Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Forward (+)

9637963 .. 9641994

Gene Structure 4032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGAGTTCACTGGTACTTGGAATTAAGATGATTGATCAGTTCATCAACTTTGTAATTCGACCTCCTAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGAGAAGGAGTTTAGCCTCGGTGGCACAAAGTGTAAAAGACAAGACTTGGAGCTTACAAATTCGAGGGGTCACACTTTGCGTTGCAGTCATTATGTTCCCTCATCTTCTCGGGAGGATACTCCTCTCCCCTGTGTTATATACTGTCATGGCAATAGTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGAAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTGCAGTTACCAGCCTTCTCTATGGAGCAGAAGATCCTTCAATTGCTGGAATGGTCCTAGACAGTGCATTTTCAAACTTATTTGATCTGATGATGGAACTAGTGGATGTCTACAAAATCCGACTTCCGAAATTCACAGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGGCGAAGTTTAATATTATGGATCTCAATTGTGTTAAGGTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCGGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCCCGCCTCCAATTTCTTCATCTTACTCATCTAAACTTGAAAGTTATTACAGTTTGGGAGATGTCAATAGCGCTACTGGTTTGGATGAGAGTTTTCTGTATGAGATCATATCTGGTCTTCGTTCGGCATGTATCGATGTTGCAAGTTCTTCTTCTGCACCTCCTGCCCCTCTAACCACAAAGCCAACGAATGAGCTCCTTTCAGAAGCTATGCCCATGATAGATACAGATACCGTGCTTGTGGAAGATAATGATCACAACGTGGACGACCCTGAAAACTTCGAGGGAAAGCGTATTGATCAGTTTGAAGAAGGCTGTTCATTTACAAGCTCCAACAGGGAAAGCTGGGGCAGATGCTCTTCACTAGGAGGCACTGAAGAAGATGAGAGTTTGACAGCTGGCGAGGGTGATCAGGTCGAGAAAACTGCTGATGTAAACACGGAACGAAAGCCAAGAGATTCTAGTAGAGAAGAAGAAGAAGAAGACAGTAAGGAGAAGAAGATTAAGAACGGAGGTGAAACAGATGCAAAGAAGCCTAGACACGAAAAATTGGAAAGATTGGAGGCCTTTAGCAAAAGACTGCGGCATTACATCCTAAAGCGAGTAAACCATAGAAGACATCGTTCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

502

Amino Acids

56.41

Weight (kDa)

5.64

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S15	PF02129	58 - 183	5.9e-06	X-Pro dipeptidyl-peptidase (S15 family)
Abhydrolase_1	PF00561	76 - 188	2.3e-08	alpha/beta hydrolase fold
Hydrolase_4	PF12146	77 - 183	9.1e-10	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	826
AciI	CCGC	6 cut(s)	625, 726, 779, 830, 881, 1459
AclWI	GGATC	3 cut(s)	74, 491, 672
AcsI	RAATTY	3 cut(s)	157, 593, 734
AcuI	CTGAAG	1 cut(s)	1272
AdeI	CACNNNGTG	2 cut(s)	129, 1138
AfaI	GTAC	2 cut(s)	15, 620
AfeI	AGCGCT	1 cut(s)	949
AgsI	TTSAA	4 cut(s)	504, 537, 917, 1184
AhlI	ACTAGT	1 cut(s)	562
AluBI	AGCT	7 cut(s)	151, 707, 1072, 1085, 1206, 1221, 1274
AluI	AGCT	7 cut(s)	151, 707, 1072, 1085, 1206, 1221, 1274
Alw21I	GWGCWC	1 cut(s)	1074
Alw26I	GTCTC	2 cut(s)	723, 777
AlwI	GGATC	3 cut(s)	74, 491, 672
Ama87I	CYCGRG	2 cut(s)	207, 331
Aor51HI	AGCGCT	1 cut(s)	949
AoxI	GGCC	1 cut(s)	1440
ApoI	RAATTY	3 cut(s)	157, 593, 734
AspA2I	CCTAGG	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	828, 950
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	6 cut(s)	310, 365, 821, 1295, 1403, 1494
AvaI	CYCGRG	2 cut(s)	207, 331
AvaII	GGWCC	1 cut(s)	517
AvrII	CCTAGG	1 cut(s)	65
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BanII	GRGCYC	1 cut(s)	1074
BbsI	GAAGAC	3 cut(s)	986, 1365, 1498
Bbv12I	GWGCWC	1 cut(s)	1074
BccI	CCATC	3 cut(s)	307, 550, 800
BcgI	CGANNNNNNTGC	2 cut(s)	1283, 1317
BciVI	GTATCC	2 cut(s)	208, 442
BclI	TGATCA	6 cut(s)	34, 85, 811, 1129, 1174, 1285
BcoDI	GTCTC	2 cut(s)	723, 777
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	6 cut(s)	66, 521, 563, 1241, 1338, 1413
BfoI	RGCGCY	1 cut(s)	951
BfuI	GTATCC	2 cut(s)	208, 442
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	2 cut(s)	626, 1460
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	2 cut(s)	627, 1461
Bme18I	GGWCC	1 cut(s)	517
BmeT110I	CYCGRG	2 cut(s)	207, 331
BmgT120I	GGNCC	1 cut(s)	517
BmsI	GCATC	3 cut(s)	259, 1220, 1390
BpiI	GAAGAC	3 cut(s)	986, 1365, 1498
BpuEI	CTTGAG	2 cut(s)	377, 752
Bsa29I	ATCGAT	1 cut(s)	1011
BsaBI	GATNNNNATC	3 cut(s)	84, 810, 1128
BsaJI	CCNNGG	3 cut(s)	65, 115, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	2 cut(s)	15, 958
Bse8I	GATNNNNATC	3 cut(s)	84, 810, 1128
BseCI	ATCGAT	1 cut(s)	1011
BseDI	CCNNGG	3 cut(s)	65, 115, 367
BseGI	GGATG	6 cut(s)	263, 391, 574, 738, 967, 1467
BseJI	GATNNNNATC	3 cut(s)	84, 810, 1128
BseMII	CTCAG	3 cut(s)	63, 339, 404
BseNI	ACTGG	2 cut(s)	15, 958
BseRI	GAGGAG	2 cut(s)	210, 284
BseYI	CCCAGC	1 cut(s)	1221
BsgI	GTGCAG	3 cut(s)	486, 635, 1017
Bsh1236I	CGCG	1 cut(s)	826
BshFI	GGCC	1 cut(s)	1442
BshVI	ATCGAT	1 cut(s)	1011
BsiHKAI	GWGCWC	1 cut(s)	1074
BsiHKCI	CYCGRG	2 cut(s)	207, 331
BslFI	GGGAC	1 cut(s)	465
BsmAI	GTCTC	2 cut(s)	723, 777
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	1442
BsoBI	CYCGRG	2 cut(s)	207, 331
Bsp1286I	GDGCHC	1 cut(s)	1074
BspACI	CCGC	6 cut(s)	625, 726, 779, 830, 881, 1459
BspANI	GGCC	1 cut(s)	1442
BspCNI	CTCAG	3 cut(s)	64, 340, 405
BspDI	ATCGAT	1 cut(s)	1011
BspFNI	CGCG	1 cut(s)	826
BspPI	GGATC	3 cut(s)	74, 491, 672
BspQI	GCTCTTC	1 cut(s)	1240
BsrI	ACTGG	2 cut(s)	15, 958
BssECI	CCNNGG	3 cut(s)	65, 115, 367
BssT1I	CCWWGG	2 cut(s)	65, 367
Bst4CI	ACNGT	8 cut(s)	242, 313, 400, 527, 601, 929, 1111, 1364
Bst6I	CTCTTC	2 cut(s)	826, 1240
BstAPI	GCANNNNNTGC	2 cut(s)	622, 1040
BstC8I	GCNNGC	6 cut(s)	374, 720, 724, 830, 881, 1276
BstDEI	CTNAG	3 cut(s)	72, 348, 413
BstF5I	GGATG	6 cut(s)	263, 391, 574, 738, 967, 1467
BstFNI	CGCG	1 cut(s)	826
BstH2I	RGCGCY	1 cut(s)	951
BstHHI	GCGC	2 cut(s)	828, 950
BstMAI	GTCTC	2 cut(s)	723, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 278, 622, 1040
BstNSI	RCATGY	3 cut(s)	625, 722, 1008
BstUI	CGCG	1 cut(s)	826
BstV2I	GAAGAC	3 cut(s)	986, 1365, 1498
BstX2I	RGATCY	2 cut(s)	496, 664
BstYI	RGATCY	2 cut(s)	496, 664
Bsu15I	ATCGAT	1 cut(s)	1011
BsuI	GTATCC	2 cut(s)	208, 442
BsuRI	GGCC	1 cut(s)	1442
BsuTUI	ATCGAT	1 cut(s)	1011
BtsCI	GGATG	6 cut(s)	263, 391, 574, 738, 967, 1467
BtsIMutI	CAGTG	3 cut(s)	8, 532, 1248
Cac8I	GCNNGC	6 cut(s)	374, 720, 724, 830, 881, 1276
CfoI	GCGC	2 cut(s)	828, 950
Cfr13I	GGNCC	1 cut(s)	517
ClaI	ATCGAT	1 cut(s)	1011
Csp6I	GTAC	2 cut(s)	14, 619
CviAII	CATG	6 cut(s)	245, 377, 622, 719, 1005, 1093
CviQI	GTAC	2 cut(s)	14, 619
DdeI	CTNAG	3 cut(s)	72, 348, 413
DraIII	CACNNNGTG	2 cut(s)	129, 1138
Eam1104I	CTCTTC	2 cut(s)	826, 1240
EarI	CTCTTC	2 cut(s)	826, 1240
Ecl136II	GAGCTC	1 cut(s)	1072
Eco130I	CCWWGG	2 cut(s)	65, 367
Eco147I	AGGCCT	1 cut(s)	1442
Eco24I	GRGCYC	1 cut(s)	1074
Eco47I	GGWCC	1 cut(s)	517
Eco47III	AGCGCT	1 cut(s)	949
Eco53kI	GAGCTC	1 cut(s)	1072
Eco57I	CTGAAG	1 cut(s)	1272
Eco88I	CYCGRG	2 cut(s)	207, 331
EcoICRI	GAGCTC	1 cut(s)	1072
EcoT14I	CCWWGG	2 cut(s)	65, 367
EcoT38I	GRGCYC	1 cut(s)	1074
ErhI	CCWWGG	2 cut(s)	65, 367
FaeI	CATG	6 cut(s)	248, 380, 625, 722, 1008, 1096
FalI	AAGNNNNNCTT	2 cut(s)	1012, 1044
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	6 cut(s)	244, 376, 621, 718, 1004, 1092
FauI	CCCGC	3 cut(s)	772, 837, 888
FbaI	TGATCA	6 cut(s)	34, 85, 811, 1129, 1174, 1285
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	626, 1460
FokI	GGATG	6 cut(s)	270, 398, 581, 725, 974, 1454
FriOI	GRGCYC	1 cut(s)	1074
Fsp4HI	GCNGC	2 cut(s)	626, 1460
FspBI	CTAG	6 cut(s)	66, 521, 563, 1241, 1338, 1413
GlaI	GCGC	2 cut(s)	827, 949
GluI	GCNGC	2 cut(s)	626, 1460
GsaI	CCCAGC	1 cut(s)	1225
HaeII	RGCGCY	1 cut(s)	951
HaeIII	GGCC	1 cut(s)	1442
HhaI	GCGC	2 cut(s)	828, 950
Hin1II	CATG	6 cut(s)	248, 380, 625, 722, 1008, 1096
Hin6I	GCGC	2 cut(s)	826, 948
HinP1I	GCGC	2 cut(s)	826, 948
HinfI	GANTC	2 cut(s)	845, 1334
HphI	GGTGA	6 cut(s)	310, 365, 821, 1295, 1403, 1494
Hpy166II	GTNNAC	6 cut(s)	8, 574, 1141, 1312, 1483, 1502
Hpy188I	TCNGA	7 cut(s)	349, 552, 584, 591, 639, 757, 1081
Hpy188III	TCNNGA	4 cut(s)	83, 209, 394, 1294
Hpy8I	GTNNAC	6 cut(s)	8, 574, 1141, 1312, 1483, 1502
HpyAV	CCTTC	5 cut(s)	97, 376, 488, 510, 1181
HpyCH4III	ACNGT	8 cut(s)	242, 313, 400, 527, 601, 929, 1111, 1364
HpyCH4IV	ACGT	1 cut(s)	1137
HpyCH4V	TGCA	9 cut(s)	183, 272, 467, 530, 616, 722, 1019, 1034, 1403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 278, 622, 1040
HpyF3I	CTNAG	3 cut(s)	72, 348, 413
HpySE526I	ACGT	1 cut(s)	1137
Hsp92II	CATG	6 cut(s)	248, 380, 625, 722, 1008, 1096
HspAI	GCGC	2 cut(s)	826, 948
Ksp22I	TGATCA	6 cut(s)	34, 85, 811, 1129, 1174, 1285
LguI	GCTCTTC	1 cut(s)	1240
LmnI	GCTCC	4 cut(s)	148, 488, 1077, 1211
LweI	GCATC	3 cut(s)	259, 1220, 1390
MaeI	CTAG	6 cut(s)	66, 521, 563, 1241, 1338, 1413
MaeII	ACGT	1 cut(s)	1137
MaeIII	GTNAC	2 cut(s)	167, 469
MfeI	CAATTG	2 cut(s)	504, 670
MflI	RGATCY	2 cut(s)	496, 664
MhlI	GDGCHC	1 cut(s)	1074
MmeI	TCCRAC	3 cut(s)	607, 766, 1233
MseI	TTAA	5 cut(s)	24, 603, 654, 678, 1380
MspA1I	CMGCKG	1 cut(s)	1274
MunI	CAATTG	2 cut(s)	504, 670
MvnI	CGCG	1 cut(s)	826
MwoI	GCNNNNNNNGC	4 cut(s)	120, 278, 622, 1040
NlaIII	CATG	6 cut(s)	248, 380, 625, 722, 1008, 1096
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	3 cut(s)	625, 722, 1008
PaeI	GCATGC	1 cut(s)	722
PceI	AGGCCT	1 cut(s)	1442
PciSI	GCTCTTC	1 cut(s)	1240
PfeI	GAWTC	2 cut(s)	845, 1334
PkrI	GCNGC	2 cut(s)	627, 1461
Psp124BI	GAGCTC	1 cut(s)	1074
PspFI	CCCAGC	1 cut(s)	1221
PspPI	GGNCC	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	496, 664
PvuII	CAGCTG	1 cut(s)	1274
RsaI	GTAC	2 cut(s)	15, 620
RsaNI	GTAC	2 cut(s)	14, 619
SacI	GAGCTC	1 cut(s)	1074
SapI	GCTCTTC	1 cut(s)	1240
SaqAI	TTAA	5 cut(s)	24, 603, 654, 678, 1380
SatI	GCNGC	2 cut(s)	626, 1460
Sau96I	GGNCC	1 cut(s)	517
SduI	GDGCHC	1 cut(s)	1074
SfaNI	GCATC	3 cut(s)	259, 1220, 1390
SinI	GGWCC	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	392, 767
SmoI	CTYRAG	2 cut(s)	392, 767
SpeI	ACTAGT	1 cut(s)	562
SphI	GCATGC	1 cut(s)	722
SseBI	AGGCCT	1 cut(s)	1442
SsiI	CCGC	6 cut(s)	625, 726, 779, 830, 881, 1459
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	6 cut(s)	66, 521, 563, 1241, 1338, 1413
SstI	GAGCTC	1 cut(s)	1074
StuI	AGGCCT	1 cut(s)	1442
StyI	CCWWGG	2 cut(s)	65, 367
TaaI	ACNGT	8 cut(s)	242, 313, 400, 527, 601, 929, 1111, 1364
TaiI	ACGT	1 cut(s)	1140
TaqI	TCGA	5 cut(s)	58, 161, 1011, 1158, 1293
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	2 cut(s)	628, 1462
TfiI	GAWTC	2 cut(s)	845, 1334
Tru1I	TTAA	5 cut(s)	24, 603, 654, 678, 1380
Tru9I	TTAA	5 cut(s)	24, 603, 654, 678, 1380
TscAI	CASTG	3 cut(s)	15, 532, 1255
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	31, 727, 885, 1185
TspGWI	ACGGA	2 cut(s)	1331, 1401
TspRI	CASTG	3 cut(s)	15, 532, 1255
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	3 cut(s)	157, 593, 734
XceI	RCATGY	3 cut(s)	625, 722, 1008
XmaJI	CCTAGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	6 cut(s)	66, 521, 563, 1241, 1338, 1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.