FvH4_5g19940

Polycomb group protein EMBRYONIC FLOWER

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
11745111 .. 11753576
8466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19940.t1

Sequence Viewer

Length: 1236 bp
ATGTGTCGTCATGATATGTCAGCAGGCGAGGCGGTCTCAATCGAAGAGAATCTGTTGATTTATTGCAAGCCAGTCGAGCTCTACAATATTCTTCGCCCTCGTGCTTTGCATAATCCTTTATTTCTTCGTAGATGTTTGCGATACAAAATCCAAGCAAAGCATAAGCAGAGGTTCAGTGCTGGGACTGTAATATTCAACTATAGGGACTACTGCAACACTTTACAAAAAACTGAAGTTACCGAAGACTTCTCATGTCCCTTTTGCTTGATGCAATGTGCAAGCTTTAAGGGTCTGCGGTATCACTTGTGCTCTTCACATGACTTGTTCAACTTTGATTTTTGGGTAACTGGAGAGTATCAGGCAGTGAATGTTTCTGTTAAAACTGATGCATTGAGATCTGAGAGTGTAGCAGAAGGCACAGGCCCACAACTTCGAACATTCTTCTTCTGTTCAAGGCCAAAGAAACGCAGGTCACTGGACTGTGGTCCAAATATAAAGCATGTTAATGTACAATTCTTGGAGTTGGACTCAAGTATACTAGCCAGCGAAGGTGTGCAGAAAGGAGTTTTGGTGAATGGTAATGGTGAGAAGGCTCCCGATCTGCTTCCCAGTGGGGTAGACACCCAGAATGAAAGGCAAGGACAAGACTACTATGGTCCTTATAATGCTAGACTGAAGGAATCCATAGAAAATGTTACATCAAGTTCCAGTGCTCCTGGTGTTGCTCAATCTTCACTGGATCTCAATTATATTAAATTGCAGTCTGGAAGTGATTGTGCACCCCCTGCAAAAATGAGGAAGTTAAATGGAGAGCGATCGGACCCTAAAAACAGCCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGCCCATGGAGTTGGAGCAAGTATTATCGGATCTGGATAGTGAGGATGAAGTTGATGATGACGTTGCAGATCTTGAAGATCGGAGGATGCTTGATGATTTTGTAGATGTTACCAAAGATGAAAAGCAGCTGATGCATCTTTGGAACTCTTTCGTGCGGAGGCAAAGTGTGCTGGCAGATGCTCATGTTCCCTGGGCATGTGAGGCATTTTCAAGACTTCATGGACAGGAGCTAGTCTCCTGTCCAGCTCTTTTCTGGTGTTGGAGGTTATTCATGATTAAACTTTGGAATCACGGTCTTCTTGATGCCTGCACAATGAATAGTTGCAATGCCATTCTCAATGGATACAAGAACTAG

Protein Analysis

412

Amino Acids

46.98

Weight (kDa)

6.47

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_SUZ12 PF23320 61 - 129 3.2e-31 Polycomb protein SUZ12-like, Zn domain
VEFS-Box PF09733 277 - 399 6.7e-55 VEFS-Box of polycomb protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
Acc36I ACCTGC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 886
AccI GTMKAC 2 cut(s) 535, 618
AciI CCGC 3 cut(s) 32, 295, 1036
AclWI GGATC 2 cut(s) 747, 918
AcuI CTGAAG 2 cut(s) 252, 695
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 886
AgsI TTSAA 5 cut(s) 196, 328, 453, 956, 1092
AjnI CCWGG 2 cut(s) 715, 1070
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 5 cut(s) 79, 282, 1009, 1111, 1127
AluI AGCT 5 cut(s) 79, 282, 1009, 1111, 1127
Alw21I GWGCWC 4 cut(s) 81, 311, 715, 781
Alw26I GTCTC 2 cut(s) 40, 1120
Alw44I GTGCAC 1 cut(s) 777
AlwI GGATC 2 cut(s) 747, 918
AoxI GGCC 2 cut(s) 421, 455
ApaLI GTGCAC 1 cut(s) 777
ApeKI GCWGC 1 cut(s) 1006
Asp700I GAANNNNTTC 1 cut(s) 1028
AspS9I GGNCC 4 cut(s) 422, 485, 656, 820
AsuHPI GGTGA 2 cut(s) 583, 596
AsuII TTCGAA 1 cut(s) 433
AvaII GGWCC 3 cut(s) 485, 656, 820
BaeGI GKGCMC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 81
BauI CACGAG 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 249, 1169
Bbv12I GWGCWC 4 cut(s) 81, 311, 715, 781
BbvI GCAGC 1 cut(s) 1018
BceAI ACGGC 1 cut(s) 819
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 2 cut(s) 717, 1072
BciVI GTATCC 1 cut(s) 1217
BcoDI GTCTC 2 cut(s) 40, 1120
BfaI CTAG 4 cut(s) 539, 669, 1112, 1234
BfmI CTRYAG 2 cut(s) 199, 845
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 1217
BglII AGATCT 2 cut(s) 395, 949
BisI GCNGC 1 cut(s) 1007
BlsI GCNGC 1 cut(s) 1008
Bme1390I CCNGG 2 cut(s) 717, 1072
Bme18I GGWCC 3 cut(s) 485, 656, 820
BmgT120I GGNCC 4 cut(s) 422, 485, 656, 820
BmiI GGNNCC 2 cut(s) 594, 822
BmrFI CCNGG 2 cut(s) 717, 1072
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 7 cut(s) 258, 376, 957, 1002, 1024, 1048, 1174
BmuI ACTGGG 1 cut(s) 603
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 249, 1169
BplI GAGNNNNNCTC 6 cut(s) 20, 52, 512, 544, 1100, 1132
BpmI CTGGAG 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 514
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 885, 1070, 1071
BsaXI ACNNNNNCTCC 4 cut(s) 555, 585, 1030, 1060
Bsc4I CCNNNNNNNGG 1 cut(s) 886
Bse1I ACTGG 6 cut(s) 71, 352, 480, 609, 708, 741
Bse3DI GCAATG 2 cut(s) 278, 1213
BseBI CCWGG 2 cut(s) 717, 1072
BseDI CCNNGG 3 cut(s) 885, 1070, 1071
BseGI GGATG 2 cut(s) 931, 972
BseLI CCNNNNNNNGG 1 cut(s) 886
BseMI GCAATG 2 cut(s) 278, 1213
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 6 cut(s) 71, 352, 480, 609, 708, 741
BseSI GKGCMC 1 cut(s) 781
BseXI GCAGC 1 cut(s) 1018
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 2 cut(s) 575, 1174
Bsh1285I CGRYCG 1 cut(s) 818
BshFI GGCC 2 cut(s) 423, 457
BsiEI CGRYCG 1 cut(s) 818
BsiHKAI GWGCWC 4 cut(s) 81, 311, 715, 781
BslFI GGGAC 3 cut(s) 196, 218, 240
BslI CCNNNNNNNGG 1 cut(s) 886
BsmAI GTCTC 2 cut(s) 40, 1120
BsmFI GGGAC 3 cut(s) 196, 218, 240
BsnI GGCC 2 cut(s) 423, 457
Bso31I GGTCTC 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 433
Bsp1286I GDGCHC 4 cut(s) 81, 311, 715, 781
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
Bsp19I CCATGG 1 cut(s) 885
BspACI CCGC 3 cut(s) 32, 295, 1036
BspANI GGCC 2 cut(s) 423, 457
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 2 cut(s) 10, 1152
BspLI GGNNCC 2 cut(s) 594, 822
BspMAI CTGCAG 1 cut(s) 849
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 2 cut(s) 747, 918
BspQI GCTCTTC 1 cut(s) 316
BspT104I TTCGAA 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 278, 1213
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 6 cut(s) 71, 352, 480, 609, 708, 741
BssECI CCNNGG 3 cut(s) 885, 1070, 1071
BssMI GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
BssNAI GTATAC 1 cut(s) 536
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 885
Bst1107I GTATAC 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 717, 1072
Bst4CI ACNGT 4 cut(s) 187, 482, 858, 1175
Bst6I CTCTTC 2 cut(s) 39, 316
BstAPI GCANNNNNTGC 3 cut(s) 785, 1012, 1048
BstAUI TGTACA 1 cut(s) 508
BstBI TTCGAA 1 cut(s) 433
BstC8I GCNNGC 6 cut(s) 25, 68, 280, 544, 1053, 1189
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 885
BstF5I GGATG 2 cut(s) 931, 972
BstKTI GATC 7 cut(s) 398, 601, 742, 818, 913, 952, 961
BstMAI GTCTC 2 cut(s) 40, 1120
BstMBI GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
BstMCI CGRYCG 1 cut(s) 818
BstMWI GCNNNNNNNGC 6 cut(s) 29, 76, 785, 1012, 1048, 1082
BstNI CCWGG 2 cut(s) 717, 1072
BstNSI RCATGY 2 cut(s) 503, 1080
BstPAI GACNNNNGTC 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 715, 1070
BstSFI CTRYAG 2 cut(s) 199, 845
BstSLI GKGCMC 1 cut(s) 781
BstV1I GCAGC 1 cut(s) 1018
BstV2I GAAGAC 2 cut(s) 249, 1169
BstX2I RGATCY 4 cut(s) 395, 739, 910, 949
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 4 cut(s) 395, 739, 910, 949
BstZ17I GTATAC 1 cut(s) 536
BsuI GTATCC 1 cut(s) 1217
BsuRI GGCC 2 cut(s) 423, 457
BtgI CCRYGG 1 cut(s) 885
BtsCI GGATG 2 cut(s) 931, 972
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 6 cut(s) 181, 369, 473, 616, 715, 734
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 6 cut(s) 25, 68, 280, 544, 1053, 1189
CciI TCATGA 2 cut(s) 10, 1152
Cfr13I GGNCC 4 cut(s) 422, 485, 656, 820
Csp6I GTAC 1 cut(s) 509
CviAII CATG 9 cut(s) 11, 252, 317, 500, 886, 1064, 1077, 1100, 1153
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 399
DpnI GATC 7 cut(s) 397, 600, 741, 817, 912, 951, 960
DpnII GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
Eam1104I CTCTTC 2 cut(s) 39, 316
EarI CTCTTC 2 cut(s) 39, 316
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 885
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 485, 656, 820
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 252, 695
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 715, 1070
EcoT14I CCWWGG 1 cut(s) 885
EcoT22I ATGCAT 2 cut(s) 391, 1017
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 885
FaeI CATG 9 cut(s) 14, 255, 320, 503, 889, 1067, 1080, 1103, 1156
FaqI GGGAC 3 cut(s) 196, 218, 240
FatI CATG 9 cut(s) 10, 251, 316, 499, 885, 1063, 1076, 1099, 1152
FblI GTMKAC 2 cut(s) 535, 618
Fnu4HI GCNGC 1 cut(s) 1007
FokI GGATG 2 cut(s) 938, 979
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 1007
FspBI CTAG 4 cut(s) 539, 669, 1112, 1234
GluI GCNGC 1 cut(s) 1007
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 423, 457
Hin1II CATG 9 cut(s) 14, 255, 320, 503, 889, 1067, 1080, 1103, 1156
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 5 cut(s) 49, 527, 680, 876, 1168
HphI GGTGA 2 cut(s) 583, 596
Hpy166II GTNNAC 3 cut(s) 536, 619, 779
Hpy188I TCNGA 4 cut(s) 400, 820, 910, 963
Hpy188III TCNNGA 8 cut(s) 11, 596, 765, 914, 953, 1092, 1153, 1181
Hpy8I GTNNAC 3 cut(s) 536, 619, 779
HpyAV CCTTC 4 cut(s) 407, 542, 583, 670
HpyCH4III ACNGT 4 cut(s) 187, 482, 858, 1175
HpyCH4IV ACGT 1 cut(s) 942
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 76, 785, 1012, 1048, 1082
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 942
Hsp92II CATG 9 cut(s) 14, 255, 320, 503, 889, 1067, 1080, 1103, 1156
Kzo9I GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 5 cut(s) 598, 718, 846, 895, 1108
Lsp1109I GCAGC 1 cut(s) 1018
LweI GCATC 7 cut(s) 258, 376, 957, 1002, 1024, 1048, 1174
MaeI CTAG 4 cut(s) 539, 669, 1112, 1234
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 5 cut(s) 235, 343, 471, 694, 988
MalI GATC 7 cut(s) 397, 600, 741, 817, 912, 951, 960
MboI GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
MflI RGATCY 4 cut(s) 395, 739, 910, 949
MhlI GDGCHC 4 cut(s) 81, 311, 715, 781
MluCI AATT 3 cut(s) 512, 745, 755
MlyI GAGTC 2 cut(s) 521, 885
MmeI TCCRAC 3 cut(s) 504, 873, 1121
MnlI CCTC 9 cut(s) 22, 108, 162, 789, 916, 957, 1032, 1075, 1137
Mph1103I ATGCAT 2 cut(s) 391, 1017
MroXI GAANNNNTTC 1 cut(s) 1028
MseI TTAA 6 cut(s) 285, 378, 504, 753, 803, 1158
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 1009
MspR9I CCNGG 2 cut(s) 717, 1072
MvaI CCWGG 2 cut(s) 717, 1072
MwoI GCNNNNNNNGC 6 cut(s) 29, 76, 785, 1012, 1048, 1082
NcoI CCATGG 1 cut(s) 885
NdeII GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
NlaIII CATG 9 cut(s) 14, 255, 320, 503, 889, 1067, 1080, 1103, 1156
NlaIV GGNNCC 2 cut(s) 594, 822
NmuCI GTSAC 1 cut(s) 471
NsiI ATGCAT 2 cut(s) 391, 1017
NspI RCATGY 2 cut(s) 503, 1080
NspV TTCGAA 1 cut(s) 433
PagI TCATGA 2 cut(s) 10, 1152
PasI CCCWGGG 1 cut(s) 1071
PciSI GCTCTTC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 1028
PfeI GAWTC 3 cut(s) 49, 680, 1168
PflMI CCANNNNNTGG 1 cut(s) 886
PkrI GCNGC 1 cut(s) 1008
Ple19I CGATCG 1 cut(s) 818
PleI GAGTC 2 cut(s) 521, 884
PpsI GAGTC 2 cut(s) 521, 884
PshAI GACNNNNGTC 1 cut(s) 483
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 715, 1070
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 2 cut(s) 715, 1070
PspN4I GGNNCC 2 cut(s) 594, 822
PspPI GGNCC 4 cut(s) 422, 485, 656, 820
PstI CTGCAG 1 cut(s) 849
PsuI RGATCY 4 cut(s) 395, 739, 910, 949
PvuI CGATCG 1 cut(s) 818
PvuII CAGCTG 1 cut(s) 1009
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 6 cut(s) 285, 378, 504, 753, 803, 1158
SatI GCNGC 1 cut(s) 1007
Sau3AI GATC 7 cut(s) 395, 598, 739, 815, 910, 949, 958
Sau96I GGNCC 4 cut(s) 422, 485, 656, 820
SchI GAGTC 2 cut(s) 521, 885
ScrFI CCNGG 2 cut(s) 717, 1072
SduI GDGCHC 4 cut(s) 81, 311, 715, 781
SfaNI GCATC 7 cut(s) 258, 376, 957, 1002, 1024, 1048, 1174
SfcI CTRYAG 2 cut(s) 199, 845
SfuI TTCGAA 1 cut(s) 433
SinI GGWCC 3 cut(s) 485, 656, 820
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 3 cut(s) 512, 745, 755
SsiI CCGC 3 cut(s) 32, 295, 1036
SspI AATATT 2 cut(s) 88, 192
SspMI CTAG 4 cut(s) 539, 669, 1112, 1234
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 715, 1070
StyI CCWWGG 1 cut(s) 885
TaaI ACNGT 4 cut(s) 187, 482, 858, 1175
TaiI ACGT 1 cut(s) 945
TaqI TCGA 3 cut(s) 42, 75, 433
TasI AATT 3 cut(s) 512, 745, 755
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 3 cut(s) 49, 680, 1168
Tru1I TTAA 6 cut(s) 285, 378, 504, 753, 803, 1158
Tru9I TTAA 6 cut(s) 285, 378, 504, 753, 803, 1158
TscAI CASTG 6 cut(s) 181, 369, 480, 616, 715, 741
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 1 cut(s) 1006
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 6 cut(s) 645, 942, 1014, 1088, 1141, 1211
TspRI CASTG 6 cut(s) 181, 369, 480, 616, 715, 741
Van91I CCANNNNNTGG 1 cut(s) 886
VneI GTGCAC 1 cut(s) 777
VpaK11BI GGWCC 3 cut(s) 485, 656, 820
XceI RCATGY 2 cut(s) 503, 1080
XcmI CCANNNNNNNNNTGG 1 cut(s) 1131
XmiI GTMKAC 2 cut(s) 535, 618
XmnI GAANNNNTTC 1 cut(s) 1028
XspI CTAG 4 cut(s) 539, 669, 1112, 1234
Zsp2I ATGCAT 2 cut(s) 391, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.