464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018720.1

Sequence Viewer

Length: 1245 bp
ATGTGCCGTCATGATTTGTCAGCAGGCGAGGCGGTTTCAGTCGAAGAGAATCTCTTGATATATTGCAAGCCGGTTGAGCTCTACAATATTCTTCGCCCTCGCGCTTTGCATAATCCATTATTTCTTCGTAGATGTTTGCGATACGAAATCCAAGCAAAGCATAAACAGAGGTTCAATGCTGGGACTGTAATATTCAACTATAAGGACTACTGCAACACTTTACAAAAAACTGAAGTCACCGAAGACTTCTCATGTCCCTTTTGCTTGATGCAATGTGCAAGCTTTAAGGGTCTGCGGTATCACTTGTGCTCGTCGCATGACTTATTCAACTTTGAGTTTTGGGTAACCGGAGAGTATCGGGCAGTGAATGTTTCTGTTAAAACTGATGCATTGAGATCTGAGACTGTAGCAGAAGGAGCAGGCCCACAACTTCAAACATTCTTCTTCTGTTCAAGGCCAAGAAAACGCAGGTCACTGGACTGTGGTCAAAATAAAAAGCATGTTAATGTACAATTCTTGGAGTTGGACTCAAGTATACTAACGAGCGAATGTGCACAGAAAGGACTTTTGGTGAATGGTAATGGTGAGAAGGCTCCCGATCTGCTTCCTAGTGGGGTAGATATCCAGAATGGAAGGCAAGGACAAGAAAACAATGGTCCTCATAATCCTAGACCGATGGAATCTATAAAATGTGTTACATCAAGTTCCAGTGCTCCTGGTATTACAATTGCTGTTGCTCAACCTTCTCTGGATCCTAATTGTGTTAAATTGCAATCTGGAAGTGATTGTGCACCCCCTGCTAAAATGAGGAAGTTAAATGGAGAGCGATCAGACCCTAAAAACCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGCCCATGGAGTTGGAGCAAGTATTATCAGATCTGGATAGCGAAGATGAAGCTGATGATGACGTTGCAGATCTTGAAGATCGGAGGATGCTTGATGATTTTGTAGATGTTACCAAAGATGAAAAGCAGCTGATGCACCTTTGGAACTCGTTTGTGCGGAGGCAAAGTGTGCTGGCAGATGCTCATGTTCCCTGGGCATGTGAGGCATTTTCAAGACTTCATGGACAGGAGCTAGTCTCCTCTCCAGCTCTTTTCTGGTGTTGGAGATTATTCATGGTCAAACTTTGGAATCACGGTCTTCTTGATGCCTGCACAATCAACAGTTGCAATGTCATTCTCAATGGATACAAGAACTAG

Protein Analysis

414

Amino Acids

47.09

Weight (kDa)

6.67

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_SUZ12 PF23320 61 - 129 4.9e-31 Polycomb protein SUZ12-like, Zn domain
VEFS-Box PF09733 282 - 402 7e-55 VEFS-Box of polycomb protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 895
AccI GTMKAC 1 cut(s) 535
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 32, 295, 1045
AclWI GGATC 2 cut(s) 746, 759
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 895
AgsI TTSAA 7 cut(s) 175, 196, 328, 434, 453, 965, 1101
AjnI CCWGG 2 cut(s) 715, 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 6 cut(s) 79, 282, 941, 1018, 1120, 1136
AluI AGCT 6 cut(s) 79, 282, 941, 1018, 1120, 1136
Alw21I GWGCWC 5 cut(s) 81, 311, 556, 715, 793
Alw26I GTCTC 2 cut(s) 395, 1129
Alw44I GTGCAC 2 cut(s) 552, 789
AlwI GGATC 2 cut(s) 746, 759
AoxI GGCC 2 cut(s) 421, 455
ApaLI GTGCAC 2 cut(s) 552, 789
ApeKI GCWGC 1 cut(s) 1015
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 422, 656
AsuHPI GGTGA 3 cut(s) 229, 583, 596
AvaII GGWCC 1 cut(s) 656
BaeGI GKGCMC 2 cut(s) 556, 793
BamHI GGATCC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 2 cut(s) 249, 1178
Bbv12I GWGCWC 5 cut(s) 81, 311, 556, 715, 793
BbvI GCAGC 1 cut(s) 1027
BccI CCATC 1 cut(s) 670
BciT130I CCWGG 2 cut(s) 717, 1081
BciVI GTATCC 1 cut(s) 1226
BcoDI GTCTC 2 cut(s) 395, 1129
BfaI CTAG 4 cut(s) 609, 669, 1121, 1243
BfmI CTRYAG 2 cut(s) 405, 854
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 1226
BglII AGATCT 3 cut(s) 395, 919, 958
BisI GCNGC 1 cut(s) 1016
BlsI GCNGC 1 cut(s) 1017
Bme1390I CCNGG 2 cut(s) 717, 1081
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 2 cut(s) 422, 656
BmiI GGNNCC 2 cut(s) 594, 753
BmrFI CCNGG 2 cut(s) 717, 1081
BmsI GCATC 6 cut(s) 258, 376, 966, 1011, 1057, 1183
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 249, 1178
BplI GAGNNNNNCTC 4 cut(s) 512, 544, 1109, 1141
BpmI CTGGAG 1 cut(s) 1116
BpuEI CTTGAG 1 cut(s) 514
BsaJI CCNNGG 3 cut(s) 894, 1079, 1080
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 1039, 1069
Bsc4I CCNNNNNNNGG 1 cut(s) 895
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 480, 708
Bse3DI GCAATG 2 cut(s) 278, 1222
BseBI CCWGG 2 cut(s) 717, 1081
BseDI CCNNGG 3 cut(s) 894, 1079, 1080
BseGI GGATG 1 cut(s) 981
BseLI CCNNNNNNNGG 1 cut(s) 895
BseMI GCAATG 2 cut(s) 278, 1222
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 480, 708
BseRI GAGGAG 1 cut(s) 1117
BseSI GKGCMC 2 cut(s) 556, 793
BseXI GCAGC 1 cut(s) 1027
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 1183
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 423, 457
BsiHKAI GWGCWC 5 cut(s) 81, 311, 556, 715, 793
BsiSI CCGG 2 cut(s) 71, 348
BslFI GGGAC 2 cut(s) 196, 240
BslI CCNNNNNNNGG 1 cut(s) 895
BsmAI GTCTC 2 cut(s) 395, 1129
BsmFI GGGAC 2 cut(s) 196, 240
BsnI GGCC 2 cut(s) 423, 457
Bsp1286I GDGCHC 5 cut(s) 81, 311, 556, 715, 793
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 3 cut(s) 32, 295, 1045
BspANI GGCC 2 cut(s) 423, 457
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 594, 753
BspMAI CTGCAG 1 cut(s) 858
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 2 cut(s) 746, 759
BsrDI GCAATG 2 cut(s) 278, 1222
BsrFI RCCGGY 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 2 cut(s) 480, 708
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 894, 1079, 1080
BssMI GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
BssNAI GTATAC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 894
Bst1107I GTATAC 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 717, 1081
Bst4CI ACNGT 7 cut(s) 187, 406, 482, 845, 867, 1184, 1211
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 3 cut(s) 797, 1021, 1057
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 6 cut(s) 25, 68, 280, 421, 1062, 1198
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 894
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 981
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 7 cut(s) 398, 601, 754, 830, 922, 961, 970
BstMAI GTCTC 2 cut(s) 395, 1129
BstMBI GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
BstMWI GCNNNNNNNGC 7 cut(s) 29, 76, 416, 797, 1021, 1057, 1091
BstNI CCWGG 2 cut(s) 717, 1081
BstNSI RCATGY 2 cut(s) 503, 1089
BstPAI GACNNNNGTC 1 cut(s) 483
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 715, 1079
BstSFI CTRYAG 2 cut(s) 405, 854
BstSLI GKGCMC 2 cut(s) 556, 793
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 1027
BstV2I GAAGAC 2 cut(s) 249, 1178
BstX2I RGATCY 4 cut(s) 395, 751, 919, 958
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 4 cut(s) 395, 751, 919, 958
BstZ17I GTATAC 1 cut(s) 536
BsuI GTATCC 1 cut(s) 1226
BsuRI GGCC 2 cut(s) 423, 457
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 1 cut(s) 981
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 369, 473, 715
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 6 cut(s) 25, 68, 280, 421, 1062, 1198
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 422, 656
Csp6I GTAC 1 cut(s) 509
CviAII CATG 9 cut(s) 11, 252, 317, 500, 895, 1073, 1086, 1109, 1162
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 399
DpnI GATC 7 cut(s) 397, 600, 753, 829, 921, 960, 969
DpnII GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 894
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 656
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 715, 1079
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 894
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 894
FaeI CATG 9 cut(s) 14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
FaqI GGGAC 2 cut(s) 196, 240
FatI CATG 9 cut(s) 10, 251, 316, 499, 894, 1072, 1085, 1108, 1161
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 1016
FokI GGATG 1 cut(s) 988
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 1016
FspBI CTAG 4 cut(s) 609, 669, 1121, 1243
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 1016
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 1116
HaeIII GGCC 2 cut(s) 423, 457
HapII CCGG 2 cut(s) 71, 348
HhaI GCGC 1 cut(s) 104
Hin1II CATG 9 cut(s) 14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 5 cut(s) 49, 527, 680, 885, 1177
HpaII CCGG 2 cut(s) 71, 348
HphI GGTGA 3 cut(s) 229, 583, 596
Hpy166II GTNNAC 3 cut(s) 536, 554, 791
Hpy188I TCNGA 4 cut(s) 400, 832, 919, 972
Hpy8I GTNNAC 3 cut(s) 536, 554, 791
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 4 cut(s) 407, 583, 627, 753
HpyCH4III ACNGT 7 cut(s) 187, 406, 482, 845, 867, 1184, 1211
HpyCH4IV ACGT 1 cut(s) 951
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 76, 416, 797, 1021, 1057, 1091
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 951
Hsp92II CATG 9 cut(s) 14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
LmnI GCTCC 6 cut(s) 416, 598, 718, 855, 904, 1117
Lsp1109I GCAGC 1 cut(s) 1027
LweI GCATC 6 cut(s) 258, 376, 966, 1011, 1057, 1183
MaeI CTAG 4 cut(s) 609, 669, 1121, 1243
MaeII ACGT 1 cut(s) 951
MaeIII GTNAC 5 cut(s) 235, 343, 471, 694, 997
MalI GATC 7 cut(s) 397, 600, 753, 829, 921, 960, 969
MboI GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
MboII GAAGA 9 cut(s) 56, 83, 116, 254, 433, 436, 944, 977, 1178
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 4 cut(s) 395, 751, 919, 958
MhlI GDGCHC 5 cut(s) 81, 311, 556, 715, 793
MluCI AATT 4 cut(s) 512, 726, 757, 767
MlyI GAGTC 2 cut(s) 521, 894
MmeI TCCRAC 3 cut(s) 504, 882, 1130
MnlI CCTC 9 cut(s) 22, 108, 162, 669, 801, 966, 1041, 1084, 1138
Mph1103I ATGCAT 1 cut(s) 391
MseI TTAA 5 cut(s) 285, 378, 504, 765, 815
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 1018
MspI CCGG 2 cut(s) 71, 348
MspR9I CCNGG 2 cut(s) 717, 1081
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 2 cut(s) 717, 1081
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 7 cut(s) 29, 76, 416, 797, 1021, 1057, 1091
NcoI CCATGG 1 cut(s) 894
NdeII GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
NlaIII CATG 9 cut(s) 14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
NlaIV GGNNCC 2 cut(s) 594, 753
NmuCI GTSAC 2 cut(s) 235, 471
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 2 cut(s) 503, 1089
PagI TCATGA 1 cut(s) 10
PasI CCCWGGG 1 cut(s) 1080
PfeI GAWTC 3 cut(s) 49, 680, 1177
PflMI CCANNNNNTGG 1 cut(s) 895
PkrI GCNGC 1 cut(s) 1017
PleI GAGTC 2 cut(s) 521, 893
PpsI GAGTC 2 cut(s) 521, 893
PshAI GACNNNNGTC 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 715, 1079
PspEI GGTNACC 1 cut(s) 343
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 2 cut(s) 715, 1079
PspN4I GGNNCC 2 cut(s) 594, 753
PspPI GGNCC 2 cut(s) 422, 656
PstI CTGCAG 1 cut(s) 858
PsuI RGATCY 4 cut(s) 395, 751, 919, 958
PvuII CAGCTG 1 cut(s) 1018
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 5 cut(s) 285, 378, 504, 765, 815
SatI GCNGC 1 cut(s) 1016
Sau3AI GATC 7 cut(s) 395, 598, 751, 827, 919, 958, 967
Sau96I GGNCC 2 cut(s) 422, 656
SchI GAGTC 2 cut(s) 521, 894
ScrFI CCNGG 2 cut(s) 717, 1081
SduI GDGCHC 5 cut(s) 81, 311, 556, 715, 793
SfaNI GCATC 6 cut(s) 258, 376, 966, 1011, 1057, 1183
SfcI CTRYAG 2 cut(s) 405, 854
SinI GGWCC 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 4 cut(s) 512, 726, 757, 767
SsiI CCGC 3 cut(s) 32, 295, 1045
SspI AATATT 2 cut(s) 88, 192
SspMI CTAG 4 cut(s) 609, 669, 1121, 1243
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 715, 1079
StyI CCWWGG 1 cut(s) 894
TaaI ACNGT 7 cut(s) 187, 406, 482, 845, 867, 1184, 1211
TaiI ACGT 1 cut(s) 954
TaqI TCGA 1 cut(s) 42
TaqII GACCGA 1 cut(s) 688
TasI AATT 4 cut(s) 512, 726, 757, 767
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 3 cut(s) 49, 680, 1177
Tru1I TTAA 5 cut(s) 285, 378, 504, 765, 815
Tru9I TTAA 5 cut(s) 285, 378, 504, 765, 815
TscAI CASTG 3 cut(s) 369, 480, 715
TseFI GTSAC 2 cut(s) 235, 471
TseI GCWGC 1 cut(s) 1015
Tsp45I GTSAC 2 cut(s) 235, 471
TspDTI ATGAA 4 cut(s) 951, 1023, 1097, 1150
TspRI CASTG 3 cut(s) 369, 480, 715
Van91I CCANNNNNTGG 1 cut(s) 895
VneI GTGCAC 2 cut(s) 552, 789
VpaK11BI GGWCC 1 cut(s) 656
XceI RCATGY 2 cut(s) 503, 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 1140
XmiI GTMKAC 1 cut(s) 535
XspI CTAG 4 cut(s) 609, 669, 1121, 1243
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.