Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010458

Physical Location & Seq

Genomic Coordinates Forward (+)

48448856 .. 48456277

Gene Structure 7422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTGCCGTCATGATTTGTCAGCAGGCGAGGCGGTTTCAATCGAGGAGAATCTCTTGATATATTGCAAGCCGGTTGAGCTCTACAATATTCTTCGCCCTCGTGCTTTGCATAATCCTTTATTTCTTCGTAGATGTTTGCGATACGAAATCCAAGCAAAGCATAAACAGAGGTTCAATGCTGGGACTGTAATATTCAACTATAAGGACTACTGCAACACTTTACAAAAAACTGAAGTCACCGAAGACTTCTCATGTCCCTTTTGCTTAATGCAATGTGCAAGCTTTAAGGGTCTGCGGTATCACTTGTGCTCGTCGCATGACTTATTCAACTTTGAGTTTTGGATAACTGGAGAGTATCGGGCAGTGAATGTTTCTGTTAAAACTGATGCATTGAGATCTGAGACTGTAGCAGAAGGAGCAGGCCCACAACTTCAAACATTCTTCTTCTGTTCAAGGCCAAGAAAACGCAGGTCACTGGACTGTGGTCAAAATATAAAGCATGTTAATGTACAATTCTTGGAGTTGGACTCAAGTATACTAACGAGCGAAGGTGCACAGAAAGGACTTTTGGTGAATGGTAATAGTGAGAAGGCTCCCGATCTGCTTCCTAGTGGGGTAGATATCCAGAATGGAAGGCAAGGACAAGAAAACAATGGTCCTCATAATCCTAGACCGATGGAATCTATAAAATGTGTTACATCAAGTTCCAGTGCTCCTGGTATTACAATTGCTGTTGCTCAACCTTCTCTGGACCCTAATTGTGTTAAATTGCAATCTGGAAGTGATTGTGCACCCCCTGCTAAAATGAGGAAGTTAAATGGAGAGCGATCAGACCCTAAAAACCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGCCCATGGAGTTGGAGCAAGTATTGTCAGATCTGGATAGCGAAGATGAAGTTGATGATGATGTTGCAGATCTTGAAGATCGGAGGATGCTTGATGATTTTGTAGATGTTACCAAAGATGAAAAGCAGCTGATGCACCTTTGGAACTCGTTTGTGCGGAGGCAAAGTGTGCTGGCAGATGCTCATGTTCCCTGGGCATGTGAGGCATTTTCAAGACTTCATGGACAGGAGCTAGTCTCCTCTCCTGCTCTTTTCTGGTGTTGGAGATTATTCATGGTCAAACTTTGGAATCACGGTCTTCTTGATGCCTGCACAATCAATAGTTGCAATGTCATTCTCAATGGATACAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

415

Amino Acids

47.12

Weight (kDa)

6.5

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_SUZ12	PF23320	61 - 129	6.8e-31	Polycomb protein SUZ12-like, Zn domain
VEFS-Box	PF09733	282 - 402	3.4e-55	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16845 AT4G16845
fragaria_vesca	FvH4_5g19940 FvH4_5g19940
malus_domestica	MD04G1057300.v1.1 MD06G1050700.v1.1
prunus_persica	Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1 Prupe.5G060700_v2.0.a1
pyrus_communis	pycom04g05090 pycom06g04270
rosa_chinensis	RchiOBHm_Chr7g0204761
rosa_laevigata	RLG00000003435
rosa_multiflora	Rmu_sc0007104.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252840
rosa_rugosa	Rorug07G0085900
rosa_samantha	Rh7AG215900 Rh7BG213000 Rh7CG229100 Rh7DG223500
rosa_wichuraiana	Rw7G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	3 cut(s)	32, 295, 1045
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	895
AgsI	TTSAA	8 cut(s)	39, 175, 196, 328, 434, 453, 965, 1101
AjnI	CCWGG	2 cut(s)	715, 1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	4 cut(s)	79, 282, 1018, 1120
AluI	AGCT	4 cut(s)	79, 282, 1018, 1120
Alw21I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
Alw26I	GTCTC	2 cut(s)	395, 1129
Alw44I	GTGCAC	2 cut(s)	552, 789
AoxI	GGCC	2 cut(s)	421, 455
ApaLI	GTGCAC	2 cut(s)	552, 789
ApeKI	GCWGC	1 cut(s)	1015
AspS9I	GGNCC	3 cut(s)	422, 656, 751
AsuHPI	GGTGA	2 cut(s)	229, 583
AvaII	GGWCC	2 cut(s)	656, 751
BaeGI	GKGCMC	2 cut(s)	556, 793
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	249, 1178
Bbv12I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BbvI	GCAGC	1 cut(s)	1027
BccI	CCATC	1 cut(s)	670
BciT130I	CCWGG	2 cut(s)	717, 1081
BciVI	GTATCC	1 cut(s)	1226
BcoDI	GTCTC	2 cut(s)	395, 1129
BfaI	CTAG	4 cut(s)	609, 669, 1121, 1243
BfmI	CTRYAG	2 cut(s)	405, 854
BfuAI	ACCTGC	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	1226
BglII	AGATCT	3 cut(s)	395, 919, 958
BisI	GCNGC	1 cut(s)	1016
BlsI	GCNGC	1 cut(s)	1017
Bme1390I	CCNGG	2 cut(s)	717, 1081
Bme18I	GGWCC	2 cut(s)	656, 751
BmgT120I	GGNCC	3 cut(s)	422, 656, 751
BmiI	GGNNCC	2 cut(s)	594, 753
BmrFI	CCNGG	2 cut(s)	717, 1081
BmsI	GCATC	5 cut(s)	376, 966, 1011, 1057, 1183
BoxI	GACNNNNGTC	1 cut(s)	483
BpiI	GAAGAC	2 cut(s)	249, 1178
BplI	GAGNNNNNCTC	4 cut(s)	512, 544, 1109, 1141
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	514
BsaJI	CCNNGG	3 cut(s)	894, 1079, 1080
BsaXI	ACNNNNNCTCC	2 cut(s)	1039, 1069
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	352, 480, 708
Bse3DI	GCAATG	2 cut(s)	278, 1222
BseBI	CCWGG	2 cut(s)	717, 1081
BseDI	CCNNGG	3 cut(s)	894, 1079, 1080
BseGI	GGATG	1 cut(s)	981
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMI	GCAATG	2 cut(s)	278, 1222
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	3 cut(s)	352, 480, 708
BseRI	GAGGAG	2 cut(s)	59, 1117
BseSI	GKGCMC	2 cut(s)	556, 793
BseXI	GCAGC	1 cut(s)	1027
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	1183
BshFI	GGCC	2 cut(s)	423, 457
BsiHKAI	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	196, 240
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmAI	GTCTC	2 cut(s)	395, 1129
BsmFI	GGGAC	2 cut(s)	196, 240
BsnI	GGCC	2 cut(s)	423, 457
Bsp1286I	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	3 cut(s)	32, 295, 1045
BspANI	GGCC	2 cut(s)	423, 457
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	594, 753
BspMAI	CTGCAG	1 cut(s)	858
BspMI	ACCTGC	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	278, 1222
BsrFI	RCCGGY	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	352, 480, 708
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	894, 1079, 1080
BssMI	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
BssNAI	GTATAC	1 cut(s)	536
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	894
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	717, 1081
Bst4CI	ACNGT	6 cut(s)	187, 406, 482, 845, 867, 1184
BstAPI	GCANNNNNTGC	3 cut(s)	797, 1021, 1057
BstAUI	TGTACA	1 cut(s)	508
BstC8I	GCNNGC	6 cut(s)	25, 68, 280, 421, 1062, 1198
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	1 cut(s)	981
BstKTI	GATC	6 cut(s)	398, 601, 830, 922, 961, 970
BstMAI	GTCTC	2 cut(s)	395, 1129
BstMBI	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 76, 416, 797, 1021, 1057, 1091
BstNI	CCWGG	2 cut(s)	717, 1081
BstNSI	RCATGY	2 cut(s)	503, 1089
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	715, 1079
BstSFI	CTRYAG	2 cut(s)	405, 854
BstSLI	GKGCMC	2 cut(s)	556, 793
BstV1I	GCAGC	1 cut(s)	1027
BstV2I	GAAGAC	2 cut(s)	249, 1178
BstX2I	RGATCY	3 cut(s)	395, 919, 958
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	3 cut(s)	395, 919, 958
BstZ17I	GTATAC	1 cut(s)	536
BsuI	GTATCC	1 cut(s)	1226
BsuRI	GGCC	2 cut(s)	423, 457
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	1 cut(s)	981
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	369, 473, 715
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	6 cut(s)	25, 68, 280, 421, 1062, 1198
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	422, 656, 751
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	9 cut(s)	11, 252, 317, 500, 895, 1073, 1086, 1109, 1162
CviJI	RGCY	9 cut(s)	70, 79, 282, 423, 457, 593, 892, 1018, 1120
CviKI_1	RGCY	9 cut(s)	70, 79, 282, 423, 457, 593, 892, 1018, 1120
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	6 cut(s)	397, 600, 829, 921, 960, 969
DpnII	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	894
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	656, 751
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	715, 1079
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	894
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	894
FaeI	CATG	9 cut(s)	14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
FaqI	GGGAC	2 cut(s)	196, 240
FatI	CATG	9 cut(s)	10, 251, 316, 499, 894, 1072, 1085, 1108, 1161
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	1016
FokI	GGATG	1 cut(s)	988
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	1016
FspBI	CTAG	4 cut(s)	609, 669, 1121, 1243
GluI	GCNGC	1 cut(s)	1016
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	423, 457
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	9 cut(s)	14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	49, 527, 680, 885, 1177
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	229, 583
Hpy166II	GTNNAC	3 cut(s)	536, 554, 791
Hpy188I	TCNGA	4 cut(s)	400, 832, 919, 972
Hpy8I	GTNNAC	3 cut(s)	536, 554, 791
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	407, 542, 583, 627, 753
HpyCH4III	ACNGT	6 cut(s)	187, 406, 482, 845, 867, 1184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 76, 416, 797, 1021, 1057, 1091
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	9 cut(s)	14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
Kzo9I	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
LmnI	GCTCC	6 cut(s)	416, 598, 718, 855, 904, 1117
Lsp1109I	GCAGC	1 cut(s)	1027
LweI	GCATC	5 cut(s)	376, 966, 1011, 1057, 1183
MaeI	CTAG	4 cut(s)	609, 669, 1121, 1243
MaeIII	GTNAC	4 cut(s)	235, 471, 694, 997
MalI	GATC	6 cut(s)	397, 600, 829, 921, 960, 969
MboI	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
MboII	GAAGA	8 cut(s)	83, 116, 254, 433, 436, 944, 977, 1178
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	3 cut(s)	395, 919, 958
MhlI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
MluCI	AATT	4 cut(s)	512, 726, 757, 767
MlyI	GAGTC	2 cut(s)	521, 894
MmeI	TCCRAC	3 cut(s)	504, 882, 1130
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	6 cut(s)	266, 285, 378, 504, 765, 815
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	1018
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	717, 1081
MunI	CAATTG	1 cut(s)	726
MvaI	CCWGG	2 cut(s)	717, 1081
MwoI	GCNNNNNNNGC	7 cut(s)	29, 76, 416, 797, 1021, 1057, 1091
NcoI	CCATGG	1 cut(s)	894
NdeII	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
NlaIII	CATG	9 cut(s)	14, 255, 320, 503, 898, 1076, 1089, 1112, 1165
NlaIV	GGNNCC	2 cut(s)	594, 753
NmuCI	GTSAC	2 cut(s)	235, 471
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	503, 1089
PagI	TCATGA	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	1080
PfeI	GAWTC	3 cut(s)	49, 680, 1177
PflMI	CCANNNNNTGG	1 cut(s)	895
PkrI	GCNGC	1 cut(s)	1017
PleI	GAGTC	2 cut(s)	521, 893
PpsI	GAGTC	2 cut(s)	521, 893
PshAI	GACNNNNGTC	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	715, 1079
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	715, 1079
PspN4I	GGNNCC	2 cut(s)	594, 753
PspPI	GGNCC	3 cut(s)	422, 656, 751
PstI	CTGCAG	1 cut(s)	858
PsuI	RGATCY	3 cut(s)	395, 919, 958
PvuII	CAGCTG	1 cut(s)	1018
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	6 cut(s)	266, 285, 378, 504, 765, 815
SatI	GCNGC	1 cut(s)	1016
Sau3AI	GATC	6 cut(s)	395, 598, 827, 919, 958, 967
Sau96I	GGNCC	3 cut(s)	422, 656, 751
SchI	GAGTC	2 cut(s)	521, 894
ScrFI	CCNGG	2 cut(s)	717, 1081
SduI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
SetI	ASST	9 cut(s)	81, 173, 284, 473, 553, 745, 1020, 1029, 1122
SfaNI	GCATC	5 cut(s)	376, 966, 1011, 1057, 1183
SfcI	CTRYAG	2 cut(s)	405, 854
SinI	GGWCC	2 cut(s)	656, 751
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	4 cut(s)	512, 726, 757, 767
SsiI	CCGC	3 cut(s)	32, 295, 1045
SspI	AATATT	2 cut(s)	88, 192
SspMI	CTAG	4 cut(s)	609, 669, 1121, 1243
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	715, 1079
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	6 cut(s)	187, 406, 482, 845, 867, 1184
TaqI	TCGA	1 cut(s)	42
TaqII	GACCGA	1 cut(s)	688
TasI	AATT	4 cut(s)	512, 726, 757, 767
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	3 cut(s)	49, 680, 1177
Tru1I	TTAA	6 cut(s)	266, 285, 378, 504, 765, 815
Tru9I	TTAA	6 cut(s)	266, 285, 378, 504, 765, 815
TscAI	CASTG	3 cut(s)	369, 480, 715
TseFI	GTSAC	2 cut(s)	235, 471
TseI	GCWGC	1 cut(s)	1015
Tsp45I	GTSAC	2 cut(s)	235, 471
TspDTI	ATGAA	4 cut(s)	951, 1023, 1097, 1150
TspRI	CASTG	3 cut(s)	369, 480, 715
Van91I	CCANNNNNTGG	1 cut(s)	895
VneI	GTGCAC	2 cut(s)	552, 789
VpaK11BI	GGWCC	2 cut(s)	656, 751
XceI	RCATGY	2 cut(s)	503, 1089
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	4 cut(s)	609, 669, 1121, 1243
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.