Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Forward (+)

91112 .. 99329

Gene Structure 8218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G000500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGATCGATCAGTTCATTAATTTTGTCATTCGCCCTCCCAGGGCAGAGTATAACCCGGATCAATATCTTTGGGAGAGGGATTTCACTCTTGCAGGCAGAACATACATACGACAAGACTTGGAGCTCACGAATGCTAGGGGACATACGTTGCGTTGCAGTCATTATCTGCCTTCACCTTTCCCCGAAGACGCTTCTCTTCCTTGTGTTATATACTGCCATGGAAACAGTGGATGTAGGGCAGATGCAAATGAAGCTGCTGTAATGCTTCTTCCATCAAATATCACCGTTTTTACTCTTGATTTTTCGGGTTCAGGCTTATCTGATGGTGACTATGTCAGCCTTGGTTGGCATGAGAGAGATGACCTCAAGGTTGTGGTTTCATATTTAAGAAGCAACAAACAAATCTCGCGTATAGGTCTTTGGGGGCGATCTATGGGTGCAGTTACATGCCTTCTTTATGGAGCAGAAGACCCTTCCATAGCTGGAATGGTGTTGGATAGTGCCTTTTCAAACTTGTATGTTCTAATGATGGAGCTAGTTGATGTGTACAAGATCCGTCTTCCTAAATTTACAGTTAAGATGGCAGTACAATACATGCGTCGGATAATTGAGAAGAAGGCAAAGTTCGATATCATGGATCTTAATTGCTTGCAGGTTTCGTCCAAAACATTCATTCCTGCTTTATTCGGACATGCTAAGGATGACAAATTTATCCCAAACCATCATTCTGACCTTATCTACAAGTCTTATGCGGGGGACAAAAATATTATATATTTTGATGGTGATCACAACTCTTCTCGGCCCCAATTTTATTATGATTCAGTTTCCATTTTCTTCTACAATGTTCTTCATCCCCCGCAAATTTCTTCTCATTCATGTAAGCTTGAGAAATATTATGATTTAGGGGATTTGAAGATTGGTGCTGGTTTGGATGAGGGCTTGTTATATGAGATAATCACTGGCGTTCATTCTGCGGGTACTGATGTTGCAAGTTCATCTTCTGCTCCTCCTGCCATTTCAACTACAAAATGTGTGGGCGAACTTCTTTCTGAAATTGCACCAGTGACTACTGTAGTTGATTCTGTGCATGAGGAAGCTGACATACTTAGTAGTCATGAACCATCACATCTAGAGGACCAGCCTAATGATCAGAATGAAGAATGTTGTTCATATACAAGCTCAAATAGAGAGAGTTGGGGCAGATGCTCTTCATTAGGAGGCAGTGATGAAGAATCTTCTGCTGATTGCACAGCTGCTGACAGCAGGCATCAGAAGACTCTTAAGGTGCTCACGATGCCTCTTCGATGCATGCAACAAAAATCATCAGAGCTAAAAAAGGAGGAAAAGAAAAAGAAGAAAGTTCCCATTGTTCCAAAGAAGCCCAAAAGTGAGAAATTTGAAAAGTTAGAGGCCCTTAGCAAACGGCTGCGTCTTTGCATCCTTAAGCGAGTAAACCATTGTAGACATCCCACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

493

Amino Acids

55.28

Weight (kDa)

6.39

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	1462
AccII	CGCG	1 cut(s)	409
AciI	CCGC	3 cut(s)	752, 857, 974
AclWI	GGATC	3 cut(s)	66, 547, 645
AcsI	RAATTY	4 cut(s)	566, 707, 861, 1394
AfaI	GTAC	3 cut(s)	548, 588, 979
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflII	CTTAAG	2 cut(s)	1280, 1442
AgsI	TTSAA	4 cut(s)	510, 913, 1020, 1400
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	709, 741
AluBI	AGCT	9 cut(s)	124, 254, 482, 535, 883, 1097, 1179, 1253, 1330
AluI	AGCT	9 cut(s)	124, 254, 482, 535, 883, 1097, 1179, 1253, 1330
Alw21I	GWGCWC	2 cut(s)	126, 1290
AlwI	GGATC	3 cut(s)	66, 547, 645
AlwNI	CAGNNNCTG	1 cut(s)	1256
AoxI	GGCC	2 cut(s)	800, 1410
ApeKI	GCWGC	3 cut(s)	254, 1253, 1426
ApoI	RAATTY	4 cut(s)	566, 707, 861, 1394
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	801, 1135, 1411
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	4 cut(s)	165, 274, 338, 794
AvaII	GGWCC	1 cut(s)	1135
BaeI	ACNNNNGTAYC	2 cut(s)	969, 1002
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	4 cut(s)	252, 284, 1086, 1118
BbsI	GAAGAC	4 cut(s)	192, 474, 551, 1280
Bbv12I	GWGCWC	2 cut(s)	126, 1290
BbvI	GCAGC	3 cut(s)	241, 1240, 1413
BccI	CCATC	7 cut(s)	280, 317, 523, 574, 729, 773, 1129
BceAI	ACGGC	1 cut(s)	1439
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	2 cut(s)	784, 1147
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	3 cut(s)	135, 536, 1130
BfmI	CTRYAG	1 cut(s)	1071
BfrI	CTTAAG	2 cut(s)	1280, 1442
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	3 cut(s)	255, 1254, 1427
BlsI	GCNGC	3 cut(s)	256, 1255, 1428
Bme1390I	CCNGG	2 cut(s)	40, 56
Bme18I	GGWCC	1 cut(s)	1135
BmgT120I	GGNCC	3 cut(s)	801, 1135, 1411
BmiI	GGNNCC	1 cut(s)	803
BmrFI	CCNGG	2 cut(s)	40, 56
BmsI	GCATC	6 cut(s)	232, 1193, 1276, 1284, 1295, 1446
BpiI	GAAGAC	4 cut(s)	192, 474, 551, 1280
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
Bpu10I	CCTNAGC	2 cut(s)	696, 1415
BpuEI	CTTGAG	2 cut(s)	350, 905
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	6
BsaBI	GATNNNNATC	2 cut(s)	63, 783
BsaJI	CCNNGG	4 cut(s)	38, 39, 217, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	964, 1061
Bse8I	GATNNNNATC	2 cut(s)	63, 783
BseBI	CCWGG	1 cut(s)	40
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	4 cut(s)	38, 39, 217, 340
BseGI	GGATG	6 cut(s)	236, 706, 850, 937, 1437, 1465
BseJI	GATNNNNATC	2 cut(s)	63, 783
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	964, 1061
BseRI	GAGGAG	1 cut(s)	996
BseXI	GCAGC	3 cut(s)	241, 1240, 1413
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	2 cut(s)	802, 1412
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	126, 1290
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	2 cut(s)	153, 770
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	153, 770
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	802, 1412
Bsp1286I	GDGCHC	2 cut(s)	126, 1290
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	3 cut(s)	752, 857, 974
BspANI	GGCC	2 cut(s)	802, 1412
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	409
BspHI	TCATGA	2 cut(s)	1114, 1475
BspLI	GGNNCC	1 cut(s)	803
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	3 cut(s)	66, 547, 645
BspQI	GCTCTTC	1 cut(s)	1213
BspTI	CTTAAG	2 cut(s)	1280, 1442
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	964, 1061
BssECI	CCNNGG	4 cut(s)	38, 39, 217, 340
BssMI	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
BssT1I	CCWWGG	2 cut(s)	217, 340
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	4 cut(s)	227, 286, 574, 1072
Bst6I	CTCTTC	4 cut(s)	201, 799, 1213, 1305
BstAFI	CTTAAG	2 cut(s)	1280, 1442
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	4 cut(s)	94, 650, 1265, 1310
BstDEI	CTNAG	3 cut(s)	696, 1106, 1415
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	6 cut(s)	236, 706, 850, 937, 1437, 1465
BstFNI	CGCG	1 cut(s)	409
BstKTI	GATC	8 cut(s)	6, 10, 61, 431, 555, 640, 787, 1150
BstMBI	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 1010, 1294
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	4 cut(s)	450, 598, 695, 1312
BstSCI	CCNGG	2 cut(s)	38, 54
BstSFI	CTRYAG	1 cut(s)	1071
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	241, 1240, 1413
BstV2I	GAAGAC	4 cut(s)	192, 474, 551, 1280
BstX2I	RGATCY	2 cut(s)	552, 637
BstYI	RGATCY	2 cut(s)	552, 637
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	802, 1412
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	6 cut(s)	236, 706, 850, 937, 1437, 1465
BtsI	GCAGTG	1 cut(s)	1228
BtsIMutI	CAGTG	4 cut(s)	232, 957, 1068, 1228
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	4 cut(s)	94, 650, 1265, 1310
CaiI	CAGNNNCTG	1 cut(s)	1256
CciI	TCATGA	2 cut(s)	1114, 1475
Cfr13I	GGNCC	3 cut(s)	801, 1135, 1411
ClaI	ATCGAT	1 cut(s)	6
CseI	GACGC	3 cut(s)	197, 587, 1418
Csp6I	GTAC	3 cut(s)	547, 587, 978
CspCI	CAANNNNNGTGG	2 cut(s)	1014, 1049
CviQI	GTAC	3 cut(s)	547, 587, 978
DdeI	CTNAG	3 cut(s)	696, 1106, 1415
DpnI	GATC	8 cut(s)	5, 9, 60, 430, 554, 639, 786, 1149
DpnII	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
Eam1104I	CTCTTC	4 cut(s)	201, 799, 1213, 1305
EarI	CTCTTC	4 cut(s)	201, 799, 1213, 1305
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	217, 340
Eco24I	GRGCYC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	1135
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	1411
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	217, 340
EcoT22I	ATGCAT	1 cut(s)	1310
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	217, 340
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FaqI	GGGAC	2 cut(s)	153, 770
FauI	CCCGC	3 cut(s)	745, 864, 967
FbaI	TGATCA	2 cut(s)	784, 1147
FblI	GTMKAC	1 cut(s)	1462
Fnu4HI	GCNGC	3 cut(s)	255, 1254, 1427
FokI	GGATG	6 cut(s)	243, 713, 837, 944, 1424, 1452
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	255, 1254, 1427
FspBI	CTAG	3 cut(s)	135, 536, 1130
GluI	GCNGC	3 cut(s)	255, 1254, 1427
HaeIII	GGCC	2 cut(s)	802, 1412
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	3 cut(s)	197, 587, 1418
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	4 cut(s)	818, 1079, 1232, 1276
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	4 cut(s)	165, 274, 338, 794
Hpy166II	GTNNAC	3 cut(s)	547, 1453, 1463
Hpy188I	TCNGA	8 cut(s)	322, 603, 689, 730, 1051, 1152, 1272, 1327
Hpy188III	TCNNGA	6 cut(s)	127, 296, 1115, 1130, 1291, 1476
Hpy8I	GTNNAC	3 cut(s)	547, 1453, 1463
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	4 cut(s)	180, 461, 483, 610
HpyCH4III	ACNGT	4 cut(s)	227, 286, 574, 1072
HpyCH4IV	ACGT	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 1010, 1294
HpyF3I	CTNAG	3 cut(s)	696, 1106, 1415
HpySE526I	ACGT	1 cut(s)	146
Ksp22I	TGATCA	2 cut(s)	784, 1147
Kzo9I	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
LguI	GCTCTTC	1 cut(s)	1213
LmnI	GCTCC	4 cut(s)	121, 461, 532, 1009
Lsp1109I	GCAGC	3 cut(s)	241, 1240, 1413
LweI	GCATC	6 cut(s)	232, 1193, 1276, 1284, 1295, 1446
MaeI	CTAG	3 cut(s)	135, 536, 1130
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	3 cut(s)	326, 442, 1063
MalI	GATC	8 cut(s)	5, 9, 60, 430, 554, 639, 786, 1149
MboI	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
MflI	RGATCY	2 cut(s)	552, 637
MhlI	GDGCHC	2 cut(s)	126, 1290
MluCI	AATT	9 cut(s)	19, 566, 606, 643, 707, 806, 861, 1053, 1394
MlyI	GAGTC	1 cut(s)	1270
MmeI	TCCRAC	2 cut(s)	474, 581
Mph1103I	ATGCAT	1 cut(s)	1310
MseI	TTAA	6 cut(s)	18, 386, 576, 642, 1281, 1443
MspA1I	CMGCKG	1 cut(s)	1253
MspCI	CTTAAG	2 cut(s)	1280, 1442
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	40, 56
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	251, 1010, 1294
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
NlaIV	GGNNCC	1 cut(s)	803
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	2 cut(s)	326, 1063
NsiI	ATGCAT	1 cut(s)	1310
NspI	RCATGY	4 cut(s)	450, 598, 695, 1312
PaeI	GCATGC	1 cut(s)	1312
PagI	TCATGA	2 cut(s)	1114, 1475
PasI	CCCWGGG	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	1213
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	818, 1079, 1232
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	256, 1255, 1428
PleI	GAGTC	1 cut(s)	1270
PpsI	GAGTC	1 cut(s)	1270
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	803
PspPI	GGNCC	3 cut(s)	801, 1135, 1411
PstNI	CAGNNNCTG	1 cut(s)	1256
PsuI	RGATCY	2 cut(s)	552, 637
PsyI	GACNNNGTC	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	3 cut(s)	548, 588, 979
RsaNI	GTAC	3 cut(s)	547, 587, 978
SacI	GAGCTC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	1213
SaqAI	TTAA	6 cut(s)	18, 386, 576, 642, 1281, 1443
SatI	GCNGC	3 cut(s)	255, 1254, 1427
Sau3AI	GATC	8 cut(s)	3, 7, 58, 428, 552, 637, 784, 1147
Sau96I	GGNCC	3 cut(s)	801, 1135, 1411
SchI	GAGTC	1 cut(s)	1270
ScrFI	CCNGG	2 cut(s)	40, 56
SduI	GDGCHC	2 cut(s)	126, 1290
SfaNI	GCATC	6 cut(s)	232, 1193, 1276, 1284, 1295, 1446
SfcI	CTRYAG	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	1135
SmlI	CTYRAG	4 cut(s)	365, 884, 1280, 1442
SmoI	CTYRAG	4 cut(s)	365, 884, 1280, 1442
SphI	GCATGC	1 cut(s)	1312
Sse9I	AATT	9 cut(s)	19, 566, 606, 643, 707, 806, 861, 1053, 1394
SsiI	CCGC	3 cut(s)	752, 857, 974
SspI	AATATT	2 cut(s)	766, 893
SspMI	CTAG	3 cut(s)	135, 536, 1130
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	38, 54
StyI	CCWWGG	2 cut(s)	217, 340
TaaI	ACNGT	4 cut(s)	227, 286, 574, 1072
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	3 cut(s)	6, 627, 1303
TasI	AATT	9 cut(s)	19, 566, 606, 643, 707, 806, 861, 1053, 1394
TatI	WGTACW	2 cut(s)	546, 586
TfiI	GAWTC	3 cut(s)	818, 1079, 1232
Tru1I	TTAA	6 cut(s)	18, 386, 576, 642, 1281, 1443
Tru9I	TTAA	6 cut(s)	18, 386, 576, 642, 1281, 1443
TscAI	CASTG	4 cut(s)	232, 964, 1068, 1228
TseFI	GTSAC	2 cut(s)	326, 1063
TseI	GCWGC	3 cut(s)	254, 1253, 1426
Tsp45I	GTSAC	2 cut(s)	326, 1063
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	4 cut(s)	232, 964, 1068, 1228
Tth111I	GACNNNGTC	1 cut(s)	332
Vha464I	CTTAAG	2 cut(s)	1280, 1442
VpaK11BI	GGWCC	1 cut(s)	1135
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	4 cut(s)	566, 707, 861, 1394
XbaI	TCTAGA	1 cut(s)	1129
XceI	RCATGY	4 cut(s)	450, 598, 695, 1312
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 484
XmiI	GTMKAC	1 cut(s)	1462
XspI	CTAG	3 cut(s)	135, 536, 1130
Zsp2I	ATGCAT	1 cut(s)	1310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.