Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Reverse (-)

32228964 .. 32235995

Gene Structure 7032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g33060.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCTTCTTCCATCAAATATCACCGTTTTTACTCTTGATTTTTCGGGTTCAGGATTATCTGATGGTGATTATGTCAGCCTTGGTTGGCATGAGAGAGATGACCTTAAGATTGTGGTTTCATATTTAAGAAGCAAAAAGCAAAACTTGCGTATAGGTCTTTGGGGGCGATCGATGGGTGCAGTCACATGCCTACTTTATGGAGCAGAAGACCCTTCCATAGCCGGAATGGTGTTGGATAGTGCCTTTTCAAGCTTGTATGTTCTAATGATGGAACTAGTTGATGTATACAAGATTCGGCTTCCTAAATTTACTGTTAAGATGGCAATACAATATATGCGTCGGATAATTGAGAAGAAGGCAAAGTTTGATAGGATGGATCTTAATTGCTTGCAGGTTGCACCCAAAACATTCATTCCTGCTTTATTTGGACATGCTAAGGATGACAAATTCATCCAAACCCATCATTCTGACATCATCTACAAGTCTTATGCGGGGGACAAAAATATTATACATTTCGATGGTGATCACAACTCTTCTCGGCCACAATTTTATTATGATTCAGTTTCCATTTTCTTCTATAATGTTCTTCATCCCCCGCAAACGTCTTGTCATTCATGTAAGCTTGAGAAGTATTATGATTTGGGGGATTTGAAGATTGGTGCTGGTTTGGATGAGGGTTTGTTATATGAGATAATTACTGGAGTTCATTCTGCGGGTACTGACGTGGCAAGTTCATCTTCTGTTCCTCCTGCCATTTCAACCACAAAATGTGTTGGCGAACTTCTTTCTGAAATTGCACCAGTGACTGCTGCTGTTGATTCTATGCATGATGAAGCTGACACACTTAACAGTCACGAACCATCATATTTAGAGGAGCAGCGCAATGATGAGAATGTAGAATGTTGTTCATATACAAGCTCAAACAGGGAGAGTTGGGGCAGATGCTCTTCATTAGGAGGCAGTGATGAAGAATCTTCTGCTGCTTGCACAGCTGCTGACAGCAGTCATCAGAAGAACCTTAAGGTGTTTGCGATGCCTCTTGGATGCATACAACAAAAATCATCAGAACTAAGAAAAGAGGAAAAGAAAAAGAAGAAAGTTCCCATTGCTCCAAAGAAGCCCAGGGGTGAGAAATTTGAGAAGTTAGAGGCCCTTGGCAAACGACTGCGTCTTTGCATCCCAAAGCGAGTAAAAAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

401

Amino Acids

44.63

Weight (kDa)

7.55

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	3 cut(s)	491, 596, 713
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	539
AcsI	RAATTY	3 cut(s)	305, 446, 1133
AfaI	GTAC	1 cut(s)	718
AflII	CTTAAG	2 cut(s)	104, 1019
AgsI	TTSAA	3 cut(s)	249, 652, 759
AhlI	ACTAGT	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	1 cut(s)	1121
AluBI	AGCT	5 cut(s)	252, 622, 836, 918, 992
AluI	AGCT	5 cut(s)	252, 622, 836, 918, 992
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	2 cut(s)	806, 995
AoxI	GGCC	2 cut(s)	539, 1149
ApeKI	GCWGC	4 cut(s)	809, 877, 980, 992
ApoI	RAATTY	3 cut(s)	305, 446, 1133
ArsI	GACNNNNNNTTYG	4 cut(s)	592, 624, 1155, 1187
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	1 cut(s)	1150
AsuHPI	GGTGA	4 cut(s)	13, 77, 533, 1139
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	796, 889, 967, 979
BccI	CCATC	9 cut(s)	19, 56, 166, 262, 313, 367, 468, 512, 868
BciT130I	CCWGG	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	523
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	1 cut(s)	275
BfrI	CTTAAG	2 cut(s)	104, 1019
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	4 cut(s)	810, 878, 981, 993
BlsI	GCNGC	4 cut(s)	811, 879, 982, 994
Bme1390I	CCNGG	1 cut(s)	1123
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	1150
BmrFI	CCNGG	1 cut(s)	1123
BmsI	GCATC	4 cut(s)	932, 1023, 1034, 1185
BoxI	GACNNNNGTC	1 cut(s)	1002
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	644
Bsa29I	ATCGAT	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	4 cut(s)	79, 1121, 1122, 1153
Bse1I	ACTGG	2 cut(s)	703, 800
Bse3DI	GCAATG	2 cut(s)	889, 1104
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	1123
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	4 cut(s)	79, 1121, 1122, 1153
BseGI	GGATG	7 cut(s)	378, 445, 450, 589, 676, 1049, 1176
BseJI	GATNNNNATC	1 cut(s)	522
BseMI	GCAATG	2 cut(s)	889, 1104
BseNI	ACTGG	2 cut(s)	703, 800
BseRI	GAGGAG	1 cut(s)	887
BseXI	GCAGC	4 cut(s)	796, 889, 967, 979
BsgI	GTGCAG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	541, 1151
BshVI	ATCGAT	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	541, 1151
Bsp143I	GATC	3 cut(s)	167, 376, 523
BspACI	CCGC	3 cut(s)	491, 596, 713
BspANI	GGCC	2 cut(s)	541, 1151
BspDI	ATCGAT	1 cut(s)	170
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	384
BspQI	GCTCTTC	1 cut(s)	952
BspTI	CTTAAG	2 cut(s)	104, 1019
BsrDI	GCAATG	2 cut(s)	889, 1104
BsrI	ACTGG	2 cut(s)	703, 800
BssECI	CCNNGG	4 cut(s)	79, 1121, 1122, 1153
BssMI	GATC	3 cut(s)	167, 376, 523
BssNAI	GTATAC	1 cut(s)	286
BssT1I	CCWWGG	2 cut(s)	79, 1153
Bst1107I	GTATAC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	1123
Bst4CI	ACNGT	3 cut(s)	25, 313, 851
Bst6I	CTCTTC	2 cut(s)	538, 952
BstAFI	CTTAAG	2 cut(s)	104, 1019
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	389, 985
BstDEI	CTNAG	2 cut(s)	435, 1070
BstF5I	GGATG	7 cut(s)	378, 445, 450, 589, 676, 1049, 1176
BstHHI	GCGC	1 cut(s)	882
BstKTI	GATC	3 cut(s)	170, 379, 526
BstMBI	GATC	3 cut(s)	167, 376, 523
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 989
BstNI	CCWGG	1 cut(s)	1123
BstNSI	RCATGY	2 cut(s)	189, 434
BstPAI	GACNNNNGTC	1 cut(s)	1002
BstSCI	CCNGG	1 cut(s)	1121
BstV1I	GCAGC	4 cut(s)	796, 889, 967, 979
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BstZ17I	GTATAC	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	541, 1151
BsuTUI	ATCGAT	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	1046
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	7 cut(s)	378, 445, 450, 589, 676, 1049, 1176
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	2 cut(s)	807, 967
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	389, 985
CaiI	CAGNNNCTG	2 cut(s)	806, 995
CfoI	GCGC	1 cut(s)	882
Cfr13I	GGNCC	1 cut(s)	1150
ClaI	ATCGAT	1 cut(s)	170
CseI	GACGC	2 cut(s)	326, 1157
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	5 cut(s)	89, 186, 431, 615, 827
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	2 cut(s)	435, 1070
DpnI	GATC	3 cut(s)	169, 378, 525
DpnII	GATC	3 cut(s)	167, 376, 523
EaeI	YGGCCR	1 cut(s)	539
Eam1104I	CTCTTC	2 cut(s)	538, 952
EarI	CTCTTC	2 cut(s)	538, 952
Eco130I	CCWWGG	2 cut(s)	79, 1153
EcoO109I	RGGNCCY	1 cut(s)	1150
EcoRII	CCWGG	1 cut(s)	1121
EcoT14I	CCWWGG	2 cut(s)	79, 1153
EcoT22I	ATGCAT	2 cut(s)	828, 1049
ErhI	CCWWGG	2 cut(s)	79, 1153
FaeI	CATG	5 cut(s)	92, 189, 434, 618, 830
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 721, 753
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	5 cut(s)	88, 185, 430, 614, 826
FauI	CCCGC	3 cut(s)	484, 603, 706
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	810, 878, 981, 993
FokI	GGATG	7 cut(s)	385, 437, 452, 576, 683, 1056, 1163
Fsp4HI	GCNGC	4 cut(s)	810, 878, 981, 993
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	4 cut(s)	810, 878, 981, 993
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	541, 1151
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	2 cut(s)	326, 1157
HhaI	GCGC	1 cut(s)	882
Hin1II	CATG	5 cut(s)	92, 189, 434, 618, 830
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HindIII	AAGCTT	2 cut(s)	250, 620
HinfI	GANTC	4 cut(s)	292, 557, 818, 971
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	4 cut(s)	13, 77, 533, 1139
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	6 cut(s)	61, 342, 469, 790, 1011, 1066
Hpy188III	TCNNGA	3 cut(s)	35, 51, 854
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	222, 349
HpyCH4III	ACNGT	3 cut(s)	25, 313, 851
HpyCH4IV	ACGT	2 cut(s)	602, 723
HpyCH4V	TGCA	8 cut(s)	179, 391, 398, 797, 826, 987, 1047, 1176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 989
HpyF3I	CTNAG	2 cut(s)	435, 1070
HpySE526I	ACGT	2 cut(s)	602, 723
Hsp92II	CATG	5 cut(s)	92, 189, 434, 618, 830
HspAI	GCGC	1 cut(s)	880
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	167, 376, 523
LguI	GCTCTTC	1 cut(s)	952
LmnI	GCTCC	3 cut(s)	200, 874, 1114
Lsp1109I	GCAGC	4 cut(s)	796, 889, 967, 979
LweI	GCATC	4 cut(s)	932, 1023, 1034, 1185
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	2 cut(s)	602, 723
MaeIII	GTNAC	3 cut(s)	181, 802, 851
MalI	GATC	3 cut(s)	169, 378, 525
MboI	GATC	3 cut(s)	167, 376, 523
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	9 cut(s)	305, 345, 382, 446, 545, 693, 792, 1133, 1196
MmeI	TCCRAC	2 cut(s)	213, 320
MnlI	CCTC	7 cut(s)	667, 756, 865, 950, 1047, 1072, 1141
Mph1103I	ATGCAT	2 cut(s)	828, 1049
MseI	TTAA	6 cut(s)	105, 125, 315, 381, 846, 1020
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	992
MspCI	CTTAAG	2 cut(s)	104, 1019
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	1123
MvaI	CCWGG	1 cut(s)	1123
MwoI	GCNNNNNNNGC	2 cut(s)	145, 989
NdeII	GATC	3 cut(s)	167, 376, 523
NlaIII	CATG	5 cut(s)	92, 189, 434, 618, 830
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	3 cut(s)	181, 802, 851
NsiI	ATGCAT	2 cut(s)	828, 1049
NspI	RCATGY	2 cut(s)	189, 434
PasI	CCCWGGG	1 cut(s)	1122
PciSI	GCTCTTC	1 cut(s)	952
PfeI	GAWTC	4 cut(s)	292, 557, 818, 971
PflFI	GACNNNGTC	1 cut(s)	1167
PkrI	GCNGC	4 cut(s)	811, 879, 982, 994
Ple19I	CGATCG	1 cut(s)	170
PshAI	GACNNNNGTC	1 cut(s)	1002
Psp6I	CCWGG	1 cut(s)	1121
PspGI	CCWGG	1 cut(s)	1121
PspPI	GGNCC	1 cut(s)	1150
PstNI	CAGNNNCTG	2 cut(s)	806, 995
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	1167
PvuI	CGATCG	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	952
SaqAI	TTAA	6 cut(s)	105, 125, 315, 381, 846, 1020
SatI	GCNGC	4 cut(s)	810, 878, 981, 993
Sau3AI	GATC	3 cut(s)	167, 376, 523
Sau96I	GGNCC	1 cut(s)	1150
ScrFI	CCNGG	1 cut(s)	1123
SfaNI	GCATC	4 cut(s)	932, 1023, 1034, 1185
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	3 cut(s)	104, 623, 1019
SmoI	CTYRAG	3 cut(s)	104, 623, 1019
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	9 cut(s)	305, 345, 382, 446, 545, 693, 792, 1133, 1196
SsiI	CCGC	3 cut(s)	491, 596, 713
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	1121
StyI	CCWWGG	2 cut(s)	79, 1153
TaaI	ACNGT	3 cut(s)	25, 313, 851
TaiI	ACGT	2 cut(s)	605, 726
TaqI	TCGA	2 cut(s)	170, 516
TasI	AATT	9 cut(s)	305, 345, 382, 446, 545, 693, 792, 1133, 1196
TfiI	GAWTC	4 cut(s)	292, 557, 818, 971
Tru1I	TTAA	6 cut(s)	105, 125, 315, 381, 846, 1020
Tru9I	TTAA	6 cut(s)	105, 125, 315, 381, 846, 1020
TscAI	CASTG	2 cut(s)	807, 967
TseFI	GTSAC	3 cut(s)	181, 802, 851
TseI	GCWGC	4 cut(s)	809, 877, 980, 992
Tsp45I	GTSAC	3 cut(s)	181, 802, 851
TspRI	CASTG	2 cut(s)	807, 967
Tth111I	GACNNNGTC	1 cut(s)	1167
Vha464I	CTTAAG	2 cut(s)	104, 1019
XapI	RAATTY	3 cut(s)	305, 446, 1133
XceI	RCATGY	2 cut(s)	189, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	2 cut(s)	828, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.