Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Forward (+)

53703 .. 59792

Gene Structure 6090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGATCCATCAGTTCATTAATTTTGTGATTCGCCCTCCCAGGGCAGACTATAACCCAGATCAGTATTTATGGGAAAGGGATTTCACTCTTGCAGGCAGAGCATACAAACGACAAGACTTGGAGCTTACAAATGCTAGAGGCCATACCTTGCAGTGTAGTCATTATCTTCCTTCACCTTTCCCAGAGGATTCTTCTCTACCTTGTGTTGTATACTGCCATGGAAACAGTGGATGTAGGGCAGACGCAAATGAAGCCGCTTTAATTCTTCTTCCATCAAACATCACTGTTTTCACTCTTGATTTTTCGGGTTCAGGCTTATCTGATGGTGACTATGTCAGCCTTGGTTGGCATGAGAGAGATGACCTCAAGATCGTGGTTTCATATCTAAGAAGCAACAAACAAATCTCGCGTATAGGTCTATGGGGGCGATCAATGGGGGCGGTCACTTGCCTTCTTTATGGAGCAGAAGACCCTTCCATTGCTGGAATGGTGTTGGATAGTGCCTTTTCAAATTTGTATGTTCTAATGATGGAGCTAGTGGATGTTTACAAGATCCGGCTTCCTAAATTCACTGTTAAGATGGCAGTACAATACATGCGCCGGGTAATTGAGAAGAAGGCAAAGTTTGATATCATGGATCTTAATTGCTTACAGGTTGCACCCAAAACATTCATTCCTGCTTTATTTGGACATGCCAAGGACGACAAGTTCATCCAAACCAGCCATTCTGATCTCATCTACAAGTCCTATGCAGGAGACAAAAATATTATATTTTTTGATGGCGATCACAATTCCTCTCGGCCACAGTTTTATTATGATTCAGTGTCAATTTTCTTTTACAATGTGCTTCATCCCCCTCAAATATCTTCTTCTCATTCATGTAAGCCTGAGAAATATTATGATCTAGAGGATTTGAAGGTTGGTGCTGGTTTGGATGAGGGCCTGTTACATAAGATAATGAGTGGTGTTCATTCTGCGGGTAGTGATGCTGCAAGTTCTTCTTATGCTCCTGCAGCCATTGCAACCAAGAAGTCTGTGGGAGACCTTCTTTCTGAAATCGCACCAATGAATCCTACAGTTGACCCTGTGCATGATCAGGATGGCACACTTAACTGTCACGATACATCGAATCTACAGGATCGGCCAAATGGTCAGAACGAAGAATGCTGTTCGTATACAAGCTCAAATAGGGAGAGTTGGGGAAGATGCTCTTCATTAGGAGGCAGTGATGGTGAATCTTCTGATTTCATGGCTGTTCACAATGGTCATCAGAAGGTGTATACAACATCCCTTCATCCTGAACAACAAAAATCACCGGACCTGAAGAAAGAGGTGAAGAAAAAGAAGAAAGTTCCAACTGCTCCAAAGAAGCCCAAAAGTGAGAAACTTGAAAGGTTAGAGGCCCTTGGCAAAAGATTGCGTCTTTGCATCCTGAAGCGAGTAAATCATAGGAGGCACCACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

489

Amino Acids

54.69

Weight (kDa)

7.91

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	68 - 175	1.4e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	68 - 172	7.1e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1455
AccI	GTMKAC	3 cut(s)	210, 1175, 1280
AccII	CGCG	1 cut(s)	409
AciI	CCGC	3 cut(s)	255, 440, 977
AclWI	GGATC	3 cut(s)	547, 645, 1146
AcoI	YGGCCR	2 cut(s)	800, 1142
AcsI	RAATTY	2 cut(s)	511, 566
AcuI	CTGAAG	2 cut(s)	1343, 1454
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	510, 916, 1391
AjnI	CCWGG	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	3 cut(s)	124, 535, 1182
AluI	AGCT	3 cut(s)	124, 535, 1182
Alw26I	GTCTC	2 cut(s)	750, 1035
AlwI	GGATC	3 cut(s)	547, 645, 1146
AoxI	GGCC	5 cut(s)	139, 800, 940, 1142, 1401
ApeKI	GCWGC	2 cut(s)	989, 1013
ApoI	RAATTY	2 cut(s)	511, 566
AseI	ATTAAT	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	3 cut(s)	940, 1318, 1402
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	5 cut(s)	165, 338, 1244, 1305, 1345
AvaII	GGWCC	1 cut(s)	1318
BanI	GGYRCC	1 cut(s)	1455
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	976, 1025
BccI	CCATC	8 cut(s)	15, 280, 317, 523, 574, 773, 1094, 1223
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	1093
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	2 cut(s)	750, 1035
BfaI	CTAG	3 cut(s)	135, 536, 905
BfmI	CTRYAG	3 cut(s)	1011, 1074, 1133
BisI	GCNGC	3 cut(s)	255, 990, 1014
BlsI	GCNGC	3 cut(s)	256, 991, 1015
Bme1390I	CCNGG	2 cut(s)	40, 602
Bme18I	GGWCC	1 cut(s)	1318
BmgT120I	GGNCC	3 cut(s)	940, 1318, 1402
BmiI	GGNNCC	1 cut(s)	1457
BmrFI	CCNGG	2 cut(s)	40, 602
BmsI	GCATC	3 cut(s)	976, 1196, 1437
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	1035
BsaJI	CCNNGG	6 cut(s)	38, 39, 217, 340, 696, 1405
BsaWI	WCCGGW	1 cut(s)	1315
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse3DI	GCAATG	2 cut(s)	477, 1017
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	6 cut(s)	38, 39, 217, 340, 696, 1405
BseGI	GGATG	9 cut(s)	236, 547, 711, 850, 940, 1105, 1286, 1294, 1428
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	477, 1017
BseMII	CTCAG	1 cut(s)	879
BseXI	GCAGC	2 cut(s)	976, 1025
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
BshNI	GGYRCC	1 cut(s)	1455
BsiSI	CCGG	3 cut(s)	556, 601, 1316
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	750, 1035
BsmI	GAATGC	1 cut(s)	1169
BsnI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
Bso31I	GGTCTC	1 cut(s)	1035
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	3 cut(s)	255, 440, 977
BspANI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	1457
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	3 cut(s)	547, 645, 1146
BspQI	GCTCTTC	1 cut(s)	1216
BspT107I	GGYRCC	1 cut(s)	1455
BspTNI	GGTCTC	1 cut(s)	1035
BsrDI	GCAATG	2 cut(s)	477, 1017
BssECI	CCNNGG	6 cut(s)	38, 39, 217, 340, 696, 1405
BssNAI	GTATAC	3 cut(s)	211, 1176, 1281
BssT1I	CCWWGG	4 cut(s)	217, 340, 696, 1405
Bst1107I	GTATAC	3 cut(s)	211, 1176, 1281
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	6 cut(s)	227, 286, 574, 807, 1078, 1115
Bst6I	CTCTTC	1 cut(s)	1216
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	386, 888
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	9 cut(s)	236, 547, 711, 850, 940, 1105, 1286, 1294, 1428
BstFNI	CGCG	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	600
BstMAI	GTCTC	2 cut(s)	750, 1035
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 251, 1013, 1019
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	2 cut(s)	598, 695
BstSCI	CCNGG	2 cut(s)	38, 600
BstSFI	CTRYAG	3 cut(s)	1011, 1074, 1133
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	976, 1025
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	552, 637
BstYI	RGATCY	2 cut(s)	552, 637
BstZ17I	GTATAC	3 cut(s)	211, 1176, 1281
BsuRI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	9 cut(s)	236, 547, 711, 850, 940, 1105, 1286, 1294, 1428
BtsI	GCAGTG	2 cut(s)	158, 1231
BtsIMutI	CAGTG	6 cut(s)	158, 232, 282, 570, 828, 1231
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	940, 1318, 1402
CseI	GACGC	2 cut(s)	251, 1409
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	8 cut(s)	218, 350, 595, 634, 692, 879, 1091, 1249
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	2 cut(s)	386, 888
EaeI	YGGCCR	2 cut(s)	800, 1142
Eam1104I	CTCTTC	1 cut(s)	1216
EarI	CTCTTC	1 cut(s)	1216
Eco130I	CCWWGG	4 cut(s)	217, 340, 696, 1405
Eco31I	GGTCTC	1 cut(s)	1035
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	1318
Eco57I	CTGAAG	2 cut(s)	1343, 1454
EcoO109I	RGGNCCY	2 cut(s)	940, 1402
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	4 cut(s)	217, 340, 696, 1405
ErhI	CCWWGG	4 cut(s)	217, 340, 696, 1405
FaeI	CATG	8 cut(s)	221, 353, 598, 637, 695, 882, 1094, 1252
FalI	AAGNNNNNCTT	4 cut(s)	985, 1017, 1195, 1227
FatI	CATG	8 cut(s)	217, 349, 594, 633, 691, 878, 1090, 1248
FauI	CCCGC	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	1093
FblI	GTMKAC	3 cut(s)	210, 1175, 1280
Fnu4HI	GCNGC	3 cut(s)	255, 990, 1014
FokI	GGATG	9 cut(s)	243, 554, 698, 837, 947, 1112, 1273, 1281, 1415
Fsp4HI	GCNGC	3 cut(s)	255, 990, 1014
FspBI	CTAG	3 cut(s)	135, 536, 905
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	3 cut(s)	255, 990, 1014
HaeIII	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
HapII	CCGG	3 cut(s)	556, 601, 1316
HgaI	GACGC	2 cut(s)	251, 1409
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	8 cut(s)	221, 353, 598, 637, 695, 882, 1094, 1252
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HincII	GTYRAC	1 cut(s)	1081
HindII	GTYRAC	1 cut(s)	1081
HinfI	GANTC	6 cut(s)	28, 188, 818, 1069, 1129, 1235
HpaII	CCGG	3 cut(s)	556, 601, 1316
HphI	GGTGA	5 cut(s)	165, 338, 1244, 1305, 1345
Hpy166II	GTNNAC	6 cut(s)	211, 547, 1081, 1176, 1258, 1281
Hpy188I	TCNGA	6 cut(s)	322, 730, 1054, 1155, 1243, 1272
Hpy188III	TCNNGA	7 cut(s)	296, 367, 905, 1097, 1118, 1298, 1432
Hpy8I	GTNNAC	6 cut(s)	211, 547, 1081, 1176, 1258, 1281
HpyAV	CCTTC	8 cut(s)	180, 461, 483, 610, 910, 1055, 1267, 1301
HpyCH4III	ACNGT	6 cut(s)	227, 286, 574, 807, 1078, 1115
HpyCH4V	TGCA	9 cut(s)	92, 151, 659, 752, 992, 1013, 1022, 1090, 1428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 251, 1013, 1019
HpyF3I	CTNAG	2 cut(s)	386, 888
Hsp92II	CATG	8 cut(s)	221, 353, 598, 637, 695, 882, 1094, 1252
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	1093
LguI	GCTCTTC	1 cut(s)	1216
LmnI	GCTCC	5 cut(s)	121, 461, 532, 1012, 1366
Lsp1109I	GCAGC	2 cut(s)	976, 1025
LweI	GCATC	3 cut(s)	976, 1196, 1437
MaeI	CTAG	3 cut(s)	135, 536, 905
MaeIII	GTNAC	4 cut(s)	326, 442, 945, 1115
MflI	RGATCY	2 cut(s)	552, 637
MluCI	AATT	8 cut(s)	19, 261, 511, 566, 606, 643, 790, 828
MmeI	TCCRAC	2 cut(s)	474, 1379
MseI	TTAA	5 cut(s)	18, 260, 576, 642, 1110
MspI	CCGG	3 cut(s)	556, 601, 1316
MspR9I	CCNGG	2 cut(s)	40, 602
Mva1269I	GAATGC	1 cut(s)	1169
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	4 cut(s)	98, 251, 1013, 1019
NciI	CCSGG	1 cut(s)	602
NcoI	CCATGG	1 cut(s)	217
NlaIII	CATG	8 cut(s)	221, 353, 598, 637, 695, 882, 1094, 1252
NlaIV	GGNNCC	1 cut(s)	1457
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	3 cut(s)	326, 442, 1115
NspI	RCATGY	2 cut(s)	598, 695
PasI	CCCWGGG	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	1216
PctI	GAATGC	1 cut(s)	1169
PfeI	GAWTC	6 cut(s)	28, 188, 818, 1069, 1129, 1235
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	256, 991, 1015
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	1457
PspPI	GGNCC	3 cut(s)	940, 1318, 1402
PstI	CTGCAG	1 cut(s)	1015
PsuI	RGATCY	2 cut(s)	552, 637
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	1216
SaqAI	TTAA	5 cut(s)	18, 260, 576, 642, 1110
SatI	GCNGC	3 cut(s)	255, 990, 1014
Sau96I	GGNCC	3 cut(s)	940, 1318, 1402
ScrFI	CCNGG	2 cut(s)	40, 602
SfaNI	GCATC	3 cut(s)	976, 1196, 1437
SfcI	CTRYAG	3 cut(s)	1011, 1074, 1133
SinI	GGWCC	1 cut(s)	1318
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	8 cut(s)	19, 261, 511, 566, 606, 643, 790, 828
SsiI	CCGC	3 cut(s)	255, 440, 977
SspI	AATATT	2 cut(s)	766, 896
SspMI	CTAG	3 cut(s)	135, 536, 905
StyD4I	CCNGG	2 cut(s)	38, 600
StyI	CCWWGG	4 cut(s)	217, 340, 696, 1405
TaaI	ACNGT	6 cut(s)	227, 286, 574, 807, 1078, 1115
TaqI	TCGA	1 cut(s)	1127
TasI	AATT	8 cut(s)	19, 261, 511, 566, 606, 643, 790, 828
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	6 cut(s)	28, 188, 818, 1069, 1129, 1235
Tru1I	TTAA	5 cut(s)	18, 260, 576, 642, 1110
Tru9I	TTAA	5 cut(s)	18, 260, 576, 642, 1110
TscAI	CASTG	6 cut(s)	158, 232, 289, 577, 828, 1231
TseFI	GTSAC	3 cut(s)	326, 442, 1115
TseI	GCWGC	2 cut(s)	989, 1013
Tsp45I	GTSAC	3 cut(s)	326, 442, 1115
TspRI	CASTG	6 cut(s)	158, 232, 289, 577, 828, 1231
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	1318
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	2 cut(s)	511, 566
XbaI	TCTAGA	1 cut(s)	904
XceI	RCATGY	2 cut(s)	598, 695
XcmI	CCANNNNNNNNNTGG	3 cut(s)	224, 484, 1033
XmiI	GTMKAC	3 cut(s)	210, 1175, 1280
XspI	CTAG	3 cut(s)	135, 536, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.