Rroxscaffold_1G00076010

Serine aminopeptidase, S33

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
96518082 .. 96526373
8292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00076010.1

Sequence Viewer

Length: 1422 bp
ATGATTGATCAATTCATAAATTTTGTGATTCGCCCTCCCAGGGCAGACTATAACCCAGATCAGTACCTATGGGAAAGGGATTTCACTCTTGCAGGCAGAGCATACATACGACAAGACTTGGAGCTTAGGAATGCCAGAGGCCATACCTTGCAGTGTAGTCATTATCTTCCTTCACCGTTCCCAGAGGATTCTTCTCTACCTTGTGTTGTATACTGCCATGGAAACAGTGGATGTAGGGCAGATGCAAATGAAGCCGCTGTAATTCTTCTTCCATCAAATATCACTGTTTTCACTCTTGATTTTTCGGGTTCAGGCTTATCTGATGGTGACTATGTCAGCCTTGGTTGGCATGAGAGAGATGACCTCAAGATCGTGGTTTCATATCTAAGAAGCAACAAACAAATCTCGCGTATAGGTCTATGGGGGCGATCTATGGGAGCAGTCACTTGCCTTCTTTATGGAGCAGAAGACCCTTCCATTGCTGGAATGGTGTTGGATAGTGCCTTTTCAAACTTGTATGTTCTAATGATGGAGCTAGTGGATGTGTACAAGATCCGGCTTCCTAAATTCACTGTTAAGATGGCAGTACAATACATGCGCCGGATAATTGAGAAGAAGGCAAAGTTTGATATCATGGATCTTAATTGCTTACAGGTTGCATCCAAAACATTCATTCCTGCTTTATTTGGACATGCCAAGGACGACAAGTTCATCCAAACCAGCCATTCTGATCTCATCTACAAGTCCTATGCACCTGAGAAATATTATGATCTAGAGGATTTGAAGGTTGGCGCTGGTTTGGATGAGGGCCTGTTACATAAGATAATCAGTGGTGTTCATTCTGCTGGTACTGATGCTGCAAGTTCTTCTTATGCTTCTGCAGCCATTGCAACCGAAAAATCCGTGGGAGACCTTCTCTCTGAAATCGCACCAATGGCTACTATAGTTGTATGCGTCTTTATCCTAGGTTTATTTATCCTCCATGTACTCATTTTGTTGAACCATCGTGCAACTTGCTTTTTATTGGTAACGCAGTATTCTGCACATGATGAAGATGGCACACTTAATTGTCACGATACATCAAATCTACAGGATCGGCCAAATGGTCAGAATGAAGAATGCTGTTCATATACAAGCTCAAATAGAGAGAGTTGGGGAAGATGCTCTTCACTAGAAGGCAGTGATGAAGAATCTTCTGATTGCACAGCTGTTGACAATAGTCATCAGAAGGTGTATGCAGCATCCCTTCAATGTGAGCAACAAAAATCACCGGACCCGAAGAAAGAGGTGAAGAAAAAGAAGAAAGTTTCAATTGCTCCAAAGAAGCCCAAAAGTGAGAAATTTGAAAAGTTGGAGGCCTTTGGCAAAAGATTGCGTCTTTGCATCCTGAAGGGAGTAAACCATAGGAGGCACCACACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

52.86

Weight (kDa)

6.6

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 67 - 172 4.6e-07 alpha/beta hydrolase fold
Hydrolase_4 PF12146 68 - 175 1.2e-09 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1410
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 409
AciI CCGC 1 cut(s) 255
AclWI GGATC 3 cut(s) 547, 645, 1101
AcoI YGGCCR 1 cut(s) 1097
AcsI RAATTY 3 cut(s) 19, 566, 1340
AcuI CTGAAG 1 cut(s) 1409
AcvI CACGTG 1 cut(s) 1419
AfaI GTAC 5 cut(s) 65, 548, 588, 850, 987
AfiI CCNNNNNNNGG 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 1416
AgsI TTSAA 6 cut(s) 510, 784, 1000, 1250, 1311, 1346
AjnI CCWGG 1 cut(s) 38
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
AluBI AGCT 4 cut(s) 124, 535, 1137, 1208
AluI AGCT 4 cut(s) 124, 535, 1137, 1208
Alw26I GTCTC 1 cut(s) 903
AlwI GGATC 3 cut(s) 547, 645, 1101
AoxI GGCC 4 cut(s) 139, 808, 1097, 1356
ApeKI GCWGC 3 cut(s) 857, 881, 1238
ApoI RAATTY 3 cut(s) 19, 566, 1340
AspA2I CCTAGG 1 cut(s) 964
AspLEI GCGC 2 cut(s) 600, 794
AspS9I GGNCC 2 cut(s) 808, 1273
AsuHPI GGTGA 4 cut(s) 165, 338, 1260, 1300
AvaII GGWCC 1 cut(s) 1273
AvrII CCTAGG 1 cut(s) 964
BanI GGYRCC 1 cut(s) 1410
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbrPI CACGTG 1 cut(s) 1419
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 844, 893, 1250
BccI CCATC 6 cut(s) 280, 317, 523, 574, 1011, 1049
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 903
BfaI CTAG 4 cut(s) 536, 773, 965, 1172
BfmI CTRYAG 3 cut(s) 879, 942, 1088
BfoI RGCGCY 1 cut(s) 795
BisI GCNGC 4 cut(s) 255, 858, 882, 1239
BlnI CCTAGG 1 cut(s) 964
BlsI GCNGC 4 cut(s) 256, 859, 883, 1240
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 1273
BmgT120I GGNCC 2 cut(s) 808, 1273
BmiI GGNNCC 2 cut(s) 1275, 1412
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 6 cut(s) 232, 668, 844, 1151, 1250, 1392
BoxI GACNNNNGTC 1 cut(s) 1218
BpiI GAAGAC 1 cut(s) 474
BplI GAGNNNNNCTC 4 cut(s) 348, 380, 900, 932
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 1419
BsaI GGTCTC 1 cut(s) 903
BsaJI CCNNGG 7 cut(s) 38, 39, 217, 340, 696, 903, 964
BsaWI WCCGGW 1 cut(s) 1270
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 2 cut(s) 477, 885
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 7 cut(s) 38, 39, 217, 340, 696, 903, 964
BseGI GGATG 7 cut(s) 236, 547, 659, 711, 808, 1241, 1383
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 477, 885
BseMII CTCAG 1 cut(s) 747
BseXI GCAGC 3 cut(s) 844, 893, 1250
BsgI GTGCAG 1 cut(s) 1026
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 4 cut(s) 141, 810, 1099, 1358
BshNI GGYRCC 1 cut(s) 1410
BsiSI CCGG 3 cut(s) 556, 601, 1271
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 903
BsmI GAATGC 2 cut(s) 136, 1124
BsnI GGCC 4 cut(s) 141, 810, 1099, 1358
Bso31I GGTCTC 1 cut(s) 903
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 1 cut(s) 255
BspANI GGCC 4 cut(s) 141, 810, 1099, 1358
BspCNI CTCAG 1 cut(s) 748
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 1275, 1412
BspMAI CTGCAG 1 cut(s) 883
BspPI GGATC 3 cut(s) 547, 645, 1101
BspQI GCTCTTC 1 cut(s) 1171
BspT107I GGYRCC 1 cut(s) 1410
BspTNI GGTCTC 1 cut(s) 903
BsrDI GCAATG 2 cut(s) 477, 885
BsrGI TGTACA 1 cut(s) 546
BssECI CCNNGG 7 cut(s) 38, 39, 217, 340, 696, 903, 964
BssMI GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
BssNAI GTATAC 1 cut(s) 211
BssT1I CCWWGG 4 cut(s) 217, 340, 696, 964
Bst1107I GTATAC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 4 cut(s) 177, 227, 286, 574
Bst6I CTCTTC 1 cut(s) 1171
BstAPI GCANNNNNTGC 1 cut(s) 887
BstAUI TGTACA 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 1419
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 125, 386, 756
BstDSI CCRYGG 2 cut(s) 217, 903
BstF5I GGATG 7 cut(s) 236, 547, 659, 711, 808, 1241, 1383
BstFNI CGCG 1 cut(s) 409
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 2 cut(s) 600, 794
BstKTI GATC 9 cut(s) 10, 61, 372, 431, 555, 640, 733, 772, 1096
BstMAI GTCTC 1 cut(s) 903
BstMBI GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 98, 251, 881, 887, 935
BstNI CCWGG 1 cut(s) 40
BstNSI RCATGY 2 cut(s) 598, 695
BstPAI GACNNNNGTC 1 cut(s) 1218
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 3 cut(s) 879, 942, 1088
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 844, 893, 1250
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 552, 637
BstYI RGATCY 2 cut(s) 552, 637
BstZ17I GTATAC 1 cut(s) 211
BsuRI GGCC 4 cut(s) 141, 810, 1099, 1358
BtgI CCRYGG 2 cut(s) 217, 903
BtsCI GGATG 7 cut(s) 236, 547, 659, 711, 808, 1241, 1383
BtsI GCAGTG 2 cut(s) 158, 1186
BtsIMutI CAGTG 6 cut(s) 158, 232, 282, 570, 835, 1186
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 2 cut(s) 600, 794
Cfr13I GGNCC 2 cut(s) 808, 1273
CseI GACGC 2 cut(s) 943, 1364
Csp6I GTAC 5 cut(s) 64, 547, 587, 849, 986
CviAII CATG 7 cut(s) 218, 350, 595, 634, 692, 983, 1046
CviQI GTAC 5 cut(s) 64, 547, 587, 849, 986
DdeI CTNAG 3 cut(s) 125, 386, 756
DpnI GATC 9 cut(s) 9, 60, 371, 430, 554, 639, 732, 771, 1095
DpnII GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
EaeI YGGCCR 1 cut(s) 1097
Eam1104I CTCTTC 1 cut(s) 1171
EarI CTCTTC 1 cut(s) 1171
Eco130I CCWWGG 4 cut(s) 217, 340, 696, 964
Eco147I AGGCCT 1 cut(s) 1358
Eco31I GGTCTC 1 cut(s) 903
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 1273
Eco57I CTGAAG 1 cut(s) 1409
Eco72I CACGTG 1 cut(s) 1419
EcoO109I RGGNCCY 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 4 cut(s) 217, 340, 696, 964
ErhI CCWWGG 4 cut(s) 217, 340, 696, 964
FaeI CATG 7 cut(s) 221, 353, 598, 637, 695, 986, 1049
FalI AAGNNNNNCTT 4 cut(s) 853, 885, 1150, 1182
FatI CATG 7 cut(s) 217, 349, 594, 633, 691, 982, 1045
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 4 cut(s) 255, 858, 882, 1239
FokI GGATG 7 cut(s) 243, 554, 646, 698, 815, 1228, 1370
Fsp4HI GCNGC 4 cut(s) 255, 858, 882, 1239
FspBI CTAG 4 cut(s) 536, 773, 965, 1172
GlaI GCGC 2 cut(s) 599, 793
GluI GCNGC 4 cut(s) 255, 858, 882, 1239
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 4 cut(s) 141, 810, 1099, 1358
HapII CCGG 3 cut(s) 556, 601, 1271
HgaI GACGC 2 cut(s) 943, 1364
HhaI GCGC 2 cut(s) 600, 794
Hin1II CATG 7 cut(s) 221, 353, 598, 637, 695, 986, 1049
Hin6I GCGC 2 cut(s) 598, 792
HinP1I GCGC 2 cut(s) 598, 792
HincII GTYRAC 1 cut(s) 1213
HindII GTYRAC 1 cut(s) 1213
HinfI GANTC 3 cut(s) 28, 188, 1190
HpaII CCGG 3 cut(s) 556, 601, 1271
HphI GGTGA 4 cut(s) 165, 338, 1260, 1300
Hpy166II GTNNAC 4 cut(s) 211, 547, 1213, 1399
Hpy188I TCNGA 6 cut(s) 322, 730, 922, 1110, 1198, 1227
Hpy188III TCNNGA 5 cut(s) 296, 367, 773, 1073, 1387
Hpy8I GTNNAC 4 cut(s) 211, 547, 1213, 1399
HpyCH4III ACNGT 4 cut(s) 177, 227, 286, 574
HpyCH4IV ACGT 1 cut(s) 1418
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 251, 881, 887, 935
HpyF3I CTNAG 3 cut(s) 125, 386, 756
HpySE526I ACGT 1 cut(s) 1418
Hsp92II CATG 7 cut(s) 221, 353, 598, 637, 695, 986, 1049
HspAI GCGC 2 cut(s) 598, 792
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
LguI GCTCTTC 1 cut(s) 1171
LmnI GCTCC 5 cut(s) 121, 437, 461, 532, 1321
Lsp1109I GCAGC 3 cut(s) 844, 893, 1250
LweI GCATC 6 cut(s) 232, 668, 844, 1151, 1250, 1392
MaeI CTAG 4 cut(s) 536, 773, 965, 1172
MaeII ACGT 1 cut(s) 1418
MaeIII GTNAC 5 cut(s) 326, 442, 813, 1027, 1070
MalI GATC 9 cut(s) 9, 60, 371, 430, 554, 639, 732, 771, 1095
MboI GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
MfeI CAATTG 1 cut(s) 1311
MflI RGATCY 2 cut(s) 552, 637
MluCI AATT 9 cut(s) 11, 19, 261, 566, 606, 643, 1066, 1311, 1340
MmeI TCCRAC 2 cut(s) 474, 1332
MseI TTAA 3 cut(s) 576, 642, 1065
MspA1I CMGCKG 2 cut(s) 257, 1208
MspI CCGG 3 cut(s) 556, 601, 1271
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 1311
Mva1269I GAATGC 2 cut(s) 136, 1124
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 5 cut(s) 98, 251, 881, 887, 935
NcoI CCATGG 1 cut(s) 217
NdeII GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
NlaIII CATG 7 cut(s) 221, 353, 598, 637, 695, 986, 1049
NlaIV GGNNCC 2 cut(s) 1275, 1412
NmuCI GTSAC 3 cut(s) 326, 442, 1070
NspI RCATGY 2 cut(s) 598, 695
PasI CCCWGGG 1 cut(s) 39
PceI AGGCCT 1 cut(s) 1358
PciSI GCTCTTC 1 cut(s) 1171
PctI GAATGC 2 cut(s) 136, 1124
PfeI GAWTC 3 cut(s) 28, 188, 1190
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 4 cut(s) 256, 859, 883, 1240
PmaCI CACGTG 1 cut(s) 1419
PmlI CACGTG 1 cut(s) 1419
Ppu21I YACGTR 1 cut(s) 1419
PshAI GACNNNNGTC 1 cut(s) 1218
Psp6I CCWGG 1 cut(s) 38
PspCI CACGTG 1 cut(s) 1419
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 1275, 1412
PspPI GGNCC 2 cut(s) 808, 1273
PstI CTGCAG 1 cut(s) 883
PsuI RGATCY 2 cut(s) 552, 637
PsyI GACNNNGTC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 5 cut(s) 65, 548, 588, 850, 987
RsaNI GTAC 5 cut(s) 64, 547, 587, 849, 986
SapI GCTCTTC 1 cut(s) 1171
SaqAI TTAA 3 cut(s) 576, 642, 1065
SatI GCNGC 4 cut(s) 255, 858, 882, 1239
Sau3AI GATC 9 cut(s) 7, 58, 369, 428, 552, 637, 730, 769, 1093
Sau96I GGNCC 2 cut(s) 808, 1273
ScrFI CCNGG 1 cut(s) 40
SfaNI GCATC 6 cut(s) 232, 668, 844, 1151, 1250, 1392
SfcI CTRYAG 3 cut(s) 879, 942, 1088
SinI GGWCC 1 cut(s) 1273
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 9 cut(s) 11, 19, 261, 566, 606, 643, 1066, 1311, 1340
SseBI AGGCCT 1 cut(s) 1358
SsiI CCGC 1 cut(s) 255
SspI AATATT 1 cut(s) 764
SspMI CTAG 4 cut(s) 536, 773, 965, 1172
StuI AGGCCT 1 cut(s) 1358
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 4 cut(s) 217, 340, 696, 964
TaaI ACNGT 4 cut(s) 177, 227, 286, 574
TaiI ACGT 1 cut(s) 1421
TasI AATT 9 cut(s) 11, 19, 261, 566, 606, 643, 1066, 1311, 1340
TatI WGTACW 3 cut(s) 546, 586, 985
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 3 cut(s) 28, 188, 1190
Tru1I TTAA 3 cut(s) 576, 642, 1065
Tru9I TTAA 3 cut(s) 576, 642, 1065
TscAI CASTG 6 cut(s) 158, 232, 289, 577, 835, 1186
TseFI GTSAC 3 cut(s) 326, 442, 1070
TseI GCWGC 3 cut(s) 857, 881, 1238
Tsp45I GTSAC 3 cut(s) 326, 442, 1070
TspGWI ACGGA 1 cut(s) 892
TspRI CASTG 6 cut(s) 158, 232, 289, 577, 835, 1186
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 1273
XapI RAATTY 3 cut(s) 19, 566, 1340
XbaI TCTAGA 1 cut(s) 772
XceI RCATGY 2 cut(s) 598, 695
XcmI CCANNNNNNNNNTGG 2 cut(s) 224, 484
XmaJI CCTAGG 1 cut(s) 964
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 4 cut(s) 536, 773, 965, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.