Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Forward (+)

55150418 .. 55153046

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0381100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGGTTACTGCTGAAGAAAATGATGCCCTCACTCTTATTCCAATGGCGGATGAAATTTTGGCTGCCGTGAAATCTATGGATGCGGATAGTGCTCCGGGTCCTGATGGTTTCACTGGTCATTTTTTTATCTCTTGTTGGGAAATAGTTGGTGATGATGTTGTCAATGCTGTGCGATATTTTTTTACCCATGAAATTATGCCGTCTACTTTCAATTCTGGGTTGATGGTTTTGATTCCTAAAGTTGATCATGCAGATTCCATCACACAGTTCCGTCCTATTGCTCTGAGCAACTTTGTTTTCAAGATCATTCCCAAGATTATGGCTCTTAGGCTTGCTTCCATTGCGGCTCGAATTATTTCCCCACAGCAACATGCTTTTGTTCCTGGCCGTCATATTTCAGACTGTATTTTGCTAACTTCTGAGTGCTTTAATCTGTTGGATTCTAAGTGTCATGGAGGTAATGTAGCAATCAAGGTGGACATCACAAAGGCTTTTGATACACTCTCTTGGAGGTTTCTTATTCATGTGCTTCAAGCCTTTGGTTTTCATCCAAAGTTTTTGAATTGGGTGCATGCTCTCCTTCGGTCAGCTAAGCTTTCTCTTTCAATTAATGGGAGCTCAGTGGGCTACTTTTCTTGTGGTCGAGGGGTGCGGCAAGGCGACCCGCTATCTCCTTTACTTTTTTGTTTGGCTGAGGAGGTTCTTAGCAGAGGTATCTCAGACCTTGTCAGTTCGGGACGGTTACATCTAATCTCTTCTCCTAGAGGCACTATAGCTCCTTCCCATGTTCTGTTTGCTGATGATGTCATAATTTTTTGCCGTGGTGACAGACGCAATCTTGCAAGGATTATGCATTTCTTTGATGATTACGGTGTTGCATCAGGACAGATTATTAATCGGGCAAAATCACAAGTATTTCTCAGTAAGCACCTTCATTATCGACGACACTCTATTGCCACTAACTTGGGCATTTCTCTTGGCTCAGCACCGTTTACCTACTTGGGAGTCCCTATTTTTCATGGCAAGCCGCGGGTCTCTTATTTCCAATCAATCGTGGATAAAGTGCGGTTGAAGTTTTCCAGTTGGATGGGCAATTTTTTATCTATGGCTGGTCGGGTTCAGTTGATTAAATCTGTGGTTTACAGTATGTTTATATATAGTTTTCAGGTGTATGAATGGCCAGTCTCTTTACTTCAACGTGTGGAAGTTTGGTGTCGCAACTTTCTTTGGTCAGGGTCAATTCATAAACGTGGAGCCCCTCTGGTAGCTTGGAAATCTTGTTGCACTCCAGTTGAGGAAGGAGGTTTGGGCCTAAAGCAACTTACAGTTCTGAATCGTTCCCTTCTTCTAAAACGTGGTTGGGAAATATTTTCATCTAGCTCTACAGGTTGCTCTTTCATTCGTGCTAGATTTTGGAGGAATGGTGCTCTTCGTACTTCATATACGCCCTCCTCAATTTGGCCTGGTGTACGTAAGTATTGGCCTGTAATTATTGATAACGCACGGTGGCTTATTGGATCAGGTTCAAAGGTGTCTTTTTGGAAGGATAATTTCATGGGAAAGGCTTTGATTGATTTCTTTGGGGCTATTGATAATGGGGTGGATGGCCTTAATGAGTCTGTGGCTAGTTTCATTAATCATGGTTCCTGGGAGCTACCTCAATTACTTCAAATTCACTATCCTGCATTATGTGAGTTGATTAGTAAGGTTCCTATTGCTACTGATCCTACACTTGATGATACATTGATATGGTCACCATCTTCTTCAGGTGAGCTTACTGCTAAATTAGCGTTTCAATTTTTACACCAACCACTTCCTTCAATGGATTGGGGTAAATGCATTTGGTCTAAGTACATTACGCCTCGTATCTCATTGTTGACATGGAAGGTGTTAAGGGGCAGGGTGCTTACTGATGAGTTTTTGCAGAAAAGGGGAGTCTCTTTGGCTTCTCGTTGTGGTCTTTGCTCTCTTAATTTGGATTCTGTAGATCACATATTTCTTCATTGCCCATTTGCTCATGGAATCTGGAACCACATGATTAACCAGTTTGAATTGGGTGTTTTGCCTTGCTCAATATTAGGCGTGTTTCATTTGGGCATCTCTGTTGGTTTTAGTCCACAATTAAAAGAGTTATGGTTGGCTTGCTTTACAACACTTTTATGGTTTATTTGGCATGCTAGAAACAAAGCAAAATATGATGGCCATGTGTTTCAAGTGGATGTGATTTGTCGAATGATCTCAGGACACATTCAATATGCTAGTCGACTTGCCCACGGCAACATGCATAACACCATACGTGATCTCCGGATATTGAAGCGGTTTGGTGTCCAATGCAAGCCTCGCTGTGCTCCTAGGATAATTGAAGTCAATTGGCATCCACCACCTTATGGGTGGATTAAAATTAACTCTGATGGTGCTTGGAAGCATGGTTCTAATGTGGGGGGATATGGTGCTGTTTTTCGAGATTACAGGGGTCATGTGCTTTCTCTGCTAATATTGAAATTCCTAGCTCAGTTGCAGCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

842

Amino Acids

94.67

Weight (kDa)

9.42

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	78 - 338	2.6e-32	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	594 - 676	2e-21	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	2387
AccI	GTMKAC	2 cut(s)	203, 2263
AccII	CGCG	1 cut(s)	1030
AccIII	TCCGGA	1 cut(s)	2304
AclWI	GGATC	2 cut(s)	1525, 1718
AcoI	YGGCCR	3 cut(s)	385, 1178, 2200
AcsI	RAATTY	3 cut(s)	54, 1671, 2501
AcuI	CTGAAG	2 cut(s)	33, 1749
AfaI	GTAC	3 cut(s)	1435, 1470, 1853
AfiI	CCNNNNNNNGG	2 cut(s)	1458, 2387
AflIII	ACRYGT	1 cut(s)	1198
AjnI	CCWGG	3 cut(s)	382, 1462, 1646
AloI	GAACNNNNNNTCC	2 cut(s)	2413, 2445
AluBI	AGCT	9 cut(s)	590, 595, 618, 776, 1268, 1380, 1654, 1774, 2510
AluI	AGCT	9 cut(s)	590, 595, 618, 776, 1268, 1380, 1654, 1774, 2510
Alw21I	GWGCWC	4 cut(s)	94, 620, 1429, 2350
Alw26I	GTCTC	3 cut(s)	1039, 1189, 1942
AlwI	GGATC	2 cut(s)	1525, 1718
Aor13HI	TCCGGA	1 cut(s)	2304
AoxI	GGCC	7 cut(s)	385, 1178, 1309, 1460, 1481, 1606, 2200
ApeKI	GCWGC	2 cut(s)	62, 2518
ApoI	RAATTY	3 cut(s)	54, 1671, 2501
AseI	ATTAAT	3 cut(s)	609, 894, 1635
Asp700I	GAANNNNTTC	1 cut(s)	355
AspA2I	CCTAGG	1 cut(s)	2351
AspS9I	GGNCC	2 cut(s)	98, 1309
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	4 cut(s)	161, 836, 1746, 1781
AvaII	GGWCC	1 cut(s)	98
AvrII	CCTAGG	1 cut(s)	2351
BalI	TGGCCA	2 cut(s)	1180, 2202
BanII	GRGCYC	2 cut(s)	620, 1258
Bbv12I	GWGCWC	4 cut(s)	94, 620, 1429, 2350
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	8 cut(s)	98, 217, 266, 1081, 1598, 1765, 2192, 2405
BceAI	ACGGC	5 cut(s)	50, 184, 372, 804, 2290
BciT130I	CCWGG	3 cut(s)	384, 1464, 1648
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	1039, 1189, 1942
BfaI	CTAG	8 cut(s)	762, 1377, 1407, 1626, 2178, 2259, 2352, 2507
BfmI	CTRYAG	3 cut(s)	771, 1383, 1983
BisI	GCNGC	5 cut(s)	63, 345, 653, 1028, 2519
BlnI	CCTAGG	1 cut(s)	2351
BlpI	GCTNAGC	2 cut(s)	591, 982
BlsI	GCNGC	5 cut(s)	64, 346, 654, 1029, 2520
Bme1390I	CCNGG	4 cut(s)	96, 384, 1464, 1648
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	98, 1309
BmiI	GGNNCC	5 cut(s)	99, 1255, 1645, 1710, 2030
BmrFI	CCNGG	4 cut(s)	96, 384, 1464, 1648
BmsI	GCATC	5 cut(s)	13, 70, 887, 2106, 2383
BpmI	CTGGAG	1 cut(s)	1272
Bpu10I	CCTNAGC	1 cut(s)	693
Bpu1102I	GCTNAGC	2 cut(s)	591, 982
BpuMI	CCSGG	1 cut(s)	96
BsaAI	YACGTR	2 cut(s)	1472, 2297
BsaI	GGTCTC	1 cut(s)	1039
BsaJI	CCNNGG	5 cut(s)	820, 1028, 1647, 2272, 2351
BsaWI	WCCGGW	1 cut(s)	2304
BsaXI	ACNNNNNCTCC	8 cut(s)	447, 477, 760, 790, 1408, 1438, 2286, 2316
Bsc4I	CCNNNNNNNGG	2 cut(s)	1458, 2387
Bse1I	ACTGG	5 cut(s)	118, 1080, 1181, 1289, 2044
Bse3DI	GCAATG	2 cut(s)	339, 2002
BseAI	TCCGGA	1 cut(s)	2304
BseBI	CCWGG	3 cut(s)	384, 1464, 1648
BseDI	CCNNGG	5 cut(s)	820, 1028, 1647, 2272, 2351
BseGI	GGATG	7 cut(s)	55, 85, 547, 1092, 1609, 2224, 2374
BseLI	CCNNNNNNNGG	2 cut(s)	1458, 2387
BseMI	GCAATG	2 cut(s)	339, 2002
BseMII	CTCAG	9 cut(s)	275, 411, 633, 684, 732, 934, 996, 2253, 2525
BseNI	ACTGG	5 cut(s)	118, 1080, 1181, 1289, 2044
BseRI	GAGGAG	2 cut(s)	710, 1441
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	1030
BshFI	GGCC	7 cut(s)	387, 1180, 1311, 1462, 1483, 1608, 2202
BsiHKAI	GWGCWC	4 cut(s)	94, 620, 1429, 2350
BsiSI	CCGG	2 cut(s)	95, 2305
BslFI	GGGAC	2 cut(s)	750, 992
BslI	CCNNNNNNNGG	2 cut(s)	1458, 2387
BsmAI	GTCTC	3 cut(s)	1039, 1189, 1942
BsmFI	GGGAC	2 cut(s)	750, 992
BsnI	GGCC	7 cut(s)	387, 1180, 1311, 1462, 1483, 1608, 2202
Bso31I	GGTCTC	1 cut(s)	1039
Bsp1286I	GDGCHC	5 cut(s)	94, 620, 1258, 1429, 2350
Bsp13I	TCCGGA	1 cut(s)	2304
Bsp143I	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
Bsp1720I	GCTNAGC	2 cut(s)	591, 982
BspANI	GGCC	7 cut(s)	387, 1180, 1311, 1462, 1483, 1608, 2202
BspCNI	CTCAG	9 cut(s)	276, 412, 632, 685, 731, 933, 995, 2252, 2524
BspEI	TCCGGA	1 cut(s)	2304
BspFNI	CGCG	1 cut(s)	1030
BspLI	GGNNCC	5 cut(s)	99, 1255, 1645, 1710, 2030
BspPI	GGATC	2 cut(s)	1525, 1718
BspQI	GCTCTTC	1 cut(s)	1434
BspTNI	GGTCTC	1 cut(s)	1039
BsrDI	GCAATG	2 cut(s)	339, 2002
BsrI	ACTGG	5 cut(s)	118, 1080, 1181, 1289, 2044
BssECI	CCNNGG	5 cut(s)	820, 1028, 1647, 2272, 2351
BssMI	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
BssT1I	CCWWGG	1 cut(s)	2351
Bst2UI	CCWGG	3 cut(s)	384, 1464, 1648
Bst4CI	ACNGT	8 cut(s)	267, 404, 741, 872, 990, 1145, 1327, 1506
Bst6I	CTCTTC	2 cut(s)	760, 1434
BstBAI	YACGTR	2 cut(s)	1472, 2297
BstC8I	GCNNGC	6 cut(s)	333, 573, 1025, 2143, 2175, 2336
BstDSI	CCRYGG	3 cut(s)	820, 1028, 2272
BstEII	GGTNACC	1 cut(s)	1752
BstF5I	GGATG	7 cut(s)	55, 85, 547, 1092, 1609, 2224, 2374
BstFNI	CGCG	1 cut(s)	1030
BstKTI	GATC	7 cut(s)	247, 306, 1520, 1726, 1990, 2238, 2302
BstMAI	GTCTC	3 cut(s)	1039, 1189, 1942
BstMBI	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 341, 624, 1787, 2340, 2488
BstNI	CCWGG	3 cut(s)	384, 1464, 1648
BstNSI	RCATGY	4 cut(s)	374, 575, 2177, 2284
BstPI	GGTNACC	1 cut(s)	1752
BstSCI	CCNGG	4 cut(s)	94, 382, 1462, 1646
BstSFI	CTRYAG	3 cut(s)	771, 1383, 1983
BstSNI	TACGTA	1 cut(s)	1472
BstUI	CGCG	1 cut(s)	1030
BstV1I	GCAGC	1 cut(s)	49
BstXI	CCANNNNNNTGG	3 cut(s)	319, 964, 1087
BsuRI	GGCC	7 cut(s)	387, 1180, 1311, 1462, 1483, 1608, 2202
BtgI	CCRYGG	3 cut(s)	820, 1028, 2272
BtsCI	GGATG	7 cut(s)	55, 85, 547, 1092, 1609, 2224, 2374
BtsIMutI	CAGTG	2 cut(s)	111, 627
Cac8I	GCNNGC	6 cut(s)	333, 573, 1025, 2143, 2175, 2336
Cfr13I	GGNCC	2 cut(s)	98, 1309
Cfr42I	CCGCGG	1 cut(s)	1031
CseI	GACGC	1 cut(s)	840
Csp6I	GTAC	3 cut(s)	1434, 1469, 1852
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviQI	GTAC	3 cut(s)	1434, 1469, 1852
DpnI	GATC	7 cut(s)	246, 305, 1519, 1725, 1989, 2237, 2301
DpnII	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
EaeI	YGGCCR	3 cut(s)	385, 1178, 2200
Eam1104I	CTCTTC	2 cut(s)	760, 1434
EarI	CTCTTC	2 cut(s)	760, 1434
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	618
Eco105I	TACGTA	1 cut(s)	1472
Eco130I	CCWWGG	1 cut(s)	2351
Eco24I	GRGCYC	2 cut(s)	620, 1258
Eco31I	GGTCTC	1 cut(s)	1039
Eco47I	GGWCC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	618
Eco57I	CTGAAG	2 cut(s)	33, 1749
Eco91I	GGTNACC	1 cut(s)	1752
EcoICRI	GAGCTC	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	1752
EcoRII	CCWGG	3 cut(s)	382, 1462, 1646
EcoT14I	CCWWGG	1 cut(s)	2351
EcoT22I	ATGCAT	3 cut(s)	855, 1841, 2286
EcoT38I	GRGCYC	2 cut(s)	620, 1258
ErhI	CCWWGG	1 cut(s)	2351
FaqI	GGGAC	2 cut(s)	750, 992
FauI	CCCGC	2 cut(s)	672, 1023
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	2 cut(s)	203, 2263
Fnu4HI	GCNGC	5 cut(s)	63, 345, 653, 1028, 2519
FokI	GGATG	7 cut(s)	62, 92, 534, 1099, 1616, 2231, 2361
FriOI	GRGCYC	2 cut(s)	620, 1258
Fsp4HI	GCNGC	5 cut(s)	63, 345, 653, 1028, 2519
FspBI	CTAG	8 cut(s)	762, 1377, 1407, 1626, 2178, 2259, 2352, 2507
GluI	GCNGC	5 cut(s)	63, 345, 653, 1028, 2519
GsuI	CTGGAG	1 cut(s)	1272
HaeIII	GGCC	7 cut(s)	387, 1180, 1311, 1462, 1483, 1608, 2202
HapII	CCGG	2 cut(s)	95, 2305
HgaI	GACGC	1 cut(s)	840
HincII	GTYRAC	2 cut(s)	1878, 2264
HindII	GTYRAC	2 cut(s)	1878, 2264
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	9 cut(s)	232, 254, 440, 1005, 1333, 1616, 1935, 1979, 2022
HpaII	CCGG	2 cut(s)	95, 2305
HphI	GGTGA	4 cut(s)	161, 836, 1746, 1781
Hpy166II	GTNNAC	8 cut(s)	204, 478, 993, 1141, 1469, 1878, 2117, 2264
Hpy188I	TCNGA	6 cut(s)	285, 400, 421, 721, 1332, 2410
Hpy188III	TCNNGA	8 cut(s)	101, 301, 735, 882, 2026, 2241, 2305, 2462
Hpy8I	GTNNAC	8 cut(s)	204, 478, 993, 1141, 1469, 1878, 2117, 2264
Hpy99I	CGWCG	1 cut(s)	945
HpyAV	CCTTC	8 cut(s)	590, 789, 941, 1292, 1352, 1537, 1827, 1879
HpyCH4III	ACNGT	8 cut(s)	267, 404, 741, 872, 990, 1145, 1327, 1506
HpyCH4IV	ACGT	5 cut(s)	1198, 1249, 1354, 1471, 2296
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 341, 624, 1787, 2340, 2488
HpySE526I	ACGT	5 cut(s)	1198, 1249, 1354, 1471, 2296
Kpn2I	TCCGGA	1 cut(s)	2304
Ksp22I	TGATCA	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	1031
Kzo9I	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
LguI	GCTCTTC	1 cut(s)	1434
LmnI	GCTCC	6 cut(s)	97, 615, 781, 1253, 1651, 2353
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	5 cut(s)	13, 70, 887, 2106, 2383
MaeI	CTAG	8 cut(s)	762, 1377, 1407, 1626, 2178, 2259, 2352, 2507
MaeII	ACGT	5 cut(s)	1198, 1249, 1354, 1471, 2296
MaeIII	GTNAC	4 cut(s)	4, 741, 824, 1752
MalI	GATC	7 cut(s)	246, 305, 1519, 1725, 1989, 2237, 2301
MboI	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
MboII	GAAGA	7 cut(s)	26, 747, 1337, 1421, 1752, 1755, 1991
MfeI	CAATTG	1 cut(s)	2368
MhlI	GDGCHC	5 cut(s)	94, 620, 1258, 1429, 2350
MlsI	TGGCCA	2 cut(s)	1180, 2202
MluNI	TGGCCA	2 cut(s)	1180, 2202
MlyI	GAGTC	3 cut(s)	1014, 1625, 1944
MmeI	TCCRAC	2 cut(s)	417, 1064
Mox20I	TGGCCA	2 cut(s)	1180, 2202
Mph1103I	ATGCAT	3 cut(s)	855, 1841, 2286
MroI	TCCGGA	1 cut(s)	2304
MroXI	GAANNNNTTC	1 cut(s)	355
MscI	TGGCCA	2 cut(s)	1180, 2202
MslI	CAYNNNNRTG	3 cut(s)	1248, 1747, 2158
Msp20I	TGGCCA	2 cut(s)	1180, 2202
MspA1I	CMGCKG	2 cut(s)	1030, 2521
MspI	CCGG	2 cut(s)	95, 2305
MspR9I	CCNGG	4 cut(s)	96, 384, 1464, 1648
MunI	CAATTG	1 cut(s)	2368
MvaI	CCWGG	3 cut(s)	384, 1464, 1648
MvnI	CGCG	1 cut(s)	1030
MwoI	GCNNNNNNNGC	6 cut(s)	89, 341, 624, 1787, 2340, 2488
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
NlaIV	GGNNCC	5 cut(s)	99, 1255, 1645, 1710, 2030
NmuCI	GTSAC	2 cut(s)	824, 1752
NsiI	ATGCAT	3 cut(s)	855, 1841, 2286
NspI	RCATGY	4 cut(s)	374, 575, 2177, 2284
PaeI	GCATGC	2 cut(s)	575, 2177
PciSI	GCTCTTC	1 cut(s)	1434
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	6 cut(s)	232, 254, 440, 1333, 1979, 2022
PflFI	GACNNNGTC	1 cut(s)	725
PflMI	CCANNNNNTGG	1 cut(s)	2387
PkrI	GCNGC	5 cut(s)	64, 346, 654, 1029, 2520
PleI	GAGTC	3 cut(s)	1013, 1624, 1943
PpsI	GAGTC	3 cut(s)	1013, 1624, 1943
Ppu21I	YACGTR	2 cut(s)	1472, 2297
PpuMI	RGGWCCY	1 cut(s)	98
PshBI	ATTAAT	3 cut(s)	609, 894, 1635
Psp124BI	GAGCTC	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	382, 1462, 1646
PspEI	GGTNACC	1 cut(s)	1752
PspGI	CCWGG	3 cut(s)	382, 1462, 1646
PspN4I	GGNNCC	5 cut(s)	99, 1255, 1645, 1710, 2030
PspPI	GGNCC	2 cut(s)	98, 1309
PspPPI	RGGWCCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	725
RsaI	GTAC	3 cut(s)	1435, 1470, 1853
RsaNI	GTAC	3 cut(s)	1434, 1469, 1852
RseI	CAYNNNNRTG	3 cut(s)	1248, 1747, 2158
SacI	GAGCTC	1 cut(s)	620
SacII	CCGCGG	1 cut(s)	1031
SalI	GTCGAC	1 cut(s)	2262
SapI	GCTCTTC	1 cut(s)	1434
SatI	GCNGC	5 cut(s)	63, 345, 653, 1028, 2519
Sau3AI	GATC	7 cut(s)	244, 303, 1517, 1723, 1987, 2235, 2299
Sau96I	GGNCC	2 cut(s)	98, 1309
SchI	GAGTC	3 cut(s)	1014, 1625, 1944
ScrFI	CCNGG	4 cut(s)	96, 384, 1464, 1648
SduI	GDGCHC	5 cut(s)	94, 620, 1258, 1429, 2350
SfaNI	GCATC	5 cut(s)	13, 70, 887, 2106, 2383
SfcI	CTRYAG	3 cut(s)	771, 1383, 1983
Sfr303I	CCGCGG	1 cut(s)	1031
SgrBI	CCGCGG	1 cut(s)	1031
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	3 cut(s)	1248, 1747, 2158
SnaBI	TACGTA	1 cut(s)	1472
SphI	GCATGC	2 cut(s)	575, 2177
SspI	AATATT	3 cut(s)	1368, 2076, 2496
SspMI	CTAG	8 cut(s)	762, 1377, 1407, 1626, 2178, 2259, 2352, 2507
SstI	GAGCTC	1 cut(s)	620
StyD4I	CCNGG	4 cut(s)	94, 382, 1462, 1646
StyI	CCWWGG	1 cut(s)	2351
TaaI	ACNGT	8 cut(s)	267, 404, 741, 872, 990, 1145, 1327, 1506
TaiI	ACGT	5 cut(s)	1201, 1252, 1357, 1474, 2299
TaqI	TCGA	6 cut(s)	349, 643, 940, 2230, 2263, 2461
TaqII	GACCGA	1 cut(s)	573
TatI	WGTACW	1 cut(s)	1851
TauI	GCSGC	3 cut(s)	347, 655, 1030
TfiI	GAWTC	6 cut(s)	232, 254, 440, 1333, 1979, 2022
TscAI	CASTG	2 cut(s)	118, 627
TseFI	GTSAC	2 cut(s)	824, 1752
TseI	GCWGC	2 cut(s)	62, 2518
Tsp45I	GTSAC	2 cut(s)	824, 1752
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	118, 627
Tth111I	GACNNNGTC	1 cut(s)	725
Van91I	CCANNNNNTGG	1 cut(s)	2387
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	3 cut(s)	609, 894, 1635
XapI	RAATTY	3 cut(s)	54, 1671, 2501
XceI	RCATGY	4 cut(s)	374, 575, 2177, 2284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2388
XmaJI	CCTAGG	1 cut(s)	2351
XmiI	GTMKAC	2 cut(s)	203, 2263
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	8 cut(s)	762, 1377, 1407, 1626, 2178, 2259, 2352, 2507
Zsp2I	ATGCAT	3 cut(s)	855, 1841, 2286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.